Wall clock time and date at job start Mon Mar 30 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47616 * 2 1 4 4 C 1.50698 * 109.47101 * 120.00659 * 2 1 3 5 5 H 1.08003 * 120.00401 * 120.00206 * 4 2 1 6 6 C 1.37880 * 119.99867 * 299.99831 * 4 2 1 7 7 N 1.31511 * 119.99897 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46956 * 90.00297 * 8 6 4 10 10 H 1.48496 * 109.47192 * 210.00212 * 8 6 4 11 11 H 1.48498 * 109.47207 * 330.00475 * 8 6 4 12 12 N 1.46501 * 109.47032 * 240.00394 * 2 1 3 13 13 C 1.46501 * 119.99943 * 300.00046 * 12 2 1 14 14 C 1.38993 * 120.00138 * 120.00226 * 12 2 1 15 15 C 1.39002 * 119.65886 * 185.00024 * 14 12 2 16 16 C 1.38515 * 119.25899 * 179.97438 * 15 14 12 17 17 C 1.38553 * 118.58548 * 359.97438 * 16 15 14 18 18 N 1.48009 * 120.36314 * 179.97438 * 17 16 15 19 19 O 1.21795 * 120.00221 * 6.21260 * 18 17 16 20 20 O 1.21803 * 119.99520 * 186.21521 * 18 17 16 21 21 C 1.38955 * 119.26346 * 359.97438 * 17 16 15 22 22 N 1.39000 * 119.65841 * 179.97438 * 21 17 16 23 23 N 1.32471 * 119.65902 * 5.27152 * 14 12 2 24 24 H 1.09003 * 109.47364 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47241 * 299.99738 * 1 2 3 26 26 H 1.09000 * 109.47209 * 59.99379 * 1 2 3 27 27 H 0.96998 * 120.00251 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47225 * 270.00028 * 13 12 2 29 29 H 1.08999 * 109.47243 * 30.00237 * 13 12 2 30 30 H 1.09001 * 109.47235 * 149.99871 * 13 12 2 31 31 H 1.07998 * 120.37085 * 0.02562 * 15 14 12 32 32 H 1.07998 * 120.70688 * 179.97438 * 16 15 14 33 33 H 0.97001 * 119.99901 * 24.44903 * 22 21 17 34 34 H 0.96995 * 120.00502 * 204.44776 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 2.1379 -0.8593 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9950 3.9071 11 1 0.8491 2.1772 1.4924 12 7 2.0182 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.8174 -0.0150 -2.1111 15 6 3.1906 -0.6429 -3.2937 16 6 3.9866 0.0381 -4.1998 17 6 4.3845 1.3294 -3.8931 18 7 5.2359 2.0930 -4.8327 19 8 5.4972 1.6325 -5.9296 20 8 5.6752 3.1819 -4.5089 21 6 3.9754 1.8994 -2.6937 22 7 4.3703 3.1941 -2.3775 23 7 3.2199 1.2186 -1.8445 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.9040 -0.5279 4.4375 28 1 2.4156 -2.7377 -0.9719 29 1 0.6903 -2.3001 -0.9848 30 1 1.6236 -2.2851 -2.5003 31 1 2.8628 -1.6502 -3.5041 32 1 4.2907 -0.4274 -5.1257 33 1 4.6065 3.8153 -3.0841 34 1 4.4096 3.4764 -1.4504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094261113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:36 Heat of formation + Delta-G solvation = 40.069419 kcal Electronic energy + Delta-G solvation = -20310.079898 eV Core-core repulsion = 17053.458983 eV Total energy + Delta-G solvation = -3256.620915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.13831 -41.43877 -38.64940 -37.62097 -35.79492 -34.66842 -33.66160 -32.43361 -30.32069 -28.23209 -27.20705 -26.24325 -24.48834 -23.46410 -21.83221 -20.14181 -19.70992 -19.03524 -18.70707 -18.50036 -18.25187 -17.20547 -16.79077 -16.45323 -15.68972 -15.34575 -14.97880 -14.65045 -14.48603 -14.42175 -14.06136 -13.50421 -13.15424 -12.95069 -12.59485 -12.49795 -12.24546 -12.18460 -12.08285 -11.99813 -11.60113 -11.56971 -11.24217 -10.81400 -10.66408 -9.63631 -8.72289 -8.35408 -6.40539 -0.88004 0.26176 0.53010 0.61151 1.27254 1.35934 1.43907 1.82911 2.26604 2.45086 2.58720 3.00857 3.34653 3.69471 3.77428 4.01339 4.36261 4.44222 4.50129 4.59290 4.65783 4.67107 4.77894 4.91746 5.04317 5.09681 5.29462 5.49448 5.54802 5.77992 5.97836 6.12564 6.44628 6.48175 6.63605 6.76991 7.10336 7.25735 8.80672 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027498 B = 0.005575 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.997232 B = 5021.379603 C = 5597.248066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.236 3.764 3 H 0.054 0.946 4 C -0.525 4.525 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.941 5.941 8 Si 0.942 3.058 9 H -0.260 1.260 10 H -0.300 1.300 11 H -0.252 1.252 12 N -0.561 5.561 13 C 0.086 3.914 14 C 0.470 3.530 15 C -0.270 4.270 16 C 0.059 3.941 17 C -0.243 4.243 18 N 0.072 4.928 19 O -0.201 6.201 20 O -0.223 6.223 21 C 0.506 3.494 22 N -0.823 5.823 23 N -0.613 5.613 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.267 0.733 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.184 0.816 32 H 0.184 0.816 33 H 0.425 0.575 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 1.739 -14.351 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.563 4.563 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.581 5.581 8 Si 0.769 3.231 9 H -0.186 1.186 10 H -0.228 1.228 11 H -0.176 1.176 12 N -0.265 5.265 13 C -0.056 4.056 14 C 0.227 3.773 15 C -0.296 4.296 16 C 0.033 3.967 17 C -0.341 4.341 18 N 0.572 4.428 19 O -0.408 6.408 20 O -0.421 6.421 21 C 0.258 3.742 22 N -0.376 5.376 23 N -0.344 5.344 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.201 0.799 32 H 0.202 0.798 33 H 0.265 0.735 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.252 1.674 -12.887 13.189 hybrid contribution 0.334 0.785 0.159 0.868 sum -1.917 2.459 -12.728 13.105 Atomic orbital electron populations 1.22376 0.96834 1.02320 1.00063 1.19152 0.91454 0.94121 0.82043 0.92790 1.21351 1.31624 1.13081 0.90267 0.94042 1.25644 0.97122 0.99505 0.95305 1.70007 1.47161 1.42247 0.98669 0.85966 0.79509 0.80241 0.77347 1.18560 1.22818 1.17628 1.47162 1.46991 1.12068 1.20235 1.21992 1.01780 0.78581 1.03223 1.18755 0.84457 0.86768 0.87365 1.21521 1.09128 1.04930 0.94038 1.21172 0.88034 0.88454 0.99024 1.21349 1.16967 0.98453 0.97315 1.43276 0.98630 1.00104 1.00764 1.94457 1.64492 1.73002 1.08879 1.94255 1.56803 1.09373 1.81653 1.17676 0.84443 0.86738 0.85304 1.43002 1.71867 1.09215 1.13525 1.67061 1.21699 1.11080 1.34553 0.91242 0.93931 0.92335 0.92356 0.93104 0.89982 0.87417 0.79865 0.79836 0.73522 0.75552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.81 8.65 71.98 0.62 -5.19 16 2 C 0.24 9.97 2.26 44.24 0.10 10.07 16 3 H 0.05 2.50 5.87 -2.39 -0.01 2.48 16 4 C -0.52 -27.36 8.95 25.60 0.23 -27.13 16 5 H 0.04 2.41 7.89 -2.91 -0.02 2.39 16 6 C 0.02 1.25 5.45 84.66 0.46 1.71 16 7 N -0.94 -55.74 13.96 21.45 0.30 -55.44 16 8 Si 0.94 42.17 24.37 68.60 1.67 43.84 16 9 H -0.26 -10.83 6.87 99.48 0.68 -10.15 16 10 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.25 -10.71 6.53 99.48 0.65 -10.06 16 12 N -0.56 -19.47 2.87 -708.97 -2.03 -21.50 16 13 C 0.09 2.26 9.52 127.77 1.22 3.47 16 14 C 0.47 15.33 7.37 133.01 0.98 16.31 16 15 C -0.27 -6.49 9.27 22.52 0.21 -6.28 16 16 C 0.06 1.39 9.66 22.41 0.22 1.61 16 17 C -0.24 -7.13 6.88 36.62 0.25 -6.88 16 18 N 0.07 2.22 4.45 -45.88 -0.20 2.02 16 19 O -0.20 -6.20 18.53 18.89 0.35 -5.85 16 20 O -0.22 -6.92 15.89 18.88 0.30 -6.62 16 21 C 0.51 16.03 7.73 132.99 1.03 17.06 16 22 N -0.82 -22.10 8.54 -55.50 -0.47 -22.58 16 23 N -0.61 -21.91 8.88 -190.69 -1.69 -23.61 16 24 H 0.07 2.36 6.66 -2.39 -0.02 2.34 16 25 H 0.04 1.66 3.27 -2.39 -0.01 1.65 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 2.14 6.43 -2.39 -0.02 2.13 16 30 H 0.11 1.83 5.97 -2.39 -0.01 1.81 16 31 H 0.18 3.00 6.01 -2.91 -0.02 2.98 16 32 H 0.18 3.20 7.70 -2.91 -0.02 3.18 16 33 H 0.42 10.41 6.05 -92.71 -0.56 9.85 16 34 H 0.41 10.20 8.95 -92.71 -0.83 9.37 16 Total: -1.00 -65.81 283.12 3.24 -62.57 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.29 Total: 22.42 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.31 Total: 4.75 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -4.11 Total: -121.11 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.65 Total: -12.48 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.67 Total: 43.84 kcal Total: -65.81 3.24 -62.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094261113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.639 kcal (2) G-P(sol) polarization free energy of solvation -65.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds