Wall clock time and date at job start Mon Mar 30 2020 04:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38251 * 119.55278 * 2 1 4 4 C 1.38538 * 119.22043 * 180.02562 * 3 2 1 5 5 C 1.39139 * 118.37423 * 359.97438 * 4 3 2 6 6 O 1.35912 * 120.47319 * 180.02562 * 5 4 3 7 7 C 1.42896 * 116.99963 * 359.95187 * 6 5 4 8 8 C 1.50705 * 109.46872 * 180.02562 * 7 6 5 9 9 O 1.21290 * 119.99862 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99712 * 179.97438 * 8 7 6 11 11 C 1.37104 * 119.99951 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99502 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00121 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99997 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99900 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47134 * 90.00051 * 15 13 11 17 17 H 1.48503 * 109.47045 * 209.99853 * 15 13 11 18 18 H 1.48493 * 109.47257 * 330.00007 * 15 13 11 19 19 C 1.38707 * 119.05145 * 359.97438 * 5 4 3 20 20 C 1.50703 * 119.65846 * 180.30195 * 19 5 4 21 21 O 1.42903 * 109.46610 * 269.72489 * 20 19 5 22 22 N 1.31839 * 119.55741 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46984 * 270.01964 * 1 2 3 24 24 H 1.09000 * 109.47349 * 30.01973 * 1 2 3 25 25 H 1.09005 * 109.47224 * 150.02633 * 1 2 3 26 26 H 1.07998 * 120.39390 * 0.02562 * 3 2 1 27 27 H 1.08005 * 120.81504 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47577 * 299.99880 * 7 6 5 29 29 H 1.08997 * 109.47099 * 60.00515 * 7 6 5 30 30 H 0.97003 * 120.00259 * 0.02562 * 10 8 7 31 31 H 0.97007 * 119.99806 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.47147 * 29.71962 * 20 19 5 33 33 H 1.08995 * 109.47516 * 149.72813 * 20 19 5 34 34 H 0.96700 * 113.99409 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.2026 0.0000 4 6 3.5742 1.1946 -0.0005 5 6 4.2284 -0.0334 -0.0005 6 8 5.5863 -0.0911 -0.0005 7 6 6.2884 1.1535 -0.0016 8 6 7.7727 0.8927 -0.0021 9 8 8.1883 -0.2468 -0.0020 10 7 8.6383 1.9258 -0.0036 11 6 9.9887 1.6887 -0.0035 12 1 10.3587 0.6741 -0.0018 13 6 10.8811 2.7536 -0.0045 14 7 12.1754 2.5263 -0.0039 15 14 10.2409 4.5086 -0.0054 16 1 10.0719 4.9745 1.3944 17 1 11.2102 5.3887 -0.7064 18 1 8.9320 4.5577 -0.7049 19 6 3.4748 -1.1980 0.0006 20 6 4.1691 -2.5355 0.0075 21 8 4.3877 -2.9656 -1.3376 22 7 2.1574 -1.1468 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8903 -0.5134 26 1 1.6480 2.1374 0.0004 27 1 4.1329 2.1190 -0.0010 28 1 6.0195 1.7217 -0.8921 29 1 6.0195 1.7231 0.8879 30 1 8.3059 2.8371 -0.0040 31 1 12.7984 3.2699 -0.0050 32 1 5.1268 -2.4451 0.5202 33 1 3.5470 -3.2652 0.5257 34 1 4.8322 -3.8214 -1.4095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091998828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:36 Heat of formation + Delta-G solvation = -82.465634 kcal Electronic energy + Delta-G solvation = -19500.021379 eV Core-core repulsion = 16205.794194 eV Total energy + Delta-G solvation = -3294.227185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85963 -38.91693 -37.58644 -36.62144 -34.12263 -32.81387 -32.14737 -31.82898 -29.08685 -27.72040 -25.92349 -24.56740 -22.42213 -21.73701 -19.64043 -18.62426 -18.17590 -17.41225 -17.06235 -16.05387 -15.69889 -15.61000 -15.02491 -14.52339 -14.42296 -14.15889 -13.88949 -13.52459 -13.44431 -12.96828 -12.75940 -12.40327 -12.34635 -12.23112 -12.01981 -11.38783 -11.35878 -11.04497 -10.69501 -10.08554 -9.98239 -9.85153 -9.71348 -9.65021 -8.69669 -8.32920 -8.27064 -6.42087 -3.95175 0.94454 1.17457 2.93377 2.95119 2.99341 3.09235 3.48892 3.53033 4.00009 4.03466 4.42551 4.46545 4.65024 4.74676 4.96087 5.03488 5.05676 5.15648 5.30589 5.40780 5.42509 5.43117 5.51410 5.61948 5.66438 5.80556 5.90640 6.06838 6.36880 7.18751 7.44930 7.71154 7.90709 7.97693 8.44749 8.80945 9.26484 9.62331 10.70314 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.004273 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.805429 B = 6551.582182 C = 7422.197259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.076 3.924 3 C -0.124 4.124 4 C -0.171 4.171 5 C 0.103 3.897 6 O -0.269 6.269 7 C 0.045 3.955 8 C 0.450 3.550 9 O -0.553 6.553 10 N -0.580 5.580 11 C -0.309 4.309 12 H 0.122 0.878 13 C 0.045 3.955 14 N -0.875 5.875 15 Si 0.880 3.120 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.269 1.269 19 C 0.101 3.899 20 C 0.136 3.864 21 O -0.564 6.564 22 N -0.433 5.433 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.372 0.628 31 H 0.276 0.724 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.668 -0.069 1.006 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.062 4.062 3 C -0.144 4.144 4 C -0.197 4.197 5 C 0.054 3.946 6 O -0.179 6.179 7 C -0.034 4.034 8 C 0.234 3.766 9 O -0.434 6.434 10 N -0.220 5.220 11 C -0.437 4.437 12 H 0.140 0.860 13 C -0.159 4.159 14 N -0.514 5.514 15 Si 0.706 3.294 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.195 1.195 19 C -0.039 4.039 20 C 0.058 3.942 21 O -0.369 6.369 22 N -0.144 5.144 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.155 0.845 27 H 0.161 0.839 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.205 0.795 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -20.753 -1.148 0.876 20.803 hybrid contribution 0.423 2.206 0.126 2.250 sum -20.330 1.058 1.002 20.383 Atomic orbital electron populations 1.20597 0.88626 1.03242 1.02760 1.21111 0.97045 0.88037 1.00025 1.21803 0.93756 0.99349 0.99473 1.21775 0.95638 0.97469 1.04827 1.20015 0.84303 0.94500 0.95791 1.86257 1.13450 1.31183 1.87028 1.22605 0.93261 0.85232 1.02326 1.19100 0.85623 0.86304 0.85536 1.90613 1.78402 1.21226 1.53188 1.42022 1.06968 1.06268 1.66742 1.19429 0.78127 0.97443 1.48679 0.86006 1.25037 0.95102 0.98449 0.97305 1.69615 1.00895 1.32518 1.48350 0.86672 0.79049 0.84684 0.79012 1.19428 1.19919 1.19472 1.20277 0.88289 0.93199 1.02122 1.20678 0.98343 0.90612 0.84572 1.86497 1.82549 1.41972 1.25883 1.67286 1.07671 1.29427 1.10054 0.90794 0.90946 0.90658 0.84479 0.83888 0.90175 0.90199 0.79502 0.91364 0.90804 0.92111 0.76983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.17 36.01 0.37 -0.42 16 2 C 0.08 0.92 6.78 -82.58 -0.56 0.36 16 3 C -0.12 -1.36 9.73 -39.47 -0.38 -1.74 16 4 C -0.17 -2.16 9.14 -39.14 -0.36 -2.52 16 5 C 0.10 1.63 6.67 -39.07 -0.26 1.37 16 6 O -0.27 -4.92 8.72 -39.37 -0.34 -5.27 16 7 C 0.05 0.75 5.24 36.01 0.19 0.94 16 8 C 0.45 10.23 7.86 -10.98 -0.09 10.15 16 9 O -0.55 -15.19 16.08 -14.36 -0.23 -15.42 16 10 N -0.58 -13.44 5.09 -10.96 -0.06 -13.49 16 11 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 12 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 13 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 14 N -0.87 -24.94 13.96 55.50 0.77 -24.16 16 15 Si 0.88 18.60 27.74 -169.99 -4.71 13.88 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 19 C 0.10 1.59 6.43 -82.41 -0.53 1.06 16 20 C 0.14 1.97 7.12 36.01 0.26 2.22 16 21 O -0.56 -8.38 13.64 -35.23 -0.48 -8.86 16 22 N -0.43 -6.40 10.18 -5.62 -0.06 -6.46 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.14 1.46 6.45 -52.48 -0.34 1.12 16 28 H 0.08 1.13 7.70 -51.93 -0.40 0.73 16 29 H 0.08 1.08 7.70 -51.93 -0.40 0.68 16 30 H 0.37 7.36 5.76 -40.82 -0.24 7.12 16 31 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.07 1.10 7.52 -51.93 -0.39 0.71 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.38 3.72 9.12 45.56 0.42 4.13 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -35.39 301.42 -5.19 -40.59 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -3.01 Total: 10.81 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.62 Total: 3.84 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.66 Total: -44.11 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.05 Total: -29.56 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.71 Total: 13.88 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.39 -5.19 -40.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091998828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.879 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds