Wall clock time and date at job start Mon Mar 30 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99583 * 2 1 4 4 H 1.09003 * 109.52523 * 324.92041 * 3 2 1 5 5 C 1.53038 * 109.49537 * 204.84030 * 3 2 1 6 6 C 1.53049 * 109.53649 * 178.68769 * 5 3 2 7 7 H 1.08997 * 109.49623 * 301.38092 * 6 5 3 8 8 C 1.50704 * 109.49648 * 181.31441 * 6 5 3 9 9 C 1.33384 * 125.20108 * 119.99693 * 8 6 5 10 10 C 1.38422 * 114.91995 * 179.97438 * 9 8 6 11 11 C 1.33392 * 114.92118 * 0.02562 * 10 9 8 12 12 S 1.75883 * 109.59274 * 359.75517 * 11 10 9 13 13 C 1.52756 * 109.38320 * 61.23871 * 6 5 3 14 14 N 1.46934 * 109.00904 * 305.58844 * 13 6 5 15 15 C 1.36939 * 120.62823 * 233.58917 * 14 13 6 16 16 H 1.07996 * 119.99905 * 151.65649 * 15 14 13 17 17 C 1.38808 * 119.99773 * 331.92590 * 15 14 13 18 18 N 1.31616 * 120.00492 * 342.81736 * 17 15 14 19 19 Si 1.86802 * 119.99784 * 162.81823 * 17 15 14 20 20 H 1.48503 * 109.47256 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47450 * 119.99847 * 19 17 15 22 22 H 1.48501 * 109.47146 * 240.00062 * 19 17 15 23 23 C 1.46919 * 118.73899 * 53.30916 * 14 13 6 24 24 H 1.08998 * 109.47381 * 299.99418 * 1 2 3 25 25 H 1.08999 * 109.47169 * 60.00271 * 1 2 3 26 26 H 1.09001 * 109.46608 * 179.97438 * 1 2 3 27 27 H 1.00890 * 111.00025 * 123.95463 * 2 1 3 28 28 H 1.09004 * 109.46085 * 298.70106 * 5 3 2 29 29 H 1.08998 * 109.46257 * 58.66419 * 5 3 2 30 30 H 1.08003 * 122.53819 * 359.95842 * 9 8 6 31 31 H 1.08003 * 122.54018 * 180.02562 * 10 9 8 32 32 H 1.08001 * 125.20281 * 180.02562 * 11 10 9 33 33 H 1.09004 * 109.50850 * 185.70817 * 13 6 5 34 34 H 1.09002 * 109.43448 * 65.42131 * 13 6 5 35 35 H 0.97004 * 119.99884 * 179.97438 * 18 17 15 36 36 H 1.09007 * 109.58399 * 66.43233 * 23 14 13 37 37 H 1.08996 * 109.59196 * 186.85628 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3410 2.0128 -0.5904 5 6 3.4007 1.3792 -0.6060 6 6 3.9370 2.8123 -0.6365 7 1 3.2646 3.4400 -1.2214 8 6 5.3076 2.8232 -1.2630 9 6 5.6444 3.4964 -2.3641 10 6 6.9654 3.3553 -2.7528 11 6 7.7013 2.5671 -1.9675 12 16 6.7094 1.9555 -0.6501 13 6 4.0222 3.3522 0.7899 14 7 2.7088 3.2126 1.4337 15 6 2.0976 4.2924 2.0131 16 1 1.0200 4.3372 2.0689 17 6 2.8628 5.3318 2.5236 18 7 4.1440 5.1496 2.7638 19 14 2.0744 6.9896 2.8696 20 1 0.6331 6.9357 2.5159 21 1 2.2189 7.3153 4.3112 22 1 2.7443 8.0358 2.0561 23 6 2.0611 1.8939 1.4386 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8306 -0.5261 0.7813 28 1 4.0605 0.7574 -0.0010 29 1 3.3605 0.9848 -1.6214 30 1 4.9397 4.1051 -2.9112 31 1 7.3697 3.8462 -3.6257 32 1 8.7473 2.3427 -2.1154 33 1 4.3068 4.4042 0.7646 34 1 4.7654 2.7838 1.3490 35 1 4.6788 5.8762 3.1202 36 1 2.6412 1.2041 2.0517 37 1 1.0522 1.9838 1.8411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:10 Heat of formation + Delta-G solvation = 52.214888 kcal Electronic energy + Delta-G solvation = -18491.747096 eV Core-core repulsion = 15781.946062 eV Total energy + Delta-G solvation = -2709.801034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.57145 -37.14726 -34.90425 -33.08220 -31.01891 -29.21883 -27.59975 -25.33519 -24.47117 -23.63398 -21.78313 -21.12553 -19.58001 -18.74867 -16.76507 -16.45524 -15.39601 -14.99061 -14.91664 -14.15753 -13.85564 -13.77259 -13.34367 -12.92273 -12.75284 -12.49169 -12.38708 -12.01565 -11.88212 -11.69013 -11.34757 -11.06330 -10.84750 -10.71457 -10.58811 -10.28637 -10.08170 -10.00463 -9.79580 -9.73457 -8.60416 -8.22922 -8.09030 -8.03938 -6.71352 -5.84141 -3.28337 1.42796 2.06377 2.45678 3.13617 3.33943 3.42000 3.43814 4.38530 4.56340 5.16340 5.32397 5.37035 5.45036 5.53090 5.63110 5.63519 5.73379 5.88681 5.90928 5.97243 6.02674 6.06150 6.24597 6.31255 6.44738 6.54923 6.63034 6.70817 6.74895 6.76402 6.94057 7.25754 7.38682 7.59132 7.66812 7.74756 8.37875 9.13603 9.76531 10.32895 11.23430 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.008403 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.479695 B = 3331.293125 C = 4984.545374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.691 5.691 3 C 0.067 3.933 4 H 0.075 0.925 5 C -0.086 4.086 6 C -0.050 4.050 7 H 0.081 0.919 8 C -0.128 4.128 9 C -0.164 4.164 10 C -0.128 4.128 11 C -0.240 4.240 12 S 0.103 5.897 13 C 0.182 3.818 14 N -0.586 5.586 15 C -0.258 4.258 16 H 0.066 0.934 17 C 0.006 3.994 18 N -0.897 5.897 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.122 3.878 24 H 0.023 0.977 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.337 0.663 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.022 0.978 35 H 0.255 0.745 36 H 0.018 0.982 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -7.242 -8.407 11.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.321 5.321 3 C -0.044 4.044 4 H 0.093 0.907 5 C -0.125 4.125 6 C -0.073 4.073 7 H 0.099 0.901 8 C -0.247 4.247 9 C -0.194 4.194 10 C -0.160 4.160 11 C -0.375 4.375 12 S 0.366 5.634 13 C 0.055 3.945 14 N -0.308 5.308 15 C -0.388 4.388 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.540 5.540 19 Si 0.731 3.269 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.214 1.214 23 C -0.006 4.006 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.173 0.827 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.067 -8.139 -7.767 11.438 hybrid contribution -0.653 2.176 -0.098 2.274 sum 1.414 -5.963 -7.866 9.971 Atomic orbital electron populations 1.22159 0.88494 1.00947 1.00435 1.60602 1.07273 1.14740 1.49457 1.22164 0.95897 0.87933 0.98376 0.90714 1.21421 0.95530 0.95262 1.00259 1.20586 0.88807 0.97337 1.00592 0.90080 1.24676 0.99353 1.01790 0.98838 1.20068 0.96693 1.04043 0.98547 1.20059 0.93859 1.00788 1.01260 1.25527 1.03614 1.07375 1.01010 1.84280 1.01685 1.49467 1.27919 1.20797 0.86640 1.01683 0.85348 1.43940 1.19574 1.03689 1.63577 1.19186 0.90770 0.96396 1.32420 0.91653 1.25058 0.96129 0.99801 0.98332 1.70037 1.06234 1.31366 1.46396 0.86248 0.78818 0.84276 0.77580 1.20220 1.21622 1.21425 1.21608 0.96824 0.88764 0.93430 0.95849 0.92100 0.92140 0.84553 0.92560 0.92468 0.84808 0.85092 0.82652 0.89113 0.95955 0.93513 0.96391 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.50 60.07 0.63 1.01 16 2 N -0.69 -10.30 6.61 -113.87 -0.75 -11.05 16 3 C 0.07 1.18 2.62 -67.59 -0.18 1.01 16 4 H 0.07 1.39 7.80 -51.93 -0.41 0.98 16 5 C -0.09 -1.51 4.70 -26.69 -0.13 -1.64 16 6 C -0.05 -0.97 2.70 -91.87 -0.25 -1.22 16 7 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 8 C -0.13 -2.27 5.10 -36.00 -0.18 -2.45 16 9 C -0.16 -2.64 10.01 -41.21 -0.41 -3.06 16 10 C -0.13 -1.84 10.18 -41.21 -0.42 -2.26 16 11 C -0.24 -3.39 11.23 29.04 0.33 -3.06 16 12 S 0.10 1.68 22.80 -107.50 -2.45 -0.78 16 13 C 0.18 4.29 4.53 -3.93 -0.02 4.27 16 14 N -0.59 -14.45 3.00 -172.58 -0.52 -14.97 16 15 C -0.26 -7.00 9.58 -15.06 -0.14 -7.14 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 17 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 18 N -0.90 -25.82 11.21 55.49 0.62 -25.20 16 19 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.12 2.52 5.77 -3.71 -0.02 2.49 16 24 H 0.02 0.31 7.56 -51.93 -0.39 -0.08 16 25 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.34 4.74 8.50 -39.30 -0.33 4.40 16 28 H 0.06 1.00 8.06 -51.93 -0.42 0.59 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.13 1.98 8.06 -52.48 -0.42 1.55 16 31 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 34 H 0.02 0.56 7.81 -51.93 -0.41 0.16 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 37 H 0.05 1.06 7.40 -51.93 -0.38 0.67 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -28.80 310.38 -9.90 -38.71 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.57 Total: 4.07 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.88 Total: -11.96 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.65 Total: -51.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.45 Total: -0.78 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.80 -9.90 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.921 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds