Wall clock time and date at job start Mon Mar 30 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00043 * 2 1 4 4 C 1.50697 * 109.47574 * 270.00009 * 3 2 1 5 5 H 1.08004 * 119.99657 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00111 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00267 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99904 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47058 * 60.00503 * 8 6 4 10 10 H 1.48497 * 109.47095 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47327 * 300.00351 * 8 6 4 12 12 C 1.34778 * 120.00207 * 180.02562 * 2 1 3 13 13 O 1.21694 * 120.00048 * 187.63810 * 12 2 1 14 14 C 1.46681 * 119.99709 * 7.63302 * 12 2 1 15 15 C 1.37868 * 126.23356 * 353.51132 * 14 12 2 16 16 C 1.39840 * 107.08346 * 180.13929 * 15 14 12 17 17 C 1.35453 * 107.86699 * 359.61094 * 16 15 14 18 18 N 1.35536 * 108.86754 * 0.24045 * 17 16 15 19 19 C 1.46506 * 125.67722 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.46705 * 265.81013 * 19 18 17 21 21 O 1.20818 * 120.00486 * 359.97438 * 20 19 18 22 22 O 1.34234 * 119.99525 * 179.97438 * 20 19 18 23 23 H 1.08998 * 109.47044 * 246.55764 * 1 2 3 24 24 H 1.08998 * 109.47466 * 6.55973 * 1 2 3 25 25 H 1.09005 * 109.47072 * 126.55832 * 1 2 3 26 26 H 1.08995 * 109.47006 * 30.00178 * 3 2 1 27 27 H 1.09003 * 109.47295 * 149.99850 * 3 2 1 28 28 H 0.96994 * 120.00031 * 179.97438 * 7 6 4 29 29 H 1.07996 * 126.45850 * 359.97438 * 15 14 12 30 30 H 1.08000 * 126.06733 * 179.87556 * 16 15 14 31 31 H 1.07996 * 125.56830 * 180.22448 * 17 16 15 32 32 H 1.09006 * 109.46621 * 25.80804 * 19 18 17 33 33 H 1.08999 * 109.47149 * 145.80877 * 19 18 17 34 34 H 0.96697 * 117.00041 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6726 7 7 3.5533 3.6182 -0.6729 8 14 3.4367 3.4177 -3.4338 9 1 2.1390 3.5951 -4.1334 10 1 4.1793 4.7037 -3.4337 11 1 4.2394 2.3832 -4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3477 -1.1719 0.1396 14 6 1.4152 -2.4318 -0.1698 15 6 0.0460 -2.5878 -0.2125 16 6 -0.2068 -3.9525 -0.3829 17 6 0.9859 -4.5911 -0.4489 18 7 1.9795 -3.6782 -0.3207 19 6 3.4152 -3.9696 -0.3391 20 6 3.9099 -4.1463 1.0734 21 8 3.1423 -4.0392 2.0003 22 8 5.2035 -4.4225 1.3018 23 1 -0.3633 -0.4088 0.9428 24 1 -0.3634 1.0209 -0.1174 25 1 -0.3633 -0.6121 -0.8255 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0301 4.4440 -0.8502 29 1 -0.6921 -1.8041 -0.1273 30 1 -1.1803 -4.4148 -0.4541 31 1 1.1229 -5.6541 -0.5816 32 1 3.5929 -4.8851 -0.9035 33 1 3.9477 -3.1433 -0.8099 34 1 5.4740 -4.5267 2.2243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092722995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:42 Heat of formation + Delta-G solvation = -73.904597 kcal Electronic energy + Delta-G solvation = -20407.219606 eV Core-core repulsion = 17113.363656 eV Total energy + Delta-G solvation = -3293.855950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.59807 -41.07320 -39.97026 -37.26413 -36.80739 -34.91967 -33.96379 -31.12467 -29.25645 -28.75772 -27.61575 -25.27426 -23.37222 -22.32258 -21.57756 -20.07352 -19.34199 -18.70773 -18.29869 -17.66663 -17.26339 -17.05868 -16.65683 -16.34442 -15.91128 -14.98370 -14.91279 -14.56583 -14.21935 -14.07679 -13.89459 -13.75216 -13.59747 -13.40153 -13.08808 -12.95918 -12.66591 -12.61490 -12.24423 -11.91318 -11.89481 -11.71715 -10.81007 -10.65369 -9.79554 -9.50661 -9.09376 -8.23607 -6.39964 0.47104 1.02958 1.37117 1.41168 1.46424 1.49116 1.81350 2.15132 2.35276 2.50060 2.54918 3.05429 3.67562 3.71886 4.08014 4.13006 4.23176 4.38002 4.47868 4.56040 4.65404 4.88457 4.92629 5.16444 5.21396 5.31021 5.44567 5.52354 5.76014 5.90623 5.95929 6.02168 6.31461 6.65136 6.70234 6.81535 7.22387 7.37846 8.83309 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.005846 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.100900 B = 4788.108759 C = 5395.546994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.596 5.596 3 C 0.262 3.738 4 C -0.546 4.546 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.929 5.929 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.564 3.436 13 O -0.605 6.605 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.211 4.211 17 C 0.029 3.971 18 N -0.416 5.416 19 C 0.110 3.890 20 C 0.475 3.525 21 O -0.542 6.542 22 O -0.505 6.505 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.027 0.973 27 H -0.001 1.001 28 H 0.268 0.732 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.211 0.789 32 H 0.184 0.816 33 H 0.122 0.878 34 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -18.618 -0.968 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.326 5.326 3 C 0.141 3.859 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.795 3.205 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.355 3.645 13 O -0.490 6.490 14 C -0.185 4.185 15 C -0.180 4.180 16 C -0.235 4.235 17 C -0.104 4.104 18 N -0.092 5.092 19 C -0.013 4.013 20 C 0.318 3.682 21 O -0.432 6.432 22 O -0.318 6.318 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.113 0.887 26 H 0.045 0.955 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.200 0.800 30 H 0.194 0.806 31 H 0.227 0.773 32 H 0.201 0.799 33 H 0.140 0.860 34 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -5.282 -18.377 -0.982 19.147 hybrid contribution 0.839 0.820 0.279 1.206 sum -4.443 -17.558 -0.703 18.125 Atomic orbital electron populations 1.22583 0.78097 1.04177 1.02625 1.47774 1.08446 1.05756 1.70612 1.18851 0.91140 0.79457 0.96446 1.21652 1.37253 1.06829 0.92678 0.92652 1.25894 0.94699 0.96225 1.02240 1.70056 1.38699 1.14798 1.33267 0.85418 0.78927 0.77384 0.78791 1.18337 1.20266 1.20155 1.17585 0.86197 0.83851 0.76826 1.90665 1.16152 1.88115 1.54090 1.20053 0.93813 0.85435 1.19228 1.22773 0.92607 0.99497 1.03099 1.21293 0.98808 0.92892 1.10464 1.22782 0.86329 0.96303 1.04969 1.43546 1.05563 1.05898 1.54152 1.21454 0.79748 1.08445 0.91638 1.23741 0.80420 0.71220 0.92860 1.90737 1.57873 1.47808 1.46771 1.84437 1.26567 1.82117 1.38675 0.90483 0.90430 0.88716 0.95499 0.98334 0.92283 0.79965 0.80648 0.77275 0.79851 0.85999 0.70835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.21 8.61 127.77 1.10 3.31 16 2 N -0.60 -27.70 2.86 -855.90 -2.45 -30.15 16 3 C 0.26 14.77 5.17 85.63 0.44 15.21 16 4 C -0.55 -32.02 9.39 25.60 0.24 -31.78 16 5 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 6 C 0.01 0.50 5.46 84.65 0.46 0.96 16 7 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 8 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 9 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 C 0.56 26.52 7.61 86.45 0.66 27.18 16 13 O -0.61 -32.79 14.30 -4.33 -0.06 -32.85 16 14 C -0.07 -2.71 6.83 40.35 0.28 -2.44 16 15 C -0.15 -4.39 8.85 22.57 0.20 -4.19 16 16 C -0.21 -4.64 10.81 22.01 0.24 -4.40 16 17 C 0.03 0.62 11.37 83.48 0.95 1.57 16 18 N -0.42 -12.26 2.25 -515.04 -1.16 -13.42 16 19 C 0.11 2.85 5.98 85.63 0.51 3.36 16 20 C 0.48 13.88 8.26 71.24 0.59 14.47 16 21 O -0.54 -20.04 17.19 21.99 0.38 -19.66 16 22 O -0.50 -11.31 13.42 -51.46 -0.69 -12.00 16 23 H 0.08 2.17 7.34 -2.39 -0.02 2.15 16 24 H 0.08 2.53 7.85 -2.39 -0.02 2.51 16 25 H 0.09 2.68 5.50 -2.38 -0.01 2.67 16 26 H 0.03 1.53 7.98 -2.39 -0.02 1.51 16 27 H 0.00 -0.10 7.33 -2.39 -0.02 -0.11 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.18 4.40 4.11 -2.91 -0.01 4.39 16 30 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.21 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.18 2.48 8.13 -2.38 -0.02 2.46 16 33 H 0.12 3.86 6.73 -2.39 -0.02 3.84 16 34 H 0.43 6.09 9.10 -74.06 -0.67 5.42 16 Total: -1.00 -85.53 298.80 4.47 -81.06 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.47 Total: 13.35 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 5.67 Total: 23.25 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -3.32 Total: -100.11 kcal Atomic # 8 Polarization: -64.14 SS G_CDS: -0.37 Total: -64.51 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -85.53 4.47 -81.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092722995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.156 kcal (2) G-P(sol) polarization free energy of solvation -85.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds