Wall clock time and date at job start Mon Mar 30 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47342 * 2 1 4 4 C 1.50699 * 109.47344 * 240.00124 * 2 1 3 5 5 H 1.07998 * 120.00410 * 240.00096 * 4 2 1 6 6 C 1.37887 * 119.99970 * 59.99942 * 4 2 1 7 7 N 1.31512 * 120.00228 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99714 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47193 * 270.00136 * 8 6 4 10 10 H 1.48495 * 109.46943 * 30.00340 * 8 6 4 11 11 H 1.48500 * 109.46972 * 150.00176 * 8 6 4 12 12 N 1.46496 * 109.47381 * 120.00275 * 2 1 3 13 13 C 1.46504 * 120.00193 * 55.78153 * 12 2 1 14 14 C 1.38990 * 120.00294 * 235.78609 * 12 2 1 15 15 C 1.39008 * 119.65906 * 10.56500 * 14 12 2 16 16 C 1.38506 * 119.26125 * 179.97438 * 15 14 12 17 17 C 1.38555 * 118.58912 * 0.02562 * 16 15 14 18 18 N 1.48000 * 120.36964 * 179.97438 * 17 16 15 19 19 O 1.21806 * 120.00217 * 6.45200 * 18 17 16 20 20 O 1.21809 * 120.00282 * 186.45210 * 18 17 16 21 21 C 1.38962 * 119.26442 * 0.02562 * 17 16 15 22 22 N 1.38991 * 119.66300 * 180.02562 * 21 17 16 23 23 N 1.32467 * 119.66209 * 190.29546 * 14 12 2 24 24 H 1.09001 * 109.46995 * 59.99836 * 1 2 3 25 25 H 1.09009 * 109.46900 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47117 * 299.99590 * 1 2 3 27 27 H 0.96993 * 120.00239 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47296 * 89.99960 * 13 12 2 29 29 H 1.09002 * 109.47147 * 210.00609 * 13 12 2 30 30 H 1.09001 * 109.46573 * 330.00411 * 13 12 2 31 31 H 1.07994 * 120.36497 * 0.02562 * 15 14 12 32 32 H 1.07995 * 120.70563 * 180.02562 * 16 15 14 33 33 H 0.97000 * 119.99914 * 24.98134 * 22 21 17 34 34 H 0.97000 * 119.99841 * 204.97565 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 2.1372 -0.8594 -3.5566 8 14 0.6247 1.2791 -2.6541 9 1 -0.8029 0.8726 -2.6998 10 1 0.8470 2.1764 -1.4920 11 1 0.9758 1.9952 -3.9068 12 7 2.0184 -0.6906 1.1961 13 6 1.5899 -2.0635 1.4756 14 6 2.8881 -0.0435 2.0659 15 6 3.1179 1.3198 1.9210 16 6 3.9858 1.9565 2.7926 17 6 4.5983 1.2068 3.7838 18 7 5.5332 1.8468 4.7361 19 8 5.6784 3.0562 4.7273 20 8 6.1574 1.1643 5.5287 21 6 4.3260 -0.1529 3.8733 22 7 4.9355 -0.9128 4.8648 23 7 3.4855 -0.7311 3.0277 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9026 -0.5283 -4.4376 28 1 2.2848 -2.7627 1.0106 29 1 1.5759 -2.2275 2.5531 30 1 0.5902 -2.2215 1.0709 31 1 2.6244 1.8764 1.1380 32 1 4.1809 3.0147 2.7016 33 1 5.2394 -0.4889 5.6826 34 1 5.0568 -1.8669 4.7389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094261114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:39 Heat of formation + Delta-G solvation = 41.662618 kcal Electronic energy + Delta-G solvation = -20254.379784 eV Core-core repulsion = 16997.827955 eV Total energy + Delta-G solvation = -3256.551829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.15550 -41.47333 -38.73924 -37.62681 -35.67998 -34.86133 -33.73632 -31.79175 -30.99555 -28.28478 -27.20405 -26.07914 -24.26156 -23.88383 -21.81989 -20.17997 -19.74167 -18.91971 -18.75879 -18.69186 -18.17204 -17.08516 -16.91343 -16.41889 -16.11352 -15.14621 -14.97746 -14.54718 -14.44649 -14.41042 -14.04110 -13.62038 -13.14434 -13.01158 -12.57197 -12.44866 -12.28135 -12.18972 -12.17670 -11.87579 -11.61908 -11.50259 -11.30366 -10.86699 -10.77386 -9.67632 -8.74802 -8.34685 -6.43380 -0.90625 0.20800 0.49271 0.58573 1.33714 1.38611 1.48797 1.74208 2.28387 2.43748 2.53742 2.99660 3.31137 3.66031 3.73509 4.00261 4.30080 4.40328 4.51326 4.60736 4.61258 4.65898 4.73650 4.90891 4.98085 5.06738 5.28902 5.42915 5.50644 5.68631 6.03822 6.09819 6.39185 6.47451 6.62819 6.75583 7.02548 7.23239 8.81583 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028721 B = 0.005279 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.657543 B = 5302.936291 C = 5765.099733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.236 3.764 3 H 0.066 0.934 4 C -0.535 4.535 5 H 0.034 0.966 6 C 0.022 3.978 7 N -0.942 5.942 8 Si 0.943 3.057 9 H -0.261 1.261 10 H -0.233 1.233 11 H -0.301 1.301 12 N -0.559 5.559 13 C 0.101 3.899 14 C 0.476 3.524 15 C -0.278 4.278 16 C 0.057 3.943 17 C -0.241 4.241 18 N 0.072 4.928 19 O -0.213 6.213 20 O -0.208 6.208 21 C 0.511 3.489 22 N -0.818 5.818 23 N -0.600 5.600 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.269 0.731 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.425 0.575 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 3.062 13.666 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.083 0.917 4 C -0.573 4.573 5 H 0.052 0.948 6 C -0.177 4.177 7 N -0.581 5.581 8 Si 0.769 3.231 9 H -0.186 1.186 10 H -0.156 1.156 11 H -0.229 1.229 12 N -0.263 5.263 13 C -0.041 4.041 14 C 0.233 3.767 15 C -0.304 4.304 16 C 0.031 3.969 17 C -0.339 4.339 18 N 0.573 4.427 19 O -0.417 6.417 20 O -0.409 6.409 21 C 0.263 3.737 22 N -0.371 5.371 23 N -0.331 5.331 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.179 0.821 32 H 0.195 0.805 33 H 0.265 0.735 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.273 1.849 13.030 13.355 hybrid contribution 0.396 0.848 -0.432 1.031 sum -1.877 2.697 12.598 13.019 Atomic orbital electron populations 1.22421 0.96077 1.02570 1.00958 1.19426 0.92305 0.93894 0.80984 0.91686 1.21326 1.32213 1.13420 0.90363 0.94796 1.25763 0.96992 0.99992 0.94979 1.70021 1.46868 1.42335 0.98855 0.85951 0.79224 0.79697 0.78227 1.18642 1.15577 1.22930 1.47125 1.42932 1.14893 1.21339 1.21604 1.00106 0.80960 1.01449 1.18584 0.84391 0.88720 0.85033 1.21519 1.08655 0.93580 1.06691 1.21077 0.87391 1.01441 0.86941 1.21296 1.12620 0.94643 1.05358 1.43248 0.99208 1.00505 0.99775 1.94487 1.72333 0.97225 1.77642 1.94237 1.47434 1.62775 1.36495 1.17611 0.84797 0.85031 0.86276 1.42897 1.63046 1.12475 1.18667 1.67063 1.16255 1.38138 1.11689 0.93143 0.91739 0.91159 0.92214 0.94464 0.89849 0.90039 0.82087 0.80544 0.73517 0.75094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 8.57 71.98 0.62 -4.83 16 2 C 0.24 9.20 2.15 44.24 0.10 9.30 16 3 H 0.07 2.45 4.38 -2.39 -0.01 2.44 16 4 C -0.53 -26.98 9.02 25.60 0.23 -26.75 16 5 H 0.03 1.98 8.02 -2.91 -0.02 1.96 16 6 C 0.02 1.14 5.45 84.66 0.46 1.60 16 7 N -0.94 -54.62 13.96 21.45 0.30 -54.32 16 8 Si 0.94 38.65 24.37 68.60 1.67 40.33 16 9 H -0.26 -10.06 6.87 99.48 0.68 -9.38 16 10 H -0.23 -8.24 6.53 99.48 0.65 -7.59 16 11 H -0.30 -12.80 7.11 99.48 0.71 -12.10 16 12 N -0.56 -19.80 2.87 -708.96 -2.03 -21.84 16 13 C 0.10 3.20 9.82 127.77 1.25 4.45 16 14 C 0.48 15.94 7.32 133.02 0.97 16.92 16 15 C -0.28 -8.36 9.31 22.52 0.21 -8.15 16 16 C 0.06 1.57 9.66 22.41 0.22 1.79 16 17 C -0.24 -7.18 6.88 36.63 0.25 -6.93 16 18 N 0.07 2.23 4.45 -45.88 -0.20 2.02 16 19 O -0.21 -6.86 18.53 18.88 0.35 -6.51 16 20 O -0.21 -6.15 15.90 18.87 0.30 -5.85 16 21 C 0.51 14.80 7.73 132.99 1.03 15.83 16 22 N -0.82 -18.29 8.52 -55.49 -0.47 -18.77 16 23 N -0.60 -19.01 9.28 -190.68 -1.77 -20.78 16 24 H 0.05 1.76 3.27 -2.39 -0.01 1.75 16 25 H 0.06 2.12 6.54 -2.38 -0.02 2.10 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 2.30 7.55 -2.39 -0.02 2.28 16 30 H 0.08 2.39 6.21 -2.39 -0.01 2.38 16 31 H 0.16 4.54 5.81 -2.91 -0.02 4.53 16 32 H 0.18 3.96 7.70 -2.91 -0.02 3.94 16 33 H 0.42 8.86 6.09 -92.71 -0.56 8.29 16 34 H 0.42 7.65 8.95 -92.71 -0.83 6.82 16 Total: -1.00 -61.21 283.40 3.19 -58.03 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.29 Total: 24.47 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.34 Total: 3.22 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -4.18 Total: -113.68 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.65 Total: -12.36 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.67 Total: 40.33 kcal Total: -61.21 3.19 -58.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094261114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.691 kcal (2) G-P(sol) polarization free energy of solvation -61.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds