Wall clock time and date at job start Mon Mar 30 2020 04:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45203 * 109.46920 * 2 1 4 4 C 1.34892 * 116.99465 * 179.97438 * 3 2 1 5 5 O 1.21616 * 120.00403 * 0.02562 * 4 3 2 6 6 C 1.46497 * 119.99506 * 180.02562 * 4 3 2 7 7 C 1.37998 * 126.26085 * 180.26556 * 6 4 3 8 8 C 1.39795 * 106.96640 * 180.16266 * 7 6 4 9 9 C 1.35491 * 107.84403 * 359.61134 * 8 7 6 10 10 N 1.34957 * 108.98065 * 0.23956 * 9 8 7 11 11 C 1.46505 * 125.63152 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47187 * 265.02888 * 11 10 9 13 13 O 1.21291 * 119.99735 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99976 * 179.97438 * 12 11 10 15 15 C 1.37093 * 120.00035 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99911 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00258 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00398 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46926 * 59.99795 * 19 17 15 21 21 H 1.48493 * 109.47097 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46881 * 300.00262 * 19 17 15 23 23 H 1.08997 * 109.46761 * 60.00157 * 1 2 3 24 24 H 1.08999 * 109.46899 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47482 * 299.99963 * 1 2 3 26 26 H 1.09001 * 109.46864 * 240.00066 * 2 1 3 27 27 H 1.08997 * 109.46761 * 119.99843 * 2 1 3 28 28 H 1.08003 * 126.51504 * 0.04485 * 7 6 4 29 29 H 1.08002 * 126.08084 * 179.87990 * 8 7 6 30 30 H 1.08001 * 125.50711 * 180.22571 * 9 8 7 31 31 H 1.09004 * 109.47345 * 25.02862 * 11 10 9 32 32 H 1.08997 * 109.47113 * 145.02788 * 11 10 9 33 33 H 0.97003 * 119.99802 * 359.97438 * 14 12 11 34 34 H 0.96999 * 120.00258 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5457 0.0005 5 8 4.0922 0.5812 0.0005 6 6 3.9112 2.8994 0.0011 7 6 5.2514 3.2284 -0.0034 8 6 5.3289 4.6242 0.0029 9 6 4.0641 5.1102 0.0024 10 7 3.1966 4.0764 0.0012 11 6 1.7358 4.1880 0.0008 12 6 1.2250 4.1023 1.4161 13 8 2.0046 3.9623 2.3347 14 7 -0.0979 4.1823 1.6611 15 6 -0.5625 4.1039 2.9485 16 1 0.1315 3.9784 3.7664 17 6 -1.9264 4.1858 3.2010 18 7 -2.7710 4.3380 2.2058 19 14 -2.5596 4.0796 4.9553 20 1 -1.9788 5.1852 5.7589 21 1 -4.0402 4.1921 4.9548 22 1 -2.1628 2.7765 5.5467 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 6.0824 2.5386 -0.0088 29 1 6.2356 5.2109 0.0034 30 1 3.7939 6.1559 0.0029 31 1 1.4446 5.1445 -0.4333 32 1 1.3096 3.3765 -0.5890 33 1 -0.7212 4.2954 0.9265 34 1 -3.7231 4.3956 2.3821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098057016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:51 Heat of formation + Delta-G solvation = -73.824935 kcal Electronic energy + Delta-G solvation = -20454.051027 eV Core-core repulsion = 17160.198531 eV Total energy + Delta-G solvation = -3293.852496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24401 -39.57989 -38.10141 -36.26431 -34.13091 -32.56347 -31.54138 -31.30491 -29.19449 -27.29335 -24.57528 -23.96922 -22.09913 -20.43497 -20.10029 -19.30212 -18.21557 -17.33167 -16.66677 -16.53791 -16.08585 -15.13278 -14.73731 -14.37426 -14.08754 -13.99969 -13.36260 -13.18475 -13.10544 -12.73889 -12.40623 -12.27902 -12.07546 -11.69855 -11.66957 -11.63315 -11.29704 -11.08521 -10.52663 -10.40048 -10.33181 -10.30810 -9.63380 -8.98661 -8.23435 -8.11371 -8.00884 -6.53810 -3.95141 1.54192 2.82196 2.93206 3.11291 3.12168 3.19267 3.24434 3.48888 3.69453 4.08587 4.77238 4.94395 5.00354 5.12270 5.16504 5.25566 5.30351 5.42763 5.53543 5.59028 5.74568 5.87445 5.99250 6.05401 6.24148 6.30606 6.37606 6.67128 6.97387 7.22322 7.42412 7.43920 7.90122 8.05667 8.44597 9.03894 9.36046 9.86213 10.63010 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.006435 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.817099 B = 4349.976029 C = 5249.925848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.067 3.933 3 O -0.352 6.352 4 C 0.544 3.456 5 O -0.515 6.515 6 C -0.037 4.037 7 C -0.104 4.104 8 C -0.220 4.220 9 C 0.042 3.958 10 N -0.385 5.385 11 C 0.083 3.917 12 C 0.428 3.572 13 O -0.578 6.578 14 N -0.551 5.551 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.027 3.973 18 N -0.897 5.897 19 Si 0.930 3.070 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.393 0.607 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 -1.668 -8.280 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.006 4.006 3 O -0.269 6.269 4 C 0.390 3.610 5 O -0.404 6.404 6 C -0.147 4.147 7 C -0.130 4.130 8 C -0.244 4.244 9 C -0.096 4.096 10 N -0.057 5.057 11 C -0.043 4.043 12 C 0.212 3.788 13 O -0.462 6.462 14 N -0.187 5.187 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.175 4.175 18 N -0.538 5.538 19 Si 0.757 3.243 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.185 0.815 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.227 0.773 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.857 -2.096 -7.657 9.865 hybrid contribution -0.871 -0.060 0.513 1.013 sum 4.986 -2.157 -7.143 8.974 Atomic orbital electron populations 1.21814 0.92291 1.02699 1.04308 1.22996 0.95579 0.79933 1.02117 1.86666 1.23598 1.32435 1.84189 1.19791 0.80588 0.88138 0.72435 1.90834 1.60550 1.41156 1.47902 1.19282 0.91323 0.83255 1.20857 1.21186 0.93058 0.95761 1.03024 1.20729 0.96473 0.94027 1.13134 1.21896 0.89305 0.93105 1.05245 1.43502 1.05866 1.05290 1.51014 1.21903 0.77462 1.05280 0.99625 1.19738 0.83899 0.85900 0.89226 1.90599 1.55561 1.55078 1.44991 1.41731 1.04678 1.62800 1.09498 1.19644 0.91547 1.47317 0.84514 0.87945 1.25258 0.95672 0.96916 0.99701 1.69594 1.03528 1.49195 1.31488 0.85919 0.77403 0.79207 0.81755 1.19802 1.20828 1.19823 0.91622 0.90502 0.90528 0.91577 0.91333 0.83616 0.83893 0.81511 0.87423 0.86667 0.77319 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.29 37.16 0.38 -1.67 16 2 C 0.07 1.01 6.20 37.16 0.23 1.24 16 3 O -0.35 -6.40 7.68 -41.02 -0.32 -6.71 16 4 C 0.54 10.49 7.92 34.06 0.27 10.76 16 5 O -0.51 -10.41 16.68 -19.35 -0.32 -10.74 16 6 C -0.04 -0.68 6.88 -82.00 -0.56 -1.25 16 7 C -0.10 -1.71 10.66 -39.09 -0.42 -2.12 16 8 C -0.22 -3.17 10.81 -39.98 -0.43 -3.60 16 9 C 0.04 0.64 11.33 -17.16 -0.19 0.44 16 10 N -0.38 -6.72 2.24 -114.31 -0.26 -6.98 16 11 C 0.08 1.42 5.88 -5.19 -0.03 1.38 16 12 C 0.43 9.75 7.75 -10.98 -0.09 9.66 16 13 O -0.58 -15.67 16.00 5.55 0.09 -15.58 16 14 N -0.55 -13.22 5.29 -10.96 -0.06 -13.28 16 15 C -0.30 -8.07 9.68 -14.94 -0.14 -8.21 16 16 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 18 N -0.90 -23.19 13.05 55.50 0.72 -22.47 16 19 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.15 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.11 1.46 8.12 -51.93 -0.42 1.04 16 32 H 0.12 1.84 6.46 -51.93 -0.34 1.51 16 33 H 0.39 8.88 7.90 -40.82 -0.32 8.55 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -32.54 307.54 -5.58 -38.12 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -3.97 Total: 10.37 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.08 Total: 7.23 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.41 Total: -42.72 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.55 Total: -33.03 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.54 -5.58 -38.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098057016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.704 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds