Wall clock time and date at job start Mon Mar 30 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99583 * 2 1 4 4 H 1.09003 * 109.52523 * 324.92041 * 3 2 1 5 5 C 1.53038 * 109.49537 * 204.84030 * 3 2 1 6 6 C 1.53049 * 109.53649 * 178.68769 * 5 3 2 7 7 H 1.08997 * 109.49623 * 301.38092 * 6 5 3 8 8 C 1.50704 * 109.49648 * 181.31441 * 6 5 3 9 9 C 1.33384 * 125.20108 * 119.99693 * 8 6 5 10 10 C 1.38422 * 114.91995 * 179.97438 * 9 8 6 11 11 C 1.33392 * 114.92118 * 0.02562 * 10 9 8 12 12 S 1.75883 * 109.59274 * 359.75517 * 11 10 9 13 13 C 1.52756 * 109.38320 * 61.23871 * 6 5 3 14 14 N 1.46934 * 109.00904 * 305.58844 * 13 6 5 15 15 C 1.36939 * 120.62823 * 233.58917 * 14 13 6 16 16 H 1.07996 * 119.99905 * 151.65649 * 15 14 13 17 17 C 1.38808 * 119.99773 * 331.92590 * 15 14 13 18 18 N 1.31616 * 120.00492 * 342.81736 * 17 15 14 19 19 Si 1.86802 * 119.99784 * 162.81823 * 17 15 14 20 20 H 1.48503 * 109.47256 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47450 * 119.99847 * 19 17 15 22 22 H 1.48501 * 109.47146 * 240.00062 * 19 17 15 23 23 C 1.46919 * 118.73899 * 53.30916 * 14 13 6 24 24 H 1.08998 * 109.47381 * 299.99418 * 1 2 3 25 25 H 1.08999 * 109.47169 * 60.00271 * 1 2 3 26 26 H 1.09001 * 109.46608 * 179.97438 * 1 2 3 27 27 H 1.00890 * 111.00025 * 123.95463 * 2 1 3 28 28 H 1.09004 * 109.46085 * 298.70106 * 5 3 2 29 29 H 1.08998 * 109.46257 * 58.66419 * 5 3 2 30 30 H 1.08003 * 122.53819 * 359.95842 * 9 8 6 31 31 H 1.08003 * 122.54018 * 180.02562 * 10 9 8 32 32 H 1.08001 * 125.20281 * 180.02562 * 11 10 9 33 33 H 1.09004 * 109.50850 * 185.70817 * 13 6 5 34 34 H 1.09002 * 109.43448 * 65.42131 * 13 6 5 35 35 H 0.97004 * 119.99884 * 179.97438 * 18 17 15 36 36 H 1.09007 * 109.58399 * 66.43233 * 23 14 13 37 37 H 1.08996 * 109.59196 * 186.85628 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3410 2.0128 -0.5904 5 6 3.4007 1.3792 -0.6060 6 6 3.9370 2.8123 -0.6365 7 1 3.2646 3.4400 -1.2214 8 6 5.3076 2.8232 -1.2630 9 6 5.6444 3.4964 -2.3641 10 6 6.9654 3.3553 -2.7528 11 6 7.7013 2.5671 -1.9675 12 16 6.7094 1.9555 -0.6501 13 6 4.0222 3.3522 0.7899 14 7 2.7088 3.2126 1.4337 15 6 2.0976 4.2924 2.0131 16 1 1.0200 4.3372 2.0689 17 6 2.8628 5.3318 2.5236 18 7 4.1440 5.1496 2.7638 19 14 2.0744 6.9896 2.8696 20 1 0.6331 6.9357 2.5159 21 1 2.2189 7.3153 4.3112 22 1 2.7443 8.0358 2.0561 23 6 2.0611 1.8939 1.4386 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8306 -0.5261 0.7813 28 1 4.0605 0.7574 -0.0010 29 1 3.3605 0.9848 -1.6214 30 1 4.9397 4.1051 -2.9112 31 1 7.3697 3.8462 -3.6257 32 1 8.7473 2.3427 -2.1154 33 1 4.3068 4.4042 0.7646 34 1 4.7654 2.7838 1.3490 35 1 4.6788 5.8762 3.1202 36 1 2.6412 1.2041 2.0517 37 1 1.0522 1.9838 1.8411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:10 Heat of formation + Delta-G solvation = 34.753801 kcal Electronic energy + Delta-G solvation = -18492.504265 eV Core-core repulsion = 15781.946062 eV Total energy + Delta-G solvation = -2710.558203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11067 -38.41618 -36.45676 -34.75558 -32.84796 -30.70184 -29.00761 -27.28946 -25.75828 -24.92389 -23.53837 -22.55857 -21.15552 -20.03023 -18.65812 -17.85984 -16.83461 -16.71133 -16.23654 -15.78964 -15.39639 -15.20719 -15.01488 -14.42189 -14.33467 -13.78104 -13.69482 -13.46253 -13.17946 -13.02995 -12.89650 -12.83837 -12.54529 -12.40082 -12.12679 -12.03434 -11.83641 -11.48543 -11.43231 -11.39521 -10.62433 -9.57279 -9.39737 -9.29999 -8.67332 -7.90997 -5.39259 0.19998 0.82291 1.24491 1.42930 1.45155 1.55380 1.94209 2.46189 3.16440 3.24342 3.70937 3.89200 4.02806 4.19092 4.28516 4.32620 4.39832 4.57188 4.59515 4.66522 4.72727 4.77609 4.81485 4.95004 5.05440 5.06957 5.11653 5.20931 5.32927 5.43743 5.51616 5.58440 5.66487 5.71180 6.05336 6.33743 6.47649 7.08213 7.77684 8.30107 9.13701 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.008403 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.479695 B = 3331.293125 C = 4984.545374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.686 5.686 3 C 0.084 3.916 4 H 0.067 0.933 5 C -0.076 4.076 6 C -0.036 4.036 7 H 0.073 0.927 8 C -0.163 4.163 9 C -0.157 4.157 10 C -0.136 4.136 11 C -0.221 4.221 12 S 0.074 5.926 13 C 0.197 3.803 14 N -0.605 5.605 15 C -0.268 4.268 16 H 0.066 0.934 17 C -0.045 4.045 18 N -0.929 5.929 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.123 3.877 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.344 0.656 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.189 0.811 33 H 0.052 0.948 34 H -0.002 1.002 35 H 0.251 0.749 36 H 0.013 0.987 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 -7.746 -10.126 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.316 5.316 3 C -0.028 4.028 4 H 0.086 0.914 5 C -0.114 4.114 6 C -0.058 4.058 7 H 0.092 0.908 8 C -0.281 4.281 9 C -0.188 4.188 10 C -0.166 4.166 11 C -0.357 4.357 12 S 0.337 5.663 13 C 0.071 3.929 14 N -0.328 5.328 15 C -0.398 4.398 16 H 0.083 0.917 17 C -0.241 4.241 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.218 1.218 22 H -0.216 1.216 23 C -0.004 4.004 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.206 0.794 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.060 0.940 36 H 0.031 0.969 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.003 -8.677 -9.500 13.021 hybrid contribution -0.608 2.277 0.418 2.394 sum 1.395 -6.399 -9.082 11.197 Atomic orbital electron populations 1.22250 0.86999 1.02618 1.00210 1.60617 1.08637 1.12640 1.49711 1.21878 0.95999 0.89236 0.95691 0.91431 1.21325 0.95175 0.94057 1.00884 1.20235 0.90235 0.97941 0.97414 0.90843 1.24536 0.98998 1.04301 1.00311 1.20405 0.97948 1.02676 0.97724 1.20372 0.92909 1.00936 1.02371 1.25933 1.04708 1.05947 0.99073 1.84359 1.02238 1.50040 1.29665 1.20461 0.85619 0.99065 0.87741 1.44196 1.19882 1.04746 1.63975 1.19485 0.91000 0.97396 1.31920 0.91662 1.25800 0.96633 1.02952 0.98759 1.70193 1.07517 1.31989 1.47720 0.85252 0.78432 0.80052 0.76988 1.19021 1.21752 1.21567 1.21731 0.96023 0.87017 0.95674 0.96479 0.91914 0.89542 0.83835 0.92995 0.91037 0.83792 0.81754 0.79397 0.92916 0.98415 0.94005 0.96916 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.50 127.69 1.34 2.03 16 2 N -0.69 -19.33 6.61 -514.19 -3.40 -22.73 16 3 C 0.08 2.89 2.62 44.99 0.12 3.00 16 4 H 0.07 2.46 7.80 -2.39 -0.02 2.44 16 5 C -0.08 -2.63 4.70 30.62 0.14 -2.49 16 6 C -0.04 -1.40 2.70 -11.60 -0.03 -1.43 16 7 H 0.07 2.94 8.09 -2.39 -0.02 2.92 16 8 C -0.16 -5.75 5.10 24.59 0.13 -5.62 16 9 C -0.16 -4.83 10.01 21.21 0.21 -4.62 16 10 C -0.14 -3.48 10.18 21.22 0.22 -3.26 16 11 C -0.22 -5.65 11.23 66.72 0.75 -4.90 16 12 S 0.07 2.37 22.80 -56.49 -1.29 1.08 16 13 C 0.20 9.68 4.53 86.22 0.39 10.07 16 14 N -0.61 -30.70 3.00 -699.92 -2.10 -32.80 16 15 C -0.27 -14.84 9.58 84.03 0.81 -14.04 16 16 H 0.07 3.54 7.88 -2.91 -0.02 3.51 16 17 C -0.05 -2.55 4.91 84.86 0.42 -2.13 16 18 N -0.93 -55.36 11.21 21.65 0.24 -55.12 16 19 Si 0.96 45.03 29.59 68.60 2.03 47.06 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 C 0.12 5.13 5.77 86.36 0.50 5.63 16 24 H 0.02 0.43 7.56 -2.39 -0.02 0.41 16 25 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.34 9.12 8.50 -89.70 -0.76 8.36 16 28 H 0.05 1.85 8.06 -2.38 -0.02 1.83 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.05 2.97 6.06 -2.38 -0.01 2.96 16 34 H 0.00 -0.11 7.81 -2.39 -0.02 -0.13 16 35 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.01 0.55 8.05 -2.38 -0.02 0.53 16 37 H 0.05 2.03 7.40 -2.39 -0.02 2.01 16 Total: -1.00 -63.22 310.38 0.76 -62.45 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.29 Total: 17.81 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.98 Total: -17.75 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -5.25 Total: -110.65 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.29 Total: 1.08 kcal Total: -63.22 0.76 -62.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.207 kcal (2) G-P(sol) polarization free energy of solvation -63.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds