Wall clock time and date at job start Mon Mar 30 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99903 * 2 1 4 4 H 1.48502 * 109.46566 * 269.99956 * 3 2 1 5 5 H 1.48500 * 109.47078 * 29.99361 * 3 2 1 6 6 H 1.48493 * 109.47162 * 149.99883 * 3 2 1 7 7 C 1.37879 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99724 * 173.70160 * 7 2 1 9 9 C 1.50705 * 119.99880 * 353.70665 * 7 2 1 10 10 C 1.52992 * 115.55290 * 86.10836 * 9 7 2 11 11 O 1.45206 * 109.47065 * 65.10221 * 10 9 7 12 12 C 1.34228 * 116.99869 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99957 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99978 * 180.02562 * 12 11 10 15 15 N 1.46503 * 109.47225 * 179.97438 * 14 12 11 16 16 C 1.34343 * 126.76069 * 124.99593 * 15 14 12 17 17 N 1.30891 * 108.21012 * 179.77178 * 16 15 14 18 18 C 1.33658 * 109.76735 * 0.23076 * 17 16 15 19 19 N 1.39606 * 125.60698 * 179.97438 * 18 17 16 20 20 N 1.31199 * 108.77981 * 359.97438 * 18 17 16 21 21 C 1.53006 * 117.49367 * 231.77643 * 9 7 2 22 22 C 1.53003 * 117.49731 * 300.43500 * 9 7 2 23 23 H 0.96999 * 120.00293 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46946 * 305.10462 * 10 9 7 25 25 H 1.08998 * 109.47476 * 185.10485 * 10 9 7 26 26 H 1.08999 * 109.47367 * 59.99466 * 14 12 11 27 27 H 1.09005 * 109.46890 * 299.99616 * 14 12 11 28 28 H 1.07998 * 125.89332 * 0.03794 * 16 15 14 29 29 H 0.97004 * 119.99683 * 359.97438 * 19 18 17 30 30 H 0.96991 * 120.00126 * 179.97438 * 19 18 17 31 31 H 1.08999 * 117.49454 * 214.99847 * 21 9 7 32 32 H 1.09002 * 117.50030 * 0.02711 * 21 9 7 33 33 H 1.09000 * 117.49824 * 359.97438 * 22 9 7 34 34 H 1.08997 * 117.49557 * 144.97847 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0796 -1.1969 -0.1021 9 6 1.2579 -2.4952 0.1442 10 6 0.7193 -3.0941 -1.1566 11 8 1.8301 -3.4658 -2.0146 12 6 1.5262 -4.0097 -3.2036 13 8 0.3703 -4.1693 -3.5172 14 6 2.6267 -4.4211 -4.1473 15 7 2.0399 -4.9834 -5.3662 16 6 2.2710 -4.5843 -6.6280 17 7 1.5637 -5.3376 -7.4314 18 6 0.8642 -6.2262 -6.7189 19 7 0.0002 -7.1892 -7.2433 20 7 1.1232 -6.0443 -5.4456 21 6 1.7342 -3.4673 1.2255 22 6 0.4253 -2.6956 1.4121 23 1 -0.4850 0.8400 -0.0004 24 1 0.0976 -2.3575 -1.6656 25 1 0.1233 -3.9782 -0.9302 26 1 3.2553 -5.1713 -3.6675 27 1 3.2307 -3.5504 -4.4027 28 1 2.9302 -3.7831 -6.9280 29 1 -0.1318 -7.2516 -8.2023 30 1 -0.4681 -7.7958 -6.6488 31 1 1.6637 -4.5335 1.0101 32 1 2.5873 -3.1655 1.8332 33 1 0.4181 -1.8866 2.1426 34 1 -0.5063 -3.2538 1.3194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:02 Heat of formation + Delta-G solvation = 24.125056 kcal Electronic energy + Delta-G solvation = -19638.524369 eV Core-core repulsion = 16381.212054 eV Total energy + Delta-G solvation = -3257.312315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.94127 -41.31087 -38.63721 -37.03095 -36.04627 -34.01920 -33.87833 -31.69910 -29.56369 -28.06165 -27.12087 -23.58550 -22.98116 -22.47421 -21.71354 -21.19810 -18.84569 -18.47685 -18.20905 -17.53481 -17.49747 -17.15017 -16.62298 -16.49771 -16.02259 -15.51846 -15.08234 -14.98124 -14.39203 -13.84146 -13.61422 -13.52396 -12.91570 -12.83393 -12.77497 -12.37189 -12.15734 -12.09677 -11.70411 -11.69423 -11.38809 -10.94539 -10.80188 -10.76670 -10.48831 -10.09827 -9.22513 -8.12994 -6.24867 0.69740 1.18337 1.20317 1.43864 1.46300 1.56199 1.82688 2.17927 2.43788 2.61446 3.16263 3.35984 3.59556 3.70547 3.93630 4.12196 4.19398 4.33189 4.38290 4.45767 4.64807 4.80598 4.95646 4.96374 5.17595 5.38854 5.43677 5.57168 5.66318 5.75677 5.85479 6.35618 6.43307 6.52723 6.77656 6.81627 7.44662 7.46536 8.95893 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.004336 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.295464 B = 6455.778773 C = 6960.167668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.006 3.994 10 C 0.133 3.867 11 O -0.339 6.339 12 C 0.433 3.567 13 O -0.537 6.537 14 C 0.153 3.847 15 N -0.383 5.383 16 C 0.296 3.704 17 N -0.598 5.598 18 C 0.453 3.547 19 N -0.817 5.817 20 N -0.394 5.394 21 C -0.175 4.175 22 C -0.151 4.151 23 H 0.260 0.740 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.156 0.844 27 H 0.194 0.806 28 H 0.275 0.725 29 H 0.422 0.578 30 H 0.418 0.582 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 -9.310 -10.910 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.006 3.994 10 C 0.059 3.941 11 O -0.254 6.254 12 C 0.275 3.725 13 O -0.427 6.427 14 C 0.030 3.970 15 N -0.175 5.175 16 C 0.000 4.000 17 N -0.333 5.333 18 C 0.081 3.919 19 N -0.376 5.376 20 N -0.232 5.232 21 C -0.212 4.212 22 C -0.188 4.188 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.174 0.826 27 H 0.211 0.789 28 H 0.290 0.710 29 H 0.254 0.746 30 H 0.249 0.751 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.549 -9.522 -10.640 15.708 hybrid contribution -0.631 0.925 0.111 1.125 sum 5.918 -8.597 -10.528 14.825 Atomic orbital electron populations 1.70125 1.07375 1.27317 1.50256 1.25764 0.95523 1.02329 0.94245 0.85608 0.78930 0.79178 0.78273 1.20124 1.21364 1.18711 1.20659 0.93170 0.89476 1.50674 0.91964 1.18887 1.00461 0.94909 0.85189 1.22468 0.85550 0.95856 0.90224 1.86489 1.40461 1.71135 1.27345 1.24570 0.91128 0.74302 0.82468 1.90702 1.23815 1.51900 1.76257 1.21480 0.90510 1.04098 0.80873 1.49672 1.34609 1.25873 1.07364 1.26956 0.96262 0.97790 0.79022 1.70237 1.16677 1.11589 1.34772 1.20911 0.92493 0.91446 0.87098 1.40943 1.49363 1.36394 1.10868 1.78259 1.16699 1.11232 1.17046 1.23026 0.97496 0.96351 1.04315 1.22477 0.93691 1.01417 1.01247 0.93108 0.94420 0.94024 0.82622 0.78940 0.70965 0.74606 0.75093 0.89208 0.89269 0.91137 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.56 12.88 21.45 0.28 -51.29 16 2 C 0.02 1.14 5.38 84.65 0.46 1.60 16 3 Si 0.95 41.73 29.54 68.60 2.03 43.76 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.50 -26.35 8.78 25.60 0.22 -26.12 16 8 H 0.06 3.20 7.82 -2.91 -0.02 3.18 16 9 C 0.01 0.29 1.62 -52.93 -0.09 0.20 16 10 C 0.13 6.25 5.29 71.98 0.38 6.63 16 11 O -0.34 -13.62 10.16 -51.39 -0.52 -14.14 16 12 C 0.43 15.24 7.99 71.23 0.57 15.81 16 13 O -0.54 -23.81 15.48 21.95 0.34 -23.47 16 14 C 0.15 3.17 7.14 85.63 0.61 3.78 16 15 N -0.38 -9.71 3.41 -355.82 -1.21 -10.92 16 16 C 0.30 5.98 12.61 180.37 2.28 8.26 16 17 N -0.60 -15.81 11.21 -201.31 -2.26 -18.07 16 18 C 0.45 13.09 9.44 260.91 2.46 15.55 16 19 N -0.82 -17.17 9.13 -59.00 -0.54 -17.71 16 20 N -0.39 -12.84 11.83 -59.03 -0.70 -13.54 16 21 C -0.17 -7.14 9.96 30.62 0.30 -6.83 16 22 C -0.15 -6.89 9.37 30.62 0.29 -6.61 16 23 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 24 H 0.04 2.02 8.13 -2.39 -0.02 2.00 16 25 H 0.04 1.89 8.09 -2.39 -0.02 1.87 16 26 H 0.16 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.19 1.98 8.09 -2.38 -0.02 1.96 16 28 H 0.28 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.42 6.74 8.96 -92.71 -0.83 5.91 16 30 H 0.42 7.59 8.96 -92.72 -0.83 6.76 16 31 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.07 3.43 8.14 -2.39 -0.02 3.42 16 34 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -78.14 309.66 4.39 -73.75 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.51 Total: 19.36 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 7.49 Total: 12.26 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.43 Total: -111.52 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.18 Total: -37.61 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -78.14 4.39 -73.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.880 kcal (2) G-P(sol) polarization free energy of solvation -78.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds