Wall clock time and date at job start Mon Mar 30 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99816 * 2 1 4 4 H 1.09000 * 109.49925 * 36.37207 * 3 2 1 5 5 C 1.53045 * 109.49714 * 156.43120 * 3 2 1 6 6 C 1.53047 * 109.53467 * 58.61942 * 5 3 2 7 7 H 1.08996 * 109.52152 * 301.39624 * 6 5 3 8 8 C 1.50703 * 109.49570 * 181.31563 * 6 5 3 9 9 C 1.33389 * 125.20088 * 119.88028 * 8 6 5 10 10 C 1.38420 * 114.91953 * 179.85889 * 9 8 6 11 11 C 1.33388 * 114.92272 * 0.43443 * 10 9 8 12 12 S 1.75882 * 125.20373 * 300.19000 * 8 6 5 13 13 C 1.53191 * 109.31147 * 61.36601 * 6 5 3 14 14 N 1.46924 * 108.77750 * 305.36662 * 13 6 5 15 15 C 1.36939 * 120.62809 * 233.58909 * 14 13 6 16 16 H 1.07996 * 119.99777 * 151.69796 * 15 14 13 17 17 C 1.38805 * 119.99757 * 331.96811 * 15 14 13 18 18 N 1.31629 * 119.99905 * 160.03506 * 17 15 14 19 19 Si 1.86796 * 120.00325 * 340.02992 * 17 15 14 20 20 H 1.48503 * 109.46984 * 95.06836 * 19 17 15 21 21 H 1.48503 * 109.47522 * 215.07123 * 19 17 15 22 22 H 1.48496 * 109.47303 * 335.07135 * 19 17 15 23 23 C 1.46924 * 118.74112 * 53.85921 * 14 13 6 24 24 H 1.09005 * 109.47054 * 304.71350 * 1 2 3 25 25 H 1.09009 * 109.47155 * 64.71262 * 1 2 3 26 26 H 1.08999 * 109.47139 * 184.71071 * 1 2 3 27 27 H 1.00899 * 111.00215 * 123.95714 * 2 1 3 28 28 H 1.09000 * 109.46169 * 298.60480 * 5 3 2 29 29 H 1.09001 * 109.45257 * 178.63034 * 5 3 2 30 30 H 1.08002 * 122.53982 * 0.02562 * 9 8 6 31 31 H 1.08004 * 122.53849 * 180.20366 * 10 9 8 32 32 H 1.07993 * 125.20314 * 179.79344 * 11 10 9 33 33 H 1.08995 * 109.58557 * 185.57294 * 13 6 5 34 34 H 1.09002 * 109.58776 * 65.15042 * 13 6 5 35 35 H 0.96999 * 119.99451 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.58737 * 65.92710 * 23 14 13 37 37 H 1.08997 * 109.58623 * 186.35950 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3534 2.0076 0.6093 5 6 3.4130 1.3745 0.5769 6 6 4.3074 0.4557 -0.2587 7 1 3.8958 -0.5535 -0.2568 8 6 5.6949 0.4342 0.3291 9 6 6.3200 -0.6524 0.7853 10 6 7.5939 -0.4286 1.2783 11 6 7.9999 0.8411 1.2309 12 16 6.7348 1.8390 0.5257 13 6 4.3695 0.9800 -1.6967 14 7 2.9995 1.1177 -2.2095 15 6 2.6322 0.5228 -3.3869 16 1 1.6061 0.2248 -3.5441 17 6 3.5797 0.2977 -4.3759 18 7 3.3513 -0.5959 -5.3150 19 14 5.1789 1.2629 -4.3743 20 1 6.2318 0.4753 -3.6841 21 1 5.5977 1.5295 -5.7739 22 1 4.9788 2.5514 -3.6637 23 6 2.0328 1.9108 -1.4380 24 1 -0.3633 0.5853 0.8448 25 1 -0.3634 0.4390 -0.9293 26 1 -0.3633 -1.0242 0.0844 27 1 1.8306 -0.5262 0.7813 28 1 3.3868 1.0175 1.6064 29 1 3.8120 2.3886 0.5540 30 1 5.8674 -1.6329 0.7686 31 1 8.2108 -1.2214 1.6750 32 1 8.9589 1.2012 1.5728 33 1 4.9234 0.2768 -2.3185 34 1 4.8641 1.9513 -1.7106 35 1 4.0134 -0.7529 -6.0063 36 1 2.3408 2.9564 -1.4311 37 1 1.0445 1.8217 -1.8889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:14 Heat of formation + Delta-G solvation = 64.829503 kcal Electronic energy + Delta-G solvation = -18836.889449 eV Core-core repulsion = 16127.635426 eV Total energy + Delta-G solvation = -2709.254023 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.85261 -37.27905 -34.69903 -33.03833 -31.20807 -29.72214 -27.87791 -25.39465 -24.53665 -23.71430 -22.09338 -21.46673 -19.27451 -18.68461 -16.88630 -16.57406 -15.53638 -15.20512 -15.16284 -14.43415 -14.02882 -13.80418 -13.44542 -12.87289 -12.73688 -12.64695 -12.46815 -12.01287 -11.92516 -11.80537 -11.67113 -11.44895 -11.00709 -10.90760 -10.60423 -10.43761 -10.15952 -9.82347 -9.74801 -9.39564 -8.60124 -8.34436 -8.25671 -7.88867 -6.81031 -5.84638 -3.18263 1.23850 1.87123 2.25861 2.97355 3.41553 3.55357 3.57557 4.56908 4.62423 4.86533 5.14713 5.20132 5.27140 5.33198 5.55394 5.57692 5.68762 5.71688 5.76273 5.84123 5.89601 6.01001 6.06473 6.21768 6.24388 6.29847 6.41667 6.53114 6.58447 6.64487 6.69988 6.76828 6.91539 7.48277 7.81149 8.07657 8.45358 9.04801 9.83103 10.20909 11.31674 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.009523 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.114896 B = 2939.625163 C = 4181.421865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.666 5.666 3 C 0.070 3.930 4 H 0.036 0.964 5 C -0.103 4.103 6 C -0.035 4.035 7 H 0.102 0.898 8 C -0.142 4.142 9 C -0.157 4.157 10 C -0.128 4.128 11 C -0.233 4.233 12 S 0.085 5.915 13 C 0.141 3.859 14 N -0.586 5.586 15 C -0.241 4.241 16 H 0.085 0.915 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.873 3.127 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.269 1.269 23 C 0.159 3.841 24 H 0.010 0.990 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.330 0.670 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.024 0.976 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 3.197 15.550 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.297 5.297 3 C -0.042 4.042 4 H 0.054 0.946 5 C -0.142 4.142 6 C -0.058 4.058 7 H 0.120 0.880 8 C -0.260 4.260 9 C -0.186 4.186 10 C -0.159 4.159 11 C -0.368 4.368 12 S 0.348 5.652 13 C 0.014 3.986 14 N -0.307 5.307 15 C -0.369 4.369 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.554 5.554 19 Si 0.704 3.296 20 H -0.216 1.216 21 H -0.233 1.233 22 H -0.194 1.194 23 C 0.032 3.968 24 H 0.028 0.972 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.148 4.597 14.356 15.400 hybrid contribution 1.112 -0.850 1.179 1.830 sum 4.260 3.747 15.535 16.539 Atomic orbital electron populations 1.22175 0.88469 1.00813 1.00052 1.60213 1.06724 1.13785 1.48965 1.22193 0.93793 0.89420 0.98770 0.94638 1.21675 0.95102 0.99629 0.97755 1.20410 0.86711 1.02120 0.96519 0.88036 1.24856 1.01143 0.95360 1.04608 1.20140 0.95344 0.99485 1.03645 1.20121 0.96549 0.96498 1.02693 1.25515 1.03733 0.97449 1.10141 1.84252 1.08243 1.12262 1.60466 1.21406 0.88169 0.97754 0.91270 1.44045 1.06398 1.57589 1.22698 1.18872 0.97034 1.31529 0.89507 0.89779 1.25262 0.97730 0.98532 0.96194 1.69841 1.35904 1.32830 1.16818 0.87056 0.84809 0.82052 0.75670 1.21638 1.23266 1.19431 1.21025 0.94381 0.92109 0.89299 0.97195 0.91572 0.92110 0.85229 0.92757 0.91800 0.84382 0.84786 0.82467 0.90886 0.95903 0.92978 0.95794 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.53 60.06 0.63 1.12 16 2 N -0.67 -10.73 5.80 -113.63 -0.66 -11.39 16 3 C 0.07 1.12 2.84 -67.36 -0.19 0.93 16 4 H 0.04 0.51 7.75 -51.93 -0.40 0.11 16 5 C -0.10 -1.60 4.48 -26.68 -0.12 -1.72 16 6 C -0.04 -0.63 2.56 -91.65 -0.23 -0.87 16 7 H 0.10 1.92 7.35 -51.93 -0.38 1.54 16 8 C -0.14 -2.34 5.10 -36.00 -0.18 -2.52 16 9 C -0.16 -2.36 10.01 -41.21 -0.41 -2.77 16 10 C -0.13 -1.70 10.18 -41.21 -0.42 -2.12 16 11 C -0.23 -3.05 11.23 29.04 0.33 -2.73 16 12 S 0.08 1.28 22.81 -107.50 -2.45 -1.17 16 13 C 0.14 3.13 3.43 -3.71 -0.01 3.12 16 14 N -0.59 -13.91 2.67 -172.06 -0.46 -14.37 16 15 C -0.24 -6.78 10.03 -15.06 -0.15 -6.93 16 16 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16 18 N -0.91 -28.43 13.97 55.49 0.78 -27.66 16 19 Si 0.87 23.00 24.36 -169.99 -4.14 18.86 16 20 H -0.29 -7.50 6.72 56.52 0.38 -7.12 16 21 H -0.30 -8.15 7.11 56.52 0.40 -7.74 16 22 H -0.27 -6.92 6.45 56.52 0.36 -6.55 16 23 C 0.16 3.13 6.10 -3.49 -0.02 3.11 16 24 H 0.01 0.12 7.94 -51.93 -0.41 -0.29 16 25 H 0.07 1.02 7.42 -51.92 -0.39 0.63 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.33 4.73 8.29 -39.29 -0.33 4.40 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 30 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.07 1.84 4.59 -51.93 -0.24 1.60 16 34 H 0.02 0.52 6.66 -51.93 -0.35 0.18 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 1.29 7.17 -51.93 -0.37 0.91 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -31.14 301.82 -8.70 -39.84 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.43 Total: 2.19 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.88 Total: -10.85 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.34 Total: -53.41 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.14 Total: 18.86 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.45 Total: -1.17 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.14 -8.70 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.673 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds