Wall clock time and date at job start Mon Mar 30 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47342 * 2 1 4 4 C 1.50699 * 109.47344 * 240.00124 * 2 1 3 5 5 H 1.07998 * 120.00410 * 240.00096 * 4 2 1 6 6 C 1.37887 * 119.99970 * 59.99942 * 4 2 1 7 7 N 1.31512 * 120.00228 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99714 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47193 * 270.00136 * 8 6 4 10 10 H 1.48495 * 109.46943 * 30.00340 * 8 6 4 11 11 H 1.48500 * 109.46972 * 150.00176 * 8 6 4 12 12 N 1.46496 * 109.47381 * 120.00275 * 2 1 3 13 13 C 1.46504 * 120.00193 * 55.78153 * 12 2 1 14 14 C 1.38990 * 120.00294 * 235.78609 * 12 2 1 15 15 C 1.39008 * 119.65906 * 10.56500 * 14 12 2 16 16 C 1.38506 * 119.26125 * 179.97438 * 15 14 12 17 17 C 1.38555 * 118.58912 * 0.02562 * 16 15 14 18 18 N 1.48000 * 120.36964 * 179.97438 * 17 16 15 19 19 O 1.21806 * 120.00217 * 6.45200 * 18 17 16 20 20 O 1.21809 * 120.00282 * 186.45210 * 18 17 16 21 21 C 1.38962 * 119.26442 * 0.02562 * 17 16 15 22 22 N 1.38991 * 119.66300 * 180.02562 * 21 17 16 23 23 N 1.32467 * 119.66209 * 190.29546 * 14 12 2 24 24 H 1.09001 * 109.46995 * 59.99836 * 1 2 3 25 25 H 1.09009 * 109.46900 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47117 * 299.99590 * 1 2 3 27 27 H 0.96993 * 120.00239 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47296 * 89.99960 * 13 12 2 29 29 H 1.09002 * 109.47147 * 210.00609 * 13 12 2 30 30 H 1.09001 * 109.46573 * 330.00411 * 13 12 2 31 31 H 1.07994 * 120.36497 * 0.02562 * 15 14 12 32 32 H 1.07995 * 120.70563 * 180.02562 * 16 15 14 33 33 H 0.97000 * 119.99914 * 24.98134 * 22 21 17 34 34 H 0.97000 * 119.99841 * 204.97565 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 2.1372 -0.8594 -3.5566 8 14 0.6247 1.2791 -2.6541 9 1 -0.8029 0.8726 -2.6998 10 1 0.8470 2.1764 -1.4920 11 1 0.9758 1.9952 -3.9068 12 7 2.0184 -0.6906 1.1961 13 6 1.5899 -2.0635 1.4756 14 6 2.8881 -0.0435 2.0659 15 6 3.1179 1.3198 1.9210 16 6 3.9858 1.9565 2.7926 17 6 4.5983 1.2068 3.7838 18 7 5.5332 1.8468 4.7361 19 8 5.6784 3.0562 4.7273 20 8 6.1574 1.1643 5.5287 21 6 4.3260 -0.1529 3.8733 22 7 4.9355 -0.9128 4.8648 23 7 3.4855 -0.7311 3.0277 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9026 -0.5283 -4.4376 28 1 2.2848 -2.7627 1.0106 29 1 1.5759 -2.2275 2.5531 30 1 0.5902 -2.2215 1.0709 31 1 2.6244 1.8764 1.1380 32 1 4.1809 3.0147 2.7016 33 1 5.2394 -0.4889 5.6826 34 1 5.0568 -1.8669 4.7389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094261114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:40 Heat of formation + Delta-G solvation = 58.981071 kcal Electronic energy + Delta-G solvation = -20253.628799 eV Core-core repulsion = 16997.827955 eV Total energy + Delta-G solvation = -3255.800844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87797 -40.19662 -37.35795 -36.33431 -34.39205 -33.32519 -32.20411 -30.28181 -29.76658 -26.98951 -25.48593 -24.69315 -22.98393 -22.56677 -20.34320 -18.88156 -18.46438 -17.49558 -17.47525 -17.16011 -16.80681 -15.67076 -15.61334 -14.96200 -14.74902 -13.75288 -13.48298 -13.28997 -13.13701 -12.96271 -12.48403 -12.04754 -11.66333 -11.56502 -11.26133 -11.02897 -10.90937 -10.89132 -10.72909 -10.37710 -10.32430 -9.88615 -9.69729 -9.45338 -8.88315 -8.47469 -7.38939 -6.38089 -4.42598 0.37227 1.42289 1.77772 1.85943 3.02794 3.03353 3.11024 3.18351 3.61990 3.80349 4.09475 4.52176 4.87571 4.89825 4.98831 5.24528 5.58090 5.74544 5.81970 5.89734 5.95200 6.03771 6.08545 6.24839 6.29035 6.44239 6.68436 6.77377 6.98319 7.13852 7.25869 7.55656 7.67731 8.04398 8.13044 8.27048 8.64736 9.18737 10.74237 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028721 B = 0.005279 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.657543 B = 5302.936291 C = 5765.099733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.233 3.767 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.885 5.885 8 Si 0.883 3.117 9 H -0.274 1.274 10 H -0.265 1.265 11 H -0.291 1.291 12 N -0.547 5.547 13 C 0.098 3.902 14 C 0.488 3.512 15 C -0.270 4.270 16 C 0.047 3.953 17 C -0.234 4.234 18 N 0.073 4.927 19 O -0.196 6.196 20 O -0.218 6.218 21 C 0.517 3.483 22 N -0.835 5.835 23 N -0.593 5.593 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.269 0.731 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.420 0.580 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 1.606 11.895 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.131 3.869 3 H 0.075 0.925 4 C -0.577 4.577 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.521 5.521 8 Si 0.713 3.287 9 H -0.201 1.201 10 H -0.190 1.190 11 H -0.218 1.218 12 N -0.249 5.249 13 C -0.045 4.045 14 C 0.244 3.756 15 C -0.296 4.296 16 C 0.021 3.979 17 C -0.331 4.331 18 N 0.575 4.425 19 O -0.404 6.404 20 O -0.416 6.416 21 C 0.270 3.730 22 N -0.387 5.387 23 N -0.325 5.325 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.259 0.741 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.402 0.371 11.189 11.283 hybrid contribution -0.039 1.430 -0.011 1.431 sum -1.441 1.802 11.178 11.414 Atomic orbital electron populations 1.22526 0.98184 1.01931 0.99829 1.19626 0.90818 0.94209 0.82232 0.92524 1.21098 1.33598 1.14926 0.88032 0.90011 1.24878 0.95466 0.96640 0.95510 1.69849 1.44280 1.39831 0.98164 0.86932 0.80720 0.83362 0.77727 1.20096 1.19027 1.21764 1.47246 1.41960 1.14282 1.21428 1.21590 1.00337 0.82064 1.00534 1.18359 0.84433 0.88026 0.84765 1.21438 1.08045 0.94043 1.06116 1.20830 0.88620 1.00422 0.88039 1.21105 1.12576 0.94268 1.05166 1.43183 0.99131 1.00533 0.99685 1.94483 1.71730 0.97032 1.77151 1.94247 1.47759 1.62874 1.36762 1.17445 0.84767 0.84766 0.86003 1.42914 1.64457 1.11931 1.19411 1.67066 1.15945 1.37963 1.11481 0.92550 0.91901 0.94285 0.92033 0.92478 0.91587 0.90820 0.82835 0.82816 0.74113 0.76381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.57 37.16 0.32 -2.72 16 2 C 0.23 4.71 2.15 -69.09 -0.15 4.56 16 3 H 0.06 1.14 4.38 -51.93 -0.23 0.91 16 4 C -0.54 -13.38 9.02 -34.44 -0.31 -13.69 16 5 H 0.08 2.28 8.02 -52.49 -0.42 1.86 16 6 C 0.08 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -24.81 13.96 55.43 0.77 -24.03 16 8 Si 0.88 19.23 24.37 -169.99 -4.14 15.09 16 9 H -0.27 -5.79 6.87 56.52 0.39 -5.41 16 10 H -0.27 -5.34 6.53 56.52 0.37 -4.98 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.55 -10.00 2.87 -175.44 -0.50 -10.50 16 13 C 0.10 1.57 9.82 59.85 0.59 2.16 16 14 C 0.49 8.57 7.32 -155.02 -1.13 7.44 16 15 C -0.27 -4.37 9.31 -39.20 -0.36 -4.73 16 16 C 0.05 0.70 9.66 -39.37 -0.38 0.32 16 17 C -0.23 -3.73 6.88 -79.57 -0.55 -4.28 16 18 N 0.07 1.20 4.45 34.15 0.15 1.36 16 19 O -0.20 -3.34 18.53 -29.46 -0.55 -3.88 16 20 O -0.22 -3.48 15.90 -29.46 -0.47 -3.95 16 21 C 0.52 8.02 7.73 -155.01 -1.20 6.82 16 22 N -0.83 -10.26 8.52 31.11 0.27 -10.00 16 23 N -0.59 -9.88 9.28 -11.62 -0.11 -9.99 16 24 H 0.06 1.08 3.27 -51.93 -0.17 0.91 16 25 H 0.06 1.10 6.54 -51.92 -0.34 0.76 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.95 7.55 -51.93 -0.39 0.56 16 30 H 0.07 1.11 6.21 -51.93 -0.32 0.79 16 31 H 0.15 2.38 5.81 -52.49 -0.30 2.08 16 32 H 0.15 1.96 7.70 -52.49 -0.40 1.55 16 33 H 0.42 4.88 6.09 -40.82 -0.25 4.64 16 34 H 0.41 4.16 8.95 -40.82 -0.37 3.80 16 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -28.10 283.40 -6.80 -34.91 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.22 Total: 8.89 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.28 Total: -2.17 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.58 Total: -53.16 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -1.01 Total: -7.83 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.14 Total: 15.09 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.10 -6.80 -34.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094261114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.887 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds