Wall clock time and date at job start Mon Mar 30 2020 04:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45203 * 109.46920 * 2 1 4 4 C 1.34892 * 116.99465 * 179.97438 * 3 2 1 5 5 O 1.21616 * 120.00403 * 0.02562 * 4 3 2 6 6 C 1.46497 * 119.99506 * 180.02562 * 4 3 2 7 7 C 1.37998 * 126.26085 * 180.26556 * 6 4 3 8 8 C 1.39795 * 106.96640 * 180.16266 * 7 6 4 9 9 C 1.35491 * 107.84403 * 359.61134 * 8 7 6 10 10 N 1.34957 * 108.98065 * 0.23956 * 9 8 7 11 11 C 1.46505 * 125.63152 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47187 * 265.02888 * 11 10 9 13 13 O 1.21291 * 119.99735 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99976 * 179.97438 * 12 11 10 15 15 C 1.37093 * 120.00035 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99911 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00258 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00398 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46926 * 59.99795 * 19 17 15 21 21 H 1.48493 * 109.47097 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46881 * 300.00262 * 19 17 15 23 23 H 1.08997 * 109.46761 * 60.00157 * 1 2 3 24 24 H 1.08999 * 109.46899 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47482 * 299.99963 * 1 2 3 26 26 H 1.09001 * 109.46864 * 240.00066 * 2 1 3 27 27 H 1.08997 * 109.46761 * 119.99843 * 2 1 3 28 28 H 1.08003 * 126.51504 * 0.04485 * 7 6 4 29 29 H 1.08002 * 126.08084 * 179.87990 * 8 7 6 30 30 H 1.08001 * 125.50711 * 180.22571 * 9 8 7 31 31 H 1.09004 * 109.47345 * 25.02862 * 11 10 9 32 32 H 1.08997 * 109.47113 * 145.02788 * 11 10 9 33 33 H 0.97003 * 119.99802 * 359.97438 * 14 12 11 34 34 H 0.96999 * 120.00258 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5457 0.0005 5 8 4.0922 0.5812 0.0005 6 6 3.9112 2.8994 0.0011 7 6 5.2514 3.2284 -0.0034 8 6 5.3289 4.6242 0.0029 9 6 4.0641 5.1102 0.0024 10 7 3.1966 4.0764 0.0012 11 6 1.7358 4.1880 0.0008 12 6 1.2250 4.1023 1.4161 13 8 2.0046 3.9623 2.3347 14 7 -0.0979 4.1823 1.6611 15 6 -0.5625 4.1039 2.9485 16 1 0.1315 3.9784 3.7664 17 6 -1.9264 4.1858 3.2010 18 7 -2.7710 4.3380 2.2058 19 14 -2.5596 4.0796 4.9553 20 1 -1.9788 5.1852 5.7589 21 1 -4.0402 4.1921 4.9548 22 1 -2.1628 2.7765 5.5467 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 6.0824 2.5386 -0.0088 29 1 6.2356 5.2109 0.0034 30 1 3.7939 6.1559 0.0029 31 1 1.4446 5.1445 -0.4333 32 1 1.3096 3.3765 -0.5890 33 1 -0.7212 4.2954 0.9265 34 1 -3.7231 4.3956 2.3821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098057016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:50 Heat of formation + Delta-G solvation = -94.444077 kcal Electronic energy + Delta-G solvation = -20454.945140 eV Core-core repulsion = 17160.198531 eV Total energy + Delta-G solvation = -3294.746609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.53490 -40.96878 -39.91513 -37.67628 -36.06767 -33.98108 -33.23682 -32.72730 -30.43880 -28.82033 -26.39752 -25.23347 -23.35409 -21.85141 -21.53455 -20.77071 -20.07717 -18.76714 -18.16741 -18.04482 -17.55289 -16.63011 -16.39773 -15.96187 -15.76625 -15.47549 -14.84852 -14.60906 -14.47168 -13.90823 -13.84302 -13.58670 -13.52284 -13.24313 -13.08004 -12.98309 -12.84459 -12.48936 -12.47303 -12.15439 -11.83400 -11.59586 -11.56432 -10.70194 -10.07060 -9.68321 -9.25449 -8.50315 -5.99110 0.18004 1.35854 1.40233 1.48416 1.54818 1.67318 1.88689 1.93526 2.16694 2.28416 3.12068 3.16245 3.62516 3.90430 3.94919 3.99855 4.14281 4.24900 4.26882 4.30841 4.44291 4.54234 4.77527 4.86007 5.04301 5.11916 5.24251 5.37241 5.37724 5.77131 5.88133 5.96772 6.25607 6.52953 6.65415 7.07003 7.45772 8.00945 8.65754 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.006435 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.817099 B = 4349.976029 C = 5249.925848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 O -0.363 6.363 4 C 0.537 3.463 5 O -0.538 6.538 6 C -0.080 4.080 7 C -0.105 4.105 8 C -0.216 4.216 9 C 0.044 3.956 10 N -0.396 5.396 11 C 0.094 3.906 12 C 0.430 3.570 13 O -0.625 6.625 14 N -0.556 5.556 15 C -0.334 4.334 16 H 0.074 0.926 17 C -0.002 4.002 18 N -0.911 5.911 19 Si 0.986 3.014 20 H -0.273 1.273 21 H -0.267 1.267 22 H -0.276 1.276 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.156 0.844 29 H 0.178 0.822 30 H 0.202 0.798 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.400 0.600 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 -0.707 -9.114 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.386 3.614 5 O -0.430 6.430 6 C -0.189 4.189 7 C -0.132 4.132 8 C -0.238 4.238 9 C -0.093 4.093 10 N -0.069 5.069 11 C -0.031 4.031 12 C 0.216 3.784 13 O -0.512 6.512 14 N -0.192 5.192 15 C -0.463 4.463 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.551 5.551 19 Si 0.810 3.190 20 H -0.198 1.198 21 H -0.192 1.192 22 H -0.201 1.201 23 H 0.094 0.906 24 H 0.126 0.874 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.173 0.827 29 H 0.196 0.804 30 H 0.219 0.781 31 H 0.169 0.831 32 H 0.144 0.856 33 H 0.234 0.766 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.716 -1.128 -8.523 10.324 hybrid contribution -0.764 -0.343 0.752 1.126 sum 4.952 -1.471 -7.771 9.331 Atomic orbital electron populations 1.21798 0.90906 1.04374 1.03077 1.23260 0.96599 0.78899 1.02603 1.86656 1.23254 1.34111 1.84001 1.20087 0.80753 0.88575 0.72024 1.90795 1.60929 1.41872 1.49375 1.19525 0.92437 0.83406 1.23555 1.21566 0.92644 0.97234 1.01738 1.21182 0.97699 0.93221 1.11737 1.22662 0.89255 0.94186 1.03205 1.43607 1.05903 1.05567 1.51850 1.21848 0.77728 1.08026 0.95477 1.20669 0.82977 0.83507 0.91221 1.90565 1.56617 1.56640 1.47425 1.41726 1.05471 1.63223 1.08804 1.19527 0.91888 1.49669 0.85232 0.90754 1.25913 0.95283 0.95982 1.03164 1.69636 1.03892 1.48784 1.32770 0.85094 0.77518 0.78808 0.77590 1.19779 1.19175 1.20106 0.90645 0.87413 0.93737 0.89601 0.92346 0.82675 0.80438 0.78112 0.83134 0.85626 0.76583 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 10.29 71.98 0.74 -3.05 16 2 C 0.06 1.80 6.20 71.98 0.45 2.24 16 3 O -0.36 -13.39 7.68 -58.06 -0.45 -13.84 16 4 C 0.54 21.05 7.92 69.97 0.55 21.60 16 5 O -0.54 -22.22 16.68 19.46 0.32 -21.89 16 6 C -0.08 -2.94 6.88 40.32 0.28 -2.67 16 7 C -0.11 -3.32 10.66 22.59 0.24 -3.08 16 8 C -0.22 -5.60 10.81 22.01 0.24 -5.37 16 9 C 0.04 1.20 11.33 83.58 0.95 2.15 16 10 N -0.40 -13.25 2.24 -515.58 -1.15 -14.40 16 11 C 0.09 3.09 5.88 85.63 0.50 3.59 16 12 C 0.43 19.62 7.75 87.66 0.68 20.30 16 13 O -0.63 -34.56 16.00 -3.07 -0.05 -34.61 16 14 N -0.56 -26.90 5.29 -306.99 -1.62 -28.53 16 15 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 16 H 0.07 4.43 7.16 -2.91 -0.02 4.40 16 17 C 0.00 -0.12 5.50 84.93 0.47 0.35 16 18 N -0.91 -46.46 13.05 21.66 0.28 -46.17 16 19 Si 0.99 41.59 29.55 68.60 2.03 43.62 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.20 3.91 8.06 -2.91 -0.02 3.88 16 31 H 0.15 3.61 8.12 -2.39 -0.02 3.59 16 32 H 0.13 3.88 6.46 -2.39 -0.02 3.86 16 33 H 0.40 18.00 7.90 -92.71 -0.73 17.27 16 34 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -71.74 307.54 5.67 -66.07 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.39 Total: 31.14 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 5.91 Total: 18.62 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.49 Total: -89.10 kcal Atomic # 8 Polarization: -70.17 SS G_CDS: -0.17 Total: -70.34 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -71.74 5.67 -66.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098057016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.374 kcal (2) G-P(sol) polarization free energy of solvation -71.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds