Wall clock time and date at job start Mon Mar 30 2020 05:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47230 * 180.02562 * 10 9 7 12 12 C 1.47481 * 110.99763 * 265.97124 * 11 10 9 13 13 C 1.53520 * 87.93176 * 221.29850 * 12 11 10 14 14 N 1.46499 * 114.17018 * 139.67716 * 13 12 11 15 15 C 1.34779 * 126.58407 * 350.86284 * 14 13 12 16 16 C 1.36675 * 106.83546 * 179.85643 * 15 14 13 17 17 C 1.47380 * 125.78409 * 180.16018 * 16 15 14 18 18 O 1.21516 * 119.99594 * 0.28299 * 17 16 15 19 19 O 1.34750 * 120.00104 * 180.28478 * 17 16 15 20 20 N 1.34445 * 108.43128 * 0.42416 * 16 15 14 21 21 N 1.28750 * 109.51711 * 359.73745 * 20 16 15 22 22 C 1.47483 * 110.99789 * 170.00432 * 11 10 9 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 27 27 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 28 28 H 1.08999 * 113.48150 * 336.06473 * 12 11 10 29 29 H 1.08996 * 113.47587 * 106.53610 * 12 11 10 30 30 H 1.08998 * 114.16497 * 272.37998 * 13 12 11 31 31 H 1.07995 * 126.58542 * 359.97235 * 15 14 13 32 32 H 0.96705 * 116.99957 * 179.97438 * 19 17 16 33 33 H 1.09004 * 113.47068 * 253.46910 * 22 11 10 34 34 H 1.08994 * 113.47874 * 23.93331 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0077 12 6 1.3361 -5.4383 1.3827 13 6 1.6521 -6.8425 0.8487 14 7 2.5033 -7.6428 1.7325 15 6 3.1473 -7.2109 2.8348 16 6 3.8165 -8.2860 3.3491 17 6 4.6555 -8.2798 4.5607 18 8 4.7939 -7.2548 5.1986 19 8 5.2691 -9.4106 4.9612 20 7 3.5843 -9.3488 2.5591 21 7 2.8095 -9.0036 1.5905 22 6 2.4197 -6.0703 -0.2335 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 2.8678 -3.6059 -0.8902 27 1 2.8760 -3.6028 0.8897 28 1 2.0828 -5.0613 2.0815 29 1 0.3176 -5.3351 1.7569 30 1 0.7825 -7.3850 0.4778 31 1 3.1353 -6.2083 3.2360 32 1 5.8092 -9.3573 5.7616 33 1 2.3195 -6.5027 -1.2291 34 1 3.4556 -5.8620 0.0340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092698638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:01 Heat of formation + Delta-G solvation = 45.489064 kcal Electronic energy + Delta-G solvation = -19274.836494 eV Core-core repulsion = 16018.450592 eV Total energy + Delta-G solvation = -3256.385902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.63195 -40.33328 -39.88313 -36.35191 -34.48245 -33.23951 -31.44161 -30.92830 -27.57266 -26.34524 -25.07802 -24.28938 -22.77576 -21.47130 -20.76569 -20.06145 -18.45154 -17.88077 -16.69260 -16.61800 -16.26254 -15.87122 -15.23770 -15.09460 -14.71220 -14.47753 -13.88660 -13.43896 -13.18984 -12.91722 -12.53702 -12.25256 -11.88094 -11.86295 -11.70498 -11.31316 -11.24391 -11.06298 -10.96884 -10.61366 -10.45261 -10.02848 -9.67608 -9.59189 -9.26519 -8.82236 -8.44457 -6.10043 -4.13959 0.75603 1.26274 1.64694 2.68060 2.75175 3.25747 3.32533 3.34873 3.66419 3.90106 3.96486 4.35069 4.41606 4.46176 4.74710 4.85521 4.97860 5.09425 5.26147 5.33312 5.41567 5.48951 5.62773 5.67447 5.99139 6.10685 6.13104 6.44362 6.75790 6.98337 7.49298 7.58109 7.69997 7.75583 7.91751 8.27743 8.92895 9.50883 11.01066 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.003640 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.830436 B = 7689.982628 C = 8468.070569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.033 3.967 10 C 0.028 3.972 11 N -0.455 5.455 12 C -0.002 4.002 13 C 0.110 3.890 14 N -0.340 5.340 15 C 0.108 3.892 16 C -0.098 4.098 17 C 0.578 3.422 18 O -0.511 6.511 19 O -0.498 6.498 20 N -0.186 5.186 21 N -0.057 5.057 22 C -0.008 4.008 23 H 0.262 0.738 24 H 0.017 0.983 25 H 0.026 0.974 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.150 0.850 31 H 0.208 0.792 32 H 0.416 0.584 33 H 0.102 0.898 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -16.263 6.258 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.099 4.099 11 N -0.178 5.178 12 C -0.132 4.132 13 C 0.008 3.992 14 N -0.123 5.123 15 C -0.050 4.050 16 C -0.235 4.235 17 C 0.420 3.580 18 O -0.398 6.398 19 O -0.309 6.309 20 N -0.061 5.061 21 N -0.037 5.037 22 C -0.138 4.138 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.168 0.832 31 H 0.225 0.775 32 H 0.275 0.725 33 H 0.120 0.880 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.966 -16.963 4.757 18.304 hybrid contribution 1.600 1.987 1.510 2.964 sum 6.566 -14.977 6.267 17.512 Atomic orbital electron populations 1.69966 1.06058 1.26790 1.50153 1.24992 0.94845 0.99278 0.95064 0.86580 0.79810 0.83340 0.78198 1.20565 1.21119 1.19874 1.21151 0.92960 0.90969 1.51608 0.92751 1.18976 0.93697 0.89669 0.98073 1.22988 0.97357 0.89401 1.00154 1.69162 1.32819 1.02050 1.13795 1.24417 1.04739 0.89504 0.94590 1.23798 0.93984 0.90123 0.91259 1.50720 1.33013 1.09789 1.18790 1.23334 0.92346 1.01252 0.88035 1.20104 1.10744 0.91432 1.01249 1.19063 0.76240 0.80747 0.81969 1.90966 1.60812 1.33284 1.54770 1.84634 1.61183 1.37189 1.47847 1.74782 1.07420 1.24129 0.99744 1.82085 1.14755 0.89651 1.17233 1.24339 0.96928 0.92729 0.99805 0.92845 0.96481 0.95550 0.91451 0.94448 0.90086 0.87480 0.83216 0.77535 0.72538 0.87972 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.81 5.30 -27.88 -0.15 0.66 16 10 C 0.03 0.52 4.75 -3.83 -0.02 0.50 16 11 N -0.46 -6.81 6.33 -244.64 -1.55 -8.36 16 12 C 0.00 -0.03 7.07 -7.54 -0.05 -0.08 16 13 C 0.11 1.13 5.42 -67.71 -0.37 0.76 16 14 N -0.34 -3.81 3.85 -54.28 -0.21 -4.01 16 15 C 0.11 1.17 10.49 -16.82 -0.18 0.99 16 16 C -0.10 -1.19 7.02 -83.57 -0.59 -1.78 16 17 C 0.58 6.55 8.33 34.45 0.29 6.83 16 18 O -0.51 -6.71 17.65 -19.28 -0.34 -7.05 16 19 O -0.50 -4.38 13.43 -40.63 -0.55 -4.92 16 20 N -0.19 -2.52 12.39 32.83 0.41 -2.12 16 21 N -0.06 -0.75 13.78 60.35 0.83 0.08 16 22 C -0.01 -0.09 7.49 -7.55 -0.06 -0.15 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 27 H 0.04 0.66 7.30 -51.93 -0.38 0.28 16 28 H 0.08 0.91 5.71 -51.93 -0.30 0.61 16 29 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.15 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.21 1.78 6.81 -52.49 -0.36 1.42 16 32 H 0.42 1.44 9.11 45.56 0.42 1.85 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -32.85 303.72 -5.75 -38.59 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -3.10 Total: -2.23 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.53 Total: -5.26 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.22 Total: -39.67 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.89 Total: -11.97 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.85 -5.75 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092698638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.083 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds