Wall clock time and date at job start Mon Mar 30 2020 04:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38251 * 119.55278 * 2 1 4 4 C 1.38538 * 119.22043 * 180.02562 * 3 2 1 5 5 C 1.39139 * 118.37423 * 359.97438 * 4 3 2 6 6 O 1.35912 * 120.47319 * 180.02562 * 5 4 3 7 7 C 1.42896 * 116.99963 * 359.95187 * 6 5 4 8 8 C 1.50705 * 109.46872 * 180.02562 * 7 6 5 9 9 O 1.21290 * 119.99862 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99712 * 179.97438 * 8 7 6 11 11 C 1.37104 * 119.99951 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99502 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00121 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99997 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99900 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47134 * 90.00051 * 15 13 11 17 17 H 1.48503 * 109.47045 * 209.99853 * 15 13 11 18 18 H 1.48493 * 109.47257 * 330.00007 * 15 13 11 19 19 C 1.38707 * 119.05145 * 359.97438 * 5 4 3 20 20 C 1.50703 * 119.65846 * 180.30195 * 19 5 4 21 21 O 1.42903 * 109.46610 * 269.72489 * 20 19 5 22 22 N 1.31839 * 119.55741 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46984 * 270.01964 * 1 2 3 24 24 H 1.09000 * 109.47349 * 30.01973 * 1 2 3 25 25 H 1.09005 * 109.47224 * 150.02633 * 1 2 3 26 26 H 1.07998 * 120.39390 * 0.02562 * 3 2 1 27 27 H 1.08005 * 120.81504 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47577 * 299.99880 * 7 6 5 29 29 H 1.08997 * 109.47099 * 60.00515 * 7 6 5 30 30 H 0.97003 * 120.00259 * 0.02562 * 10 8 7 31 31 H 0.97007 * 119.99806 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.47147 * 29.71962 * 20 19 5 33 33 H 1.08995 * 109.47516 * 149.72813 * 20 19 5 34 34 H 0.96700 * 113.99409 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.2026 0.0000 4 6 3.5742 1.1946 -0.0005 5 6 4.2284 -0.0334 -0.0005 6 8 5.5863 -0.0911 -0.0005 7 6 6.2884 1.1535 -0.0016 8 6 7.7727 0.8927 -0.0021 9 8 8.1883 -0.2468 -0.0020 10 7 8.6383 1.9258 -0.0036 11 6 9.9887 1.6887 -0.0035 12 1 10.3587 0.6741 -0.0018 13 6 10.8811 2.7536 -0.0045 14 7 12.1754 2.5263 -0.0039 15 14 10.2409 4.5086 -0.0054 16 1 10.0719 4.9745 1.3944 17 1 11.2102 5.3887 -0.7064 18 1 8.9320 4.5577 -0.7049 19 6 3.4748 -1.1980 0.0006 20 6 4.1691 -2.5355 0.0075 21 8 4.3877 -2.9656 -1.3376 22 7 2.1574 -1.1468 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8903 -0.5134 26 1 1.6480 2.1374 0.0004 27 1 4.1329 2.1190 -0.0010 28 1 6.0195 1.7217 -0.8921 29 1 6.0195 1.7231 0.8879 30 1 8.3059 2.8371 -0.0040 31 1 12.7984 3.2699 -0.0050 32 1 5.1268 -2.4451 0.5202 33 1 3.5470 -3.2652 0.5257 34 1 4.8322 -3.8214 -1.4095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091998828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:36 Heat of formation + Delta-G solvation = -112.194035 kcal Electronic energy + Delta-G solvation = -19501.310499 eV Core-core repulsion = 16205.794194 eV Total energy + Delta-G solvation = -3295.516305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90699 -40.48826 -39.01590 -37.72697 -36.11685 -33.89729 -33.72642 -33.09429 -30.37019 -28.85427 -26.98937 -26.29759 -23.52683 -22.71096 -21.48341 -20.47080 -19.33528 -18.53815 -18.26681 -17.36772 -17.32688 -16.90063 -16.54077 -15.69985 -15.59991 -15.20005 -15.08071 -14.89642 -14.84338 -14.62256 -14.22811 -13.62981 -13.45725 -13.21184 -12.99719 -12.93761 -12.46535 -12.43160 -12.20789 -11.99362 -11.58897 -11.09643 -10.77910 -10.61097 -10.59120 -10.34528 -9.30673 -8.46138 -6.10059 -0.00978 0.21056 1.29406 1.34363 1.44552 1.71580 1.77250 2.21089 2.55809 2.96819 3.08310 3.11082 3.49728 3.68342 3.81520 3.92965 4.05927 4.08243 4.14882 4.16692 4.37903 4.46060 4.65171 4.78432 4.86279 4.99008 5.09887 5.16590 5.44442 5.54392 5.84597 6.12930 6.50550 6.77440 6.80325 6.94330 7.25746 7.79821 8.70896 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.004273 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.805429 B = 6551.582182 C = 7422.197259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.069 3.931 3 C -0.114 4.114 4 C -0.165 4.165 5 C 0.074 3.926 6 O -0.305 6.305 7 C 0.056 3.944 8 C 0.446 3.554 9 O -0.613 6.613 10 N -0.574 5.574 11 C -0.336 4.336 12 H 0.055 0.945 13 C -0.011 4.011 14 N -0.929 5.929 15 Si 0.966 3.034 16 H -0.253 1.253 17 H -0.274 1.274 18 H -0.226 1.226 19 C 0.071 3.929 20 C 0.137 3.863 21 O -0.585 6.585 22 N -0.457 5.457 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.182 0.818 27 H 0.174 0.826 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.395 0.605 31 H 0.282 0.718 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.331 3.798 1.025 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C -0.134 4.134 4 C -0.191 4.191 5 C 0.026 3.974 6 O -0.216 6.216 7 C -0.022 4.022 8 C 0.233 3.767 9 O -0.498 6.498 10 N -0.216 5.216 11 C -0.465 4.465 12 H 0.074 0.926 13 C -0.210 4.210 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.178 1.178 17 H -0.199 1.199 18 H -0.149 1.149 19 C -0.067 4.067 20 C 0.059 3.941 21 O -0.393 6.393 22 N -0.169 5.169 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.086 0.914 26 H 0.199 0.801 27 H 0.191 0.809 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.231 0.769 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -24.440 2.701 0.893 24.605 hybrid contribution 1.495 0.872 0.121 1.734 sum -22.946 3.572 1.014 23.244 Atomic orbital electron populations 1.20726 0.85948 1.04349 1.04012 1.21912 0.98923 0.87952 0.98180 1.22293 0.93246 1.00615 0.97214 1.22176 0.96598 0.97125 1.03217 1.20189 0.83135 0.95999 0.98125 1.86194 1.15219 1.32057 1.88176 1.22527 0.88122 0.85548 1.06024 1.20324 0.88462 0.85169 0.82736 1.90587 1.80268 1.23840 1.55100 1.41760 1.05254 1.07669 1.66950 1.18993 0.80917 0.95290 1.51291 0.92643 1.26171 0.94833 1.04555 0.95461 1.69799 1.03008 1.34889 1.49123 0.85361 0.80167 0.75760 0.80231 1.17752 1.19908 1.14907 1.20444 0.89058 0.93655 1.03593 1.20661 0.97841 0.91392 0.84253 1.86440 1.82923 1.43475 1.26459 1.67323 1.07198 1.31158 1.11206 0.89334 0.88073 0.91353 0.80077 0.80882 0.86493 0.85940 0.76888 0.90833 0.92538 0.90523 0.75008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 10.17 71.24 0.72 -0.47 16 2 C 0.07 1.47 6.78 42.56 0.29 1.76 16 3 C -0.11 -1.97 9.73 22.34 0.22 -1.75 16 4 C -0.17 -3.50 9.14 22.56 0.21 -3.29 16 5 C 0.07 2.23 6.67 22.60 0.15 2.38 16 6 O -0.30 -11.02 8.72 -73.52 -0.64 -11.66 16 7 C 0.06 1.73 5.24 71.24 0.37 2.11 16 8 C 0.45 20.40 7.86 87.66 0.69 21.09 16 9 O -0.61 -35.58 16.08 15.98 0.26 -35.33 16 10 N -0.57 -26.32 5.09 -306.99 -1.56 -27.88 16 11 C -0.34 -19.39 10.16 84.04 0.85 -18.54 16 12 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 13 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 14 N -0.93 -54.86 13.96 21.66 0.30 -54.55 16 15 Si 0.97 36.65 27.74 68.60 1.90 38.55 16 16 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 17 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 18 H -0.23 -6.96 6.52 99.48 0.65 -6.31 16 19 C 0.07 2.22 6.43 42.67 0.27 2.49 16 20 C 0.14 4.13 7.12 71.24 0.51 4.63 16 21 O -0.58 -18.12 13.64 -148.98 -2.03 -20.15 16 22 N -0.46 -12.99 10.18 -171.70 -1.75 -14.74 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 25 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 27 H 0.17 2.48 6.45 -2.91 -0.02 2.47 16 28 H 0.12 2.77 7.70 -2.39 -0.02 2.75 16 29 H 0.12 2.75 7.70 -2.39 -0.02 2.73 16 30 H 0.39 14.26 5.76 -92.71 -0.53 13.73 16 31 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 32 H 0.06 1.84 7.52 -2.39 -0.02 1.82 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.40 8.32 9.12 -74.06 -0.68 7.64 16 Total: -1.00 -85.61 301.42 1.12 -84.49 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.11 Total: 30.97 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 4.75 Total: 10.30 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -3.01 Total: -97.17 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: -2.42 Total: -67.14 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 1.90 Total: 38.55 kcal Total: -85.61 1.12 -84.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091998828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.703 kcal (2) G-P(sol) polarization free energy of solvation -85.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds