Wall clock time and date at job start Mon Mar 30 2020 04:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00043 * 2 1 4 4 C 1.50697 * 109.47574 * 270.00009 * 3 2 1 5 5 H 1.08004 * 119.99657 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00111 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00267 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99904 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47058 * 60.00503 * 8 6 4 10 10 H 1.48497 * 109.47095 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47327 * 300.00351 * 8 6 4 12 12 C 1.34778 * 120.00207 * 180.02562 * 2 1 3 13 13 O 1.21694 * 120.00048 * 187.63810 * 12 2 1 14 14 C 1.46681 * 119.99709 * 7.63302 * 12 2 1 15 15 C 1.37868 * 126.23356 * 353.51132 * 14 12 2 16 16 C 1.39840 * 107.08346 * 180.13929 * 15 14 12 17 17 C 1.35453 * 107.86699 * 359.61094 * 16 15 14 18 18 N 1.35536 * 108.86754 * 0.24045 * 17 16 15 19 19 C 1.46506 * 125.67722 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.46705 * 265.81013 * 19 18 17 21 21 O 1.20818 * 120.00486 * 359.97438 * 20 19 18 22 22 O 1.34234 * 119.99525 * 179.97438 * 20 19 18 23 23 H 1.08998 * 109.47044 * 246.55764 * 1 2 3 24 24 H 1.08998 * 109.47466 * 6.55973 * 1 2 3 25 25 H 1.09005 * 109.47072 * 126.55832 * 1 2 3 26 26 H 1.08995 * 109.47006 * 30.00178 * 3 2 1 27 27 H 1.09003 * 109.47295 * 149.99850 * 3 2 1 28 28 H 0.96994 * 120.00031 * 179.97438 * 7 6 4 29 29 H 1.07996 * 126.45850 * 359.97438 * 15 14 12 30 30 H 1.08000 * 126.06733 * 179.87556 * 16 15 14 31 31 H 1.07996 * 125.56830 * 180.22448 * 17 16 15 32 32 H 1.09006 * 109.46621 * 25.80804 * 19 18 17 33 33 H 1.08999 * 109.47149 * 145.80877 * 19 18 17 34 34 H 0.96697 * 117.00041 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6726 7 7 3.5533 3.6182 -0.6729 8 14 3.4367 3.4177 -3.4338 9 1 2.1390 3.5951 -4.1334 10 1 4.1793 4.7037 -3.4337 11 1 4.2394 2.3832 -4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3477 -1.1719 0.1396 14 6 1.4152 -2.4318 -0.1698 15 6 0.0460 -2.5878 -0.2125 16 6 -0.2068 -3.9525 -0.3829 17 6 0.9859 -4.5911 -0.4489 18 7 1.9795 -3.6782 -0.3207 19 6 3.4152 -3.9696 -0.3391 20 6 3.9099 -4.1463 1.0734 21 8 3.1423 -4.0392 2.0003 22 8 5.2035 -4.4225 1.3018 23 1 -0.3633 -0.4088 0.9428 24 1 -0.3634 1.0209 -0.1174 25 1 -0.3633 -0.6121 -0.8255 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0301 4.4440 -0.8502 29 1 -0.6921 -1.8041 -0.1273 30 1 -1.1803 -4.4148 -0.4541 31 1 1.1229 -5.6541 -0.5816 32 1 3.5929 -4.8851 -0.9035 33 1 3.9477 -3.1433 -0.8099 34 1 5.4740 -4.5267 2.2243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092722995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:43 Heat of formation + Delta-G solvation = -46.819304 kcal Electronic energy + Delta-G solvation = -20406.045100 eV Core-core repulsion = 17113.363656 eV Total energy + Delta-G solvation = -3292.681444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43537 -39.91485 -38.34952 -36.16380 -35.08929 -33.11526 -32.49152 -29.58653 -27.99026 -27.19643 -26.06260 -23.34685 -22.26738 -20.89950 -20.34815 -18.75525 -18.22954 -17.03844 -16.53135 -16.45785 -16.01352 -15.42797 -15.15848 -14.66505 -14.22743 -13.77963 -13.64407 -13.24493 -12.80955 -12.74964 -12.54287 -12.25062 -12.10444 -12.00198 -11.53799 -11.32876 -11.03261 -10.76072 -10.71012 -10.44767 -10.14981 -9.68075 -9.10616 -8.67376 -8.44949 -8.01077 -7.63231 -6.05854 -4.11484 1.72102 2.16145 2.54687 2.93872 3.21924 3.31012 3.35231 3.38153 3.96437 4.04114 4.43403 4.60068 4.95500 5.15140 5.15518 5.19155 5.28968 5.57772 5.58791 5.74366 5.94473 6.18221 6.25633 6.33373 6.41782 6.87566 7.09642 7.13672 7.29812 7.42519 7.52444 7.81573 7.90451 8.20289 8.36044 8.85471 9.02563 9.53624 11.02007 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.005846 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.100900 B = 4788.108759 C = 5395.546994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.584 5.584 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.576 3.424 13 O -0.557 6.557 14 C -0.018 4.018 15 C -0.169 4.169 16 C -0.203 4.203 17 C 0.006 3.994 18 N -0.408 5.408 19 C 0.115 3.885 20 C 0.473 3.527 21 O -0.499 6.499 22 O -0.513 6.513 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.264 0.736 29 H 0.169 0.831 30 H 0.140 0.860 31 H 0.164 0.836 32 H 0.129 0.871 33 H 0.148 0.852 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -16.374 0.705 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.314 5.314 3 C 0.128 3.872 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.364 3.636 13 O -0.439 6.439 14 C -0.131 4.131 15 C -0.194 4.194 16 C -0.228 4.228 17 C -0.126 4.126 18 N -0.084 5.084 19 C -0.009 4.009 20 C 0.313 3.687 21 O -0.385 6.385 22 O -0.325 6.325 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.186 0.814 30 H 0.158 0.842 31 H 0.181 0.819 32 H 0.147 0.853 33 H 0.165 0.835 34 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.698 -16.121 0.685 16.554 hybrid contribution 0.345 0.241 -0.308 0.521 sum -3.353 -15.880 0.376 16.235 Atomic orbital electron populations 1.22303 0.81374 1.03344 1.00395 1.47795 1.06384 1.07040 1.70225 1.19388 0.92793 0.77449 0.97619 1.21410 1.36791 1.06481 0.92173 0.92386 1.24936 0.95295 0.96307 0.97495 1.69927 1.38190 1.14344 1.30824 0.86540 0.78401 0.77818 0.84552 1.20155 1.21140 1.20220 1.16909 0.86383 0.82421 0.77924 1.90721 1.14017 1.87234 1.51879 1.20511 0.92781 0.85928 1.13841 1.22445 0.93774 0.97567 1.05568 1.20836 0.97004 0.94139 1.10793 1.21877 0.87177 0.94737 1.08781 1.43329 1.04434 1.06368 1.54283 1.21223 0.80616 1.07016 0.92020 1.23433 0.80112 0.72438 0.92702 1.90762 1.56668 1.45592 1.45465 1.84470 1.28102 1.82942 1.36987 0.92874 0.90455 0.91082 0.94639 0.93555 0.92596 0.81378 0.84178 0.81882 0.85329 0.83480 0.72850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 8.61 59.84 0.52 1.68 16 2 N -0.58 -13.08 2.86 -184.52 -0.53 -13.61 16 3 C 0.25 6.56 5.17 -5.20 -0.03 6.54 16 4 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.58 13.00 7.61 -12.85 -0.10 12.90 16 13 O -0.56 -14.16 14.30 5.19 0.07 -14.09 16 14 C -0.02 -0.34 6.83 -81.98 -0.56 -0.90 16 15 C -0.17 -2.60 8.85 -39.12 -0.35 -2.95 16 16 C -0.20 -2.67 10.81 -39.98 -0.43 -3.10 16 17 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 18 N -0.41 -6.38 2.25 -114.14 -0.26 -6.64 16 19 C 0.11 1.55 5.98 -5.19 -0.03 1.52 16 20 C 0.47 7.00 8.26 36.01 0.30 7.30 16 21 O -0.50 -9.18 17.19 -18.74 -0.32 -9.50 16 22 O -0.51 -5.94 13.42 -39.27 -0.53 -6.46 16 23 H 0.05 0.78 7.34 -51.93 -0.38 0.40 16 24 H 0.08 1.27 7.85 -51.93 -0.41 0.86 16 25 H 0.07 1.06 5.50 -51.93 -0.29 0.78 16 26 H 0.04 0.95 7.98 -51.93 -0.41 0.53 16 27 H 0.05 1.39 7.33 -51.93 -0.38 1.01 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.17 2.26 4.11 -52.49 -0.22 2.04 16 30 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.13 1.09 8.13 -51.93 -0.42 0.67 16 33 H 0.15 2.26 6.73 -51.93 -0.35 1.91 16 34 H 0.41 3.06 9.10 45.56 0.41 3.47 16 LS Contribution 298.80 15.07 4.50 4.50 Total: -1.00 -37.04 298.80 -5.47 -42.51 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -2.83 Total: 3.23 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -1.29 Total: 9.17 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.05 Total: -46.09 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.78 Total: -30.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -37.04 -5.47 -42.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092722995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.311 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds