Wall clock time and date at job start Mon Mar 30 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47616 * 2 1 4 4 C 1.50698 * 109.47101 * 120.00659 * 2 1 3 5 5 H 1.08003 * 120.00401 * 120.00206 * 4 2 1 6 6 C 1.37880 * 119.99867 * 299.99831 * 4 2 1 7 7 N 1.31511 * 119.99897 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46956 * 90.00297 * 8 6 4 10 10 H 1.48496 * 109.47192 * 210.00212 * 8 6 4 11 11 H 1.48498 * 109.47207 * 330.00475 * 8 6 4 12 12 N 1.46501 * 109.47032 * 240.00394 * 2 1 3 13 13 C 1.46501 * 119.99943 * 300.00046 * 12 2 1 14 14 C 1.38993 * 120.00138 * 120.00226 * 12 2 1 15 15 C 1.39002 * 119.65886 * 185.00024 * 14 12 2 16 16 C 1.38515 * 119.25899 * 179.97438 * 15 14 12 17 17 C 1.38553 * 118.58548 * 359.97438 * 16 15 14 18 18 N 1.48009 * 120.36314 * 179.97438 * 17 16 15 19 19 O 1.21795 * 120.00221 * 6.21260 * 18 17 16 20 20 O 1.21803 * 119.99520 * 186.21521 * 18 17 16 21 21 C 1.38955 * 119.26346 * 359.97438 * 17 16 15 22 22 N 1.39000 * 119.65841 * 179.97438 * 21 17 16 23 23 N 1.32471 * 119.65902 * 5.27152 * 14 12 2 24 24 H 1.09003 * 109.47364 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47241 * 299.99738 * 1 2 3 26 26 H 1.09000 * 109.47209 * 59.99379 * 1 2 3 27 27 H 0.96998 * 120.00251 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47225 * 270.00028 * 13 12 2 29 29 H 1.08999 * 109.47243 * 30.00237 * 13 12 2 30 30 H 1.09001 * 109.47235 * 149.99871 * 13 12 2 31 31 H 1.07998 * 120.37085 * 0.02562 * 15 14 12 32 32 H 1.07998 * 120.70688 * 179.97438 * 16 15 14 33 33 H 0.97001 * 119.99901 * 24.44903 * 22 21 17 34 34 H 0.96995 * 120.00502 * 204.44776 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 2.1379 -0.8593 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9950 3.9071 11 1 0.8491 2.1772 1.4924 12 7 2.0182 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.8174 -0.0150 -2.1111 15 6 3.1906 -0.6429 -3.2937 16 6 3.9866 0.0381 -4.1998 17 6 4.3845 1.3294 -3.8931 18 7 5.2359 2.0930 -4.8327 19 8 5.4972 1.6325 -5.9296 20 8 5.6752 3.1819 -4.5089 21 6 3.9754 1.8994 -2.6937 22 7 4.3703 3.1941 -2.3775 23 7 3.2199 1.2186 -1.8445 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.9040 -0.5279 4.4375 28 1 2.4156 -2.7377 -0.9719 29 1 0.6903 -2.3001 -0.9848 30 1 1.6236 -2.2851 -2.5003 31 1 2.8628 -1.6502 -3.5041 32 1 4.2907 -0.4274 -5.1257 33 1 4.6065 3.8153 -3.0841 34 1 4.4096 3.4764 -1.4504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094261113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:37 Heat of formation + Delta-G solvation = 59.202759 kcal Electronic energy + Delta-G solvation = -20309.250214 eV Core-core repulsion = 17053.458983 eV Total energy + Delta-G solvation = -3255.791231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88770 -40.19211 -37.27965 -36.34890 -34.46540 -33.02424 -32.32992 -30.83596 -29.08178 -27.02882 -25.43802 -24.84882 -23.24549 -22.17826 -20.31291 -18.91955 -18.43335 -17.62755 -17.43643 -16.96763 -16.77493 -15.85097 -15.32492 -15.17759 -14.28395 -13.89373 -13.62296 -13.40049 -13.21442 -12.90548 -12.41803 -11.93847 -11.75913 -11.52215 -11.27155 -10.99844 -10.90606 -10.83214 -10.79360 -10.37532 -10.32561 -9.78291 -9.53407 -9.31963 -8.78941 -8.41598 -7.42342 -6.29845 -4.32331 0.36697 1.40504 1.77690 1.84929 3.05744 3.10323 3.23810 3.25004 3.65860 3.81010 4.19501 4.51145 4.82966 4.92694 5.01658 5.14175 5.47396 5.60730 5.75175 5.83241 5.95337 6.07295 6.11736 6.13273 6.26022 6.64245 6.69397 6.79645 7.15899 7.20497 7.39588 7.61704 7.68216 8.03715 8.27272 8.31345 8.70656 9.29009 10.82649 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027498 B = 0.005575 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.997232 B = 5021.379603 C = 5597.248066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.230 3.770 3 H 0.073 0.927 4 C -0.533 4.533 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.547 5.547 13 C 0.089 3.911 14 C 0.488 3.512 15 C -0.286 4.286 16 C 0.051 3.949 17 C -0.236 4.236 18 N 0.073 4.927 19 O -0.197 6.197 20 O -0.217 6.217 21 C 0.519 3.481 22 N -0.832 5.832 23 N -0.580 5.580 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.268 0.732 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.420 0.580 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 1.664 -12.132 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.128 3.872 3 H 0.091 0.909 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.249 5.249 13 C -0.054 4.054 14 C 0.243 3.757 15 C -0.312 4.312 16 C 0.026 3.974 17 C -0.334 4.334 18 N 0.575 4.425 19 O -0.405 6.405 20 O -0.415 6.415 21 C 0.270 3.730 22 N -0.384 5.384 23 N -0.310 5.310 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.259 0.741 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.333 1.578 -10.615 10.814 hybrid contribution -0.077 0.837 -0.453 0.955 sum -1.410 2.415 -11.067 11.415 Atomic orbital electron populations 1.22513 0.98841 1.01321 0.99565 1.19546 0.90038 0.95385 0.82216 0.90946 1.21096 1.33164 1.14494 0.88319 0.90305 1.24850 0.95565 0.96569 0.95560 1.69859 1.44757 1.40046 0.98073 0.86922 0.80447 0.83717 0.77622 1.20373 1.21989 1.18807 1.47267 1.45905 1.10842 1.20863 1.21798 1.02344 0.80776 1.00463 1.18355 0.84356 0.86673 0.86328 1.21259 1.10253 1.03848 0.95859 1.20787 0.89037 0.89490 0.98123 1.21128 1.17009 0.97642 0.97570 1.43185 0.98569 1.00061 1.00703 1.94467 1.64344 1.73003 1.08730 1.94256 1.56531 1.09144 1.81601 1.17523 0.84240 0.86159 0.85034 1.42993 1.72653 1.09760 1.13016 1.67138 1.20658 1.09919 1.33287 0.92379 0.92775 0.94703 0.92239 0.91876 0.89931 0.91770 0.83370 0.82918 0.74100 0.76085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.65 37.15 0.32 -2.88 16 2 C 0.23 4.95 2.26 -69.09 -0.16 4.80 16 3 H 0.07 1.69 5.87 -51.93 -0.30 1.39 16 4 C -0.53 -13.65 8.95 -34.44 -0.31 -13.96 16 5 H 0.08 2.21 7.89 -52.48 -0.41 1.80 16 6 C 0.08 2.09 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 8 Si 0.88 20.39 24.37 -169.99 -4.14 16.25 16 9 H -0.28 -6.17 6.87 56.52 0.39 -5.78 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.26 -5.88 6.53 56.52 0.37 -5.51 16 12 N -0.55 -9.91 2.87 -175.44 -0.50 -10.41 16 13 C 0.09 1.27 9.52 59.85 0.57 1.84 16 14 C 0.49 8.44 7.37 -155.02 -1.14 7.30 16 15 C -0.29 -3.94 9.27 -39.20 -0.36 -4.30 16 16 C 0.05 0.70 9.66 -39.36 -0.38 0.32 16 17 C -0.24 -3.72 6.88 -79.57 -0.55 -4.27 16 18 N 0.07 1.20 4.45 34.15 0.15 1.35 16 19 O -0.20 -3.27 18.53 -29.46 -0.55 -3.82 16 20 O -0.22 -3.51 15.89 -29.46 -0.47 -3.98 16 21 C 0.52 8.54 7.73 -155.01 -1.20 7.34 16 22 N -0.83 -11.52 8.54 31.11 0.27 -11.26 16 23 N -0.58 -10.67 8.88 -11.62 -0.10 -10.78 16 24 H 0.06 1.05 6.66 -51.93 -0.35 0.70 16 25 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.16 6.43 -51.93 -0.33 0.83 16 30 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 31 H 0.15 1.59 6.01 -52.49 -0.32 1.28 16 32 H 0.15 1.68 7.70 -52.49 -0.40 1.27 16 33 H 0.42 5.35 6.05 -40.82 -0.25 5.10 16 34 H 0.41 5.14 8.95 -40.82 -0.37 4.77 16 LS Contribution 283.12 15.07 4.27 4.27 Total: -1.00 -29.86 283.12 -6.84 -36.70 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -3.24 Total: 8.29 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -3.30 Total: -1.82 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.58 Total: -55.90 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -1.01 Total: -7.80 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.14 Total: 16.25 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.86 -6.84 -36.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094261113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.904 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds