Wall clock time and date at job start Mon Mar 30 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 111.00280 * 2 1 4 4 C 1.50706 * 109.46903 * 66.04634 * 3 2 1 5 5 H 1.08003 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00171 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00087 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00231 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47149 * 60.00090 * 8 6 4 10 10 H 1.48495 * 109.47471 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47366 * 300.00330 * 8 6 4 12 12 C 1.39668 * 110.99856 * 236.04690 * 2 1 3 13 13 C 1.38996 * 120.03836 * 63.97625 * 12 2 1 14 14 C 1.38131 * 120.07820 * 179.97438 * 13 12 2 15 15 C 1.38184 * 120.14474 * 359.67933 * 14 13 12 16 16 C 1.38949 * 120.06921 * 0.59390 * 15 14 13 17 17 N 1.39671 * 120.03514 * 179.69659 * 16 15 14 18 18 N 1.36607 * 119.99660 * 359.73189 * 17 16 15 19 19 C 1.38753 * 120.04214 * 243.95396 * 12 2 1 20 20 N 1.48029 * 120.06896 * 0.02562 * 19 12 2 21 21 O 1.21797 * 120.00119 * 270.02451 * 20 19 12 22 22 O 1.21799 * 119.99683 * 90.02228 * 20 19 12 23 23 H 1.08994 * 109.46981 * 183.95027 * 1 2 3 24 24 H 1.08996 * 109.46814 * 303.94908 * 1 2 3 25 25 H 1.09002 * 109.46592 * 63.95388 * 1 2 3 26 26 H 1.09001 * 109.47546 * 186.04623 * 3 2 1 27 27 H 1.09002 * 109.47149 * 306.04755 * 3 2 1 28 28 H 0.96996 * 120.00421 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.96062 * 359.97438 * 13 12 2 30 30 H 1.07999 * 119.92803 * 180.02562 * 14 13 12 31 31 H 1.08000 * 119.96037 * 180.29873 * 15 14 13 32 32 H 0.96995 * 120.00378 * 179.73197 * 17 16 15 33 33 H 1.00901 * 110.99866 * 56.04859 * 18 17 16 34 34 H 1.00896 * 110.99345 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0747 1.5111 2.0489 6 6 2.0278 3.3490 1.5291 7 7 2.7130 4.0015 0.6156 8 14 1.5841 4.1863 3.1388 9 1 2.1758 3.4284 4.2705 10 1 2.1161 5.5726 3.1389 11 1 0.1069 4.2235 3.2867 12 6 1.9696 -0.7283 -1.0816 13 6 1.7260 -0.2998 -2.3813 14 6 2.2211 -1.0191 -3.4515 15 6 2.9653 -2.1629 -3.2342 16 6 3.2077 -2.5999 -1.9376 17 7 3.9547 -3.7596 -1.7189 18 7 4.4429 -4.4679 -2.7801 19 6 2.7109 -1.8801 -0.8601 20 7 2.9722 -2.3394 0.5227 21 8 3.9641 -1.9541 1.1152 22 8 2.1951 -3.1026 1.0679 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5739 0.8525 25 1 -0.3632 0.4513 -0.9233 26 1 3.0798 1.3444 -0.1082 27 1 1.5612 1.9273 -0.8309 28 1 2.9882 4.9173 0.7779 29 1 1.1490 0.5966 -2.5545 30 1 2.0307 -0.6838 -4.4604 31 1 3.3550 -2.7204 -4.0731 32 1 4.1269 -4.0621 -0.8136 33 1 5.0109 -3.8830 -3.3746 34 1 4.9598 -5.2762 -2.4682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087884148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:04 Heat of formation + Delta-G solvation = 43.219626 kcal Electronic energy + Delta-G solvation = -20495.070120 eV Core-core repulsion = 17238.585808 eV Total energy + Delta-G solvation = -3256.484312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.21201 -41.03512 -39.06531 -37.49610 -36.88123 -34.75425 -33.10923 -31.33041 -29.35472 -28.60008 -27.52129 -26.52403 -24.35481 -23.39786 -21.87361 -20.45961 -19.80244 -19.40368 -18.67598 -18.24745 -17.90449 -17.00671 -16.61280 -16.21809 -15.98459 -15.69641 -15.59214 -14.72089 -14.46929 -14.09174 -13.53265 -13.39919 -13.10493 -12.92358 -12.75107 -12.63559 -12.56516 -12.47254 -12.21401 -12.13834 -12.07510 -11.51586 -10.68979 -10.61661 -10.17449 -9.51950 -8.55125 -8.27767 -6.38908 -0.51215 -0.22926 0.13381 0.52706 1.38460 1.42322 1.49940 1.56489 2.33953 2.38281 2.85665 3.05658 3.61100 3.76838 3.87748 4.01327 4.17188 4.38092 4.47398 4.50274 4.75183 4.88025 4.89723 5.05186 5.13833 5.22943 5.25030 5.30407 5.51482 5.63078 5.92922 5.94976 6.26353 6.45800 6.53063 6.72186 6.81337 7.30433 8.83061 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.005773 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.507468 B = 4848.833039 C = 5282.255163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.542 5.542 3 C 0.225 3.775 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.928 5.928 8 Si 0.970 3.030 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.263 1.263 12 C 0.170 3.830 13 C -0.205 4.205 14 C -0.012 4.012 15 C -0.176 4.176 16 C 0.269 3.731 17 N -0.593 5.593 18 N -0.592 5.592 19 C -0.120 4.120 20 N 0.048 4.952 21 O -0.190 6.190 22 O -0.147 6.147 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.039 0.961 26 H -0.006 1.006 27 H -0.010 1.010 28 H 0.268 0.732 29 H 0.134 0.866 30 H 0.182 0.818 31 H 0.181 0.819 32 H 0.399 0.601 33 H 0.352 0.648 34 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -14.286 -11.790 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.265 5.265 3 C 0.101 3.899 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.188 1.188 12 C 0.074 3.926 13 C -0.228 4.228 14 C -0.031 4.031 15 C -0.199 4.199 16 C 0.160 3.840 17 N -0.312 5.312 18 N -0.221 5.221 19 C -0.208 4.208 20 N 0.575 4.425 21 O -0.405 6.405 22 O -0.375 6.375 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.012 0.988 27 H 0.008 0.992 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.199 0.801 31 H 0.198 0.802 32 H 0.237 0.763 33 H 0.168 0.832 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.655 -14.299 -12.432 18.959 hybrid contribution 0.928 1.031 1.589 2.110 sum 1.583 -13.268 -10.843 17.208 Atomic orbital electron populations 1.22266 0.84256 1.01608 1.01760 1.59732 1.10252 1.17377 1.39146 1.19370 0.93094 0.81038 0.96363 1.21321 1.35924 0.97692 1.02219 0.92267 1.25843 0.94591 0.97738 1.00731 1.70049 1.38554 1.12063 1.36085 0.85428 0.79082 0.77235 0.78861 1.19974 1.20264 1.18775 1.18605 0.92288 0.89901 0.91850 1.21653 1.06690 1.03269 0.91195 1.21530 0.90208 0.91114 1.00216 1.20948 1.05569 1.00054 0.93285 1.17133 0.89821 0.85033 0.92008 1.43324 1.56131 1.25835 1.05891 1.60101 1.46053 1.07395 1.08558 1.20445 1.17770 1.03624 0.78966 1.43451 0.98529 0.97249 1.03293 1.94534 1.19546 1.59859 1.66555 1.94434 1.42950 1.30319 1.69792 0.91214 0.91038 0.94203 0.98796 0.99237 0.92353 0.84773 0.80101 0.80178 0.76342 0.83245 0.80581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.89 9.20 127.69 1.17 3.06 16 2 N -0.54 -25.27 4.44 -724.50 -3.21 -28.49 16 3 C 0.23 12.33 4.30 85.56 0.37 12.70 16 4 C -0.53 -31.15 8.46 25.60 0.22 -30.93 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 6 C 0.01 0.58 5.46 84.65 0.46 1.04 16 7 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 8 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 C 0.17 6.73 4.67 38.20 0.18 6.91 16 13 C -0.21 -6.53 8.65 22.43 0.19 -6.33 16 14 C -0.01 -0.25 10.03 22.23 0.22 -0.03 16 15 C -0.18 -3.71 9.36 22.43 0.21 -3.50 16 16 C 0.27 7.51 6.69 38.19 0.26 7.76 16 17 N -0.59 -13.24 6.64 -51.42 -0.34 -13.59 16 18 N -0.59 -7.90 9.60 37.02 0.36 -7.55 16 19 C -0.12 -4.48 6.19 36.63 0.23 -4.25 16 20 N 0.05 1.99 3.18 -45.85 -0.15 1.84 16 21 O -0.19 -8.64 19.26 18.89 0.36 -8.28 16 22 O -0.15 -6.07 19.25 18.89 0.36 -5.71 16 23 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.07 3.05 6.76 -2.39 -0.02 3.03 16 25 H 0.04 1.45 7.34 -2.39 -0.02 1.43 16 26 H -0.01 -0.37 8.06 -2.39 -0.02 -0.39 16 27 H -0.01 -0.56 7.47 -2.39 -0.02 -0.58 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.13 4.31 7.13 -2.91 -0.02 4.29 16 30 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 31 H 0.18 2.44 7.02 -2.91 -0.02 2.42 16 32 H 0.40 9.57 8.08 -215.50 -1.74 7.83 16 33 H 0.35 3.44 8.42 -210.55 -1.77 1.67 16 34 H 0.38 3.09 9.21 -210.56 -1.94 1.15 16 Total: -1.00 -73.89 300.64 -1.08 -74.97 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.28 Total: 8.78 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 3.51 Total: -13.57 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.06 Total: -103.33 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.73 Total: -13.98 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.89 -1.08 -74.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087884148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.189 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds