Wall clock time and date at job start Mon Mar 30 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 111.00280 * 2 1 4 4 C 1.50706 * 109.46903 * 66.04634 * 3 2 1 5 5 H 1.08003 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00171 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00087 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00231 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47149 * 60.00090 * 8 6 4 10 10 H 1.48495 * 109.47471 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47366 * 300.00330 * 8 6 4 12 12 C 1.39668 * 110.99856 * 236.04690 * 2 1 3 13 13 C 1.38996 * 120.03836 * 63.97625 * 12 2 1 14 14 C 1.38131 * 120.07820 * 179.97438 * 13 12 2 15 15 C 1.38184 * 120.14474 * 359.67933 * 14 13 12 16 16 C 1.38949 * 120.06921 * 0.59390 * 15 14 13 17 17 N 1.39671 * 120.03514 * 179.69659 * 16 15 14 18 18 N 1.36607 * 119.99660 * 359.73189 * 17 16 15 19 19 C 1.38753 * 120.04214 * 243.95396 * 12 2 1 20 20 N 1.48029 * 120.06896 * 0.02562 * 19 12 2 21 21 O 1.21797 * 120.00119 * 270.02451 * 20 19 12 22 22 O 1.21799 * 119.99683 * 90.02228 * 20 19 12 23 23 H 1.08994 * 109.46981 * 183.95027 * 1 2 3 24 24 H 1.08996 * 109.46814 * 303.94908 * 1 2 3 25 25 H 1.09002 * 109.46592 * 63.95388 * 1 2 3 26 26 H 1.09001 * 109.47546 * 186.04623 * 3 2 1 27 27 H 1.09002 * 109.47149 * 306.04755 * 3 2 1 28 28 H 0.96996 * 120.00421 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.96062 * 359.97438 * 13 12 2 30 30 H 1.07999 * 119.92803 * 180.02562 * 14 13 12 31 31 H 1.08000 * 119.96037 * 180.29873 * 15 14 13 32 32 H 0.96995 * 120.00378 * 179.73197 * 17 16 15 33 33 H 1.00901 * 110.99866 * 56.04859 * 18 17 16 34 34 H 1.00896 * 110.99345 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0747 1.5111 2.0489 6 6 2.0278 3.3490 1.5291 7 7 2.7130 4.0015 0.6156 8 14 1.5841 4.1863 3.1388 9 1 2.1758 3.4284 4.2705 10 1 2.1161 5.5726 3.1389 11 1 0.1069 4.2235 3.2867 12 6 1.9696 -0.7283 -1.0816 13 6 1.7260 -0.2998 -2.3813 14 6 2.2211 -1.0191 -3.4515 15 6 2.9653 -2.1629 -3.2342 16 6 3.2077 -2.5999 -1.9376 17 7 3.9547 -3.7596 -1.7189 18 7 4.4429 -4.4679 -2.7801 19 6 2.7109 -1.8801 -0.8601 20 7 2.9722 -2.3394 0.5227 21 8 3.9641 -1.9541 1.1152 22 8 2.1951 -3.1026 1.0679 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5739 0.8525 25 1 -0.3632 0.4513 -0.9233 26 1 3.0798 1.3444 -0.1082 27 1 1.5612 1.9273 -0.8309 28 1 2.9882 4.9173 0.7779 29 1 1.1490 0.5966 -2.5545 30 1 2.0307 -0.6838 -4.4604 31 1 3.3550 -2.7204 -4.0731 32 1 4.1269 -4.0621 -0.8136 33 1 5.0109 -3.8830 -3.3746 34 1 4.9598 -5.2762 -2.4682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087884148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:05 Heat of formation + Delta-G solvation = 66.043483 kcal Electronic energy + Delta-G solvation = -20494.080403 eV Core-core repulsion = 17238.585808 eV Total energy + Delta-G solvation = -3255.494595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.71169 -39.73133 -37.80506 -35.90401 -35.59147 -32.67304 -31.93513 -30.00986 -27.59116 -27.34314 -26.07493 -24.87704 -22.63532 -22.08505 -20.41493 -19.16135 -18.22679 -18.16341 -17.34019 -16.59321 -16.43139 -15.62181 -14.93721 -14.85565 -14.80228 -14.39194 -13.91260 -13.30082 -13.07501 -12.37718 -12.12955 -11.88787 -11.74363 -11.32204 -11.09978 -11.02998 -10.80844 -10.65463 -10.57643 -10.56075 -10.10207 -9.61618 -9.42181 -8.92632 -8.53179 -7.79161 -7.54729 -6.10853 -4.13387 1.00231 1.09901 1.33178 1.94385 2.54652 3.32116 3.35807 3.39975 3.53769 4.23708 4.44582 4.49746 4.93853 5.00205 5.24641 5.29500 5.31912 5.45482 5.77419 5.95311 5.99794 6.10687 6.27149 6.41066 6.51655 6.57741 6.80051 7.02868 7.07894 7.16636 7.64873 7.67023 7.77349 7.97658 8.15629 8.33858 8.91597 9.51081 10.99984 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.005773 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.507468 B = 4848.833039 C = 5282.255163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.526 5.526 3 C 0.202 3.798 4 C -0.513 4.513 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.903 3.097 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.208 3.792 13 C -0.194 4.194 14 C -0.033 4.033 15 C -0.193 4.193 16 C 0.268 3.732 17 N -0.597 5.597 18 N -0.596 5.596 19 C -0.090 4.090 20 N 0.042 4.958 21 O -0.143 6.143 22 O -0.155 6.155 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.003 0.997 28 H 0.264 0.736 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.403 0.597 33 H 0.337 0.663 34 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -13.187 -9.874 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.249 5.249 3 C 0.079 3.921 4 C -0.552 4.552 5 H 0.084 0.916 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.112 3.888 13 C -0.217 4.217 14 C -0.052 4.052 15 C -0.216 4.216 16 C 0.161 3.839 17 N -0.319 5.319 18 N -0.222 5.222 19 C -0.178 4.178 20 N 0.572 4.428 21 O -0.367 6.367 22 O -0.376 6.376 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.241 0.759 33 H 0.152 0.848 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.799 -13.188 -10.517 16.887 hybrid contribution 0.849 0.874 1.159 1.682 sum 1.648 -12.314 -9.358 15.554 Atomic orbital electron populations 1.22299 0.85440 1.00771 1.01842 1.60008 1.08944 1.19519 1.36448 1.19877 0.95657 0.78805 0.97720 1.21020 1.35708 0.97023 1.01417 0.91646 1.24957 0.94941 0.97155 0.97195 1.69939 1.37788 1.11644 1.34164 0.86479 0.78729 0.78250 0.83543 1.19929 1.21243 1.20158 1.18484 0.89931 0.88989 0.91434 1.21613 1.05849 1.02756 0.91484 1.21069 0.92502 0.92326 0.99312 1.20450 1.07147 1.00464 0.93535 1.16896 0.90185 0.84628 0.92187 1.43231 1.57085 1.26664 1.04923 1.60126 1.45034 1.07110 1.09888 1.20262 1.15497 1.02270 0.79779 1.43139 0.99200 0.97963 1.02491 1.94545 1.18378 1.58423 1.65337 1.94484 1.43405 1.30621 1.69137 0.92898 0.89339 0.95598 0.94844 0.97877 0.92663 0.84299 0.84693 0.84054 0.75910 0.84795 0.82540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 9.20 60.07 0.55 1.39 16 2 N -0.53 -11.82 4.44 -180.35 -0.80 -12.62 16 3 C 0.20 5.26 4.30 -4.97 -0.02 5.24 16 4 C -0.51 -14.47 8.46 -34.44 -0.29 -14.76 16 5 H 0.07 1.84 7.12 -52.48 -0.37 1.47 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 7 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.21 4.08 4.67 -83.82 -0.39 3.68 16 13 C -0.19 -3.18 8.65 -39.34 -0.34 -3.52 16 14 C -0.03 -0.42 10.03 -39.64 -0.40 -0.81 16 15 C -0.19 -2.43 9.36 -39.34 -0.37 -2.79 16 16 C 0.27 4.00 6.69 -83.82 -0.56 3.43 16 17 N -0.60 -7.32 6.64 32.39 0.22 -7.10 16 18 N -0.60 -5.04 9.60 60.35 0.58 -4.46 16 19 C -0.09 -1.68 6.19 -79.55 -0.49 -2.17 16 20 N 0.04 0.85 3.18 34.16 0.11 0.96 16 21 O -0.14 -3.08 19.26 -29.46 -0.57 -3.65 16 22 O -0.16 -3.15 19.25 -29.46 -0.57 -3.72 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.09 1.82 6.76 -51.93 -0.35 1.47 16 25 H 0.03 0.46 7.34 -51.93 -0.38 0.08 16 26 H 0.03 0.96 8.06 -51.93 -0.42 0.55 16 27 H 0.00 0.09 7.47 -51.93 -0.39 -0.30 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.14 2.24 7.13 -52.49 -0.37 1.87 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.14 1.39 7.02 -52.49 -0.37 1.02 16 32 H 0.40 5.05 8.08 -185.16 -1.50 3.56 16 33 H 0.34 2.36 8.42 -181.36 -1.53 0.83 16 34 H 0.36 2.06 9.21 -181.36 -1.67 0.39 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -32.56 300.64 -10.52 -43.08 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.33 Total: 0.61 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.41 Total: -8.72 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.84 Total: -48.87 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -1.13 Total: -7.36 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.56 -10.52 -43.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087884148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.128 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds