Wall clock time and date at job start Mon Mar 30 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99816 * 2 1 4 4 H 1.09000 * 109.49925 * 36.37207 * 3 2 1 5 5 C 1.53045 * 109.49714 * 156.43120 * 3 2 1 6 6 C 1.53047 * 109.53467 * 58.61942 * 5 3 2 7 7 H 1.08996 * 109.52152 * 301.39624 * 6 5 3 8 8 C 1.50703 * 109.49570 * 181.31563 * 6 5 3 9 9 C 1.33389 * 125.20088 * 119.88028 * 8 6 5 10 10 C 1.38420 * 114.91953 * 179.85889 * 9 8 6 11 11 C 1.33388 * 114.92272 * 0.43443 * 10 9 8 12 12 S 1.75882 * 125.20373 * 300.19000 * 8 6 5 13 13 C 1.53191 * 109.31147 * 61.36601 * 6 5 3 14 14 N 1.46924 * 108.77750 * 305.36662 * 13 6 5 15 15 C 1.36939 * 120.62809 * 233.58909 * 14 13 6 16 16 H 1.07996 * 119.99777 * 151.69796 * 15 14 13 17 17 C 1.38805 * 119.99757 * 331.96811 * 15 14 13 18 18 N 1.31629 * 119.99905 * 160.03506 * 17 15 14 19 19 Si 1.86796 * 120.00325 * 340.02992 * 17 15 14 20 20 H 1.48503 * 109.46984 * 95.06836 * 19 17 15 21 21 H 1.48503 * 109.47522 * 215.07123 * 19 17 15 22 22 H 1.48496 * 109.47303 * 335.07135 * 19 17 15 23 23 C 1.46924 * 118.74112 * 53.85921 * 14 13 6 24 24 H 1.09005 * 109.47054 * 304.71350 * 1 2 3 25 25 H 1.09009 * 109.47155 * 64.71262 * 1 2 3 26 26 H 1.08999 * 109.47139 * 184.71071 * 1 2 3 27 27 H 1.00899 * 111.00215 * 123.95714 * 2 1 3 28 28 H 1.09000 * 109.46169 * 298.60480 * 5 3 2 29 29 H 1.09001 * 109.45257 * 178.63034 * 5 3 2 30 30 H 1.08002 * 122.53982 * 0.02562 * 9 8 6 31 31 H 1.08004 * 122.53849 * 180.20366 * 10 9 8 32 32 H 1.07993 * 125.20314 * 179.79344 * 11 10 9 33 33 H 1.08995 * 109.58557 * 185.57294 * 13 6 5 34 34 H 1.09002 * 109.58776 * 65.15042 * 13 6 5 35 35 H 0.96999 * 119.99451 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.58737 * 65.92710 * 23 14 13 37 37 H 1.08997 * 109.58623 * 186.35950 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3534 2.0076 0.6093 5 6 3.4130 1.3745 0.5769 6 6 4.3074 0.4557 -0.2587 7 1 3.8958 -0.5535 -0.2568 8 6 5.6949 0.4342 0.3291 9 6 6.3200 -0.6524 0.7853 10 6 7.5939 -0.4286 1.2783 11 6 7.9999 0.8411 1.2309 12 16 6.7348 1.8390 0.5257 13 6 4.3695 0.9800 -1.6967 14 7 2.9995 1.1177 -2.2095 15 6 2.6322 0.5228 -3.3869 16 1 1.6061 0.2248 -3.5441 17 6 3.5797 0.2977 -4.3759 18 7 3.3513 -0.5959 -5.3150 19 14 5.1789 1.2629 -4.3743 20 1 6.2318 0.4753 -3.6841 21 1 5.5977 1.5295 -5.7739 22 1 4.9788 2.5514 -3.6637 23 6 2.0328 1.9108 -1.4380 24 1 -0.3633 0.5853 0.8448 25 1 -0.3634 0.4390 -0.9293 26 1 -0.3633 -1.0242 0.0844 27 1 1.8306 -0.5262 0.7813 28 1 3.3868 1.0175 1.6064 29 1 3.8120 2.3886 0.5540 30 1 5.8674 -1.6329 0.7686 31 1 8.2108 -1.2214 1.6750 32 1 8.9589 1.2012 1.5728 33 1 4.9234 0.2768 -2.3185 34 1 4.8641 1.9513 -1.7106 35 1 4.0134 -0.7529 -6.0063 36 1 2.3408 2.9564 -1.4311 37 1 1.0445 1.8217 -1.8889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:13 Heat of formation + Delta-G solvation = 43.954883 kcal Electronic energy + Delta-G solvation = -18837.794641 eV Core-core repulsion = 16127.635426 eV Total energy + Delta-G solvation = -2710.159214 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28611 -38.44502 -36.27685 -34.64898 -33.14966 -31.13522 -29.16691 -27.26712 -25.83638 -24.87778 -23.86213 -22.87218 -20.57858 -20.04808 -18.60592 -18.12244 -17.01537 -16.78615 -16.32375 -15.96550 -15.56312 -15.25676 -15.15857 -14.51564 -14.16926 -13.95848 -13.59908 -13.53807 -13.40418 -13.14888 -13.12064 -12.97645 -12.51966 -12.43400 -12.22679 -11.99543 -11.72914 -11.44802 -11.39932 -11.32009 -10.70310 -9.54700 -9.37515 -9.17459 -8.72875 -8.11953 -5.40279 0.12754 0.75076 1.15898 1.29292 1.37666 1.46146 1.88862 2.43116 3.05889 3.31438 3.49523 3.74974 3.96018 4.04589 4.25209 4.32977 4.36716 4.47800 4.61061 4.62522 4.67431 4.74016 4.75797 4.81985 4.94079 4.97750 5.05855 5.12460 5.17018 5.26901 5.38127 5.48033 5.64326 5.92836 6.18179 6.29297 6.68942 6.97520 7.68997 8.09998 9.08657 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.009523 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.114896 B = 2939.625163 C = 4181.421865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.691 5.691 3 C 0.079 3.921 4 H 0.064 0.936 5 C -0.095 4.095 6 C -0.021 4.021 7 H 0.087 0.913 8 C -0.174 4.174 9 C -0.152 4.152 10 C -0.137 4.137 11 C -0.217 4.217 12 S 0.068 5.932 13 C 0.142 3.858 14 N -0.599 5.599 15 C -0.220 4.220 16 H 0.050 0.950 17 C -0.037 4.037 18 N -0.959 5.959 19 Si 0.935 3.065 20 H -0.286 1.286 21 H -0.312 1.312 22 H -0.259 1.259 23 C 0.151 3.849 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.343 0.657 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.164 0.836 32 H 0.189 0.811 33 H 0.040 0.960 34 H 0.023 0.977 35 H 0.258 0.742 36 H 0.036 0.964 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 3.996 18.636 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.324 5.324 3 C -0.032 4.032 4 H 0.082 0.918 5 C -0.134 4.134 6 C -0.043 4.043 7 H 0.105 0.895 8 C -0.292 4.292 9 C -0.182 4.182 10 C -0.167 4.167 11 C -0.352 4.352 12 S 0.330 5.670 13 C 0.016 3.984 14 N -0.321 5.321 15 C -0.350 4.350 16 H 0.068 0.932 17 C -0.231 4.231 18 N -0.607 5.607 19 Si 0.765 3.235 20 H -0.213 1.213 21 H -0.241 1.241 22 H -0.184 1.184 23 C 0.025 3.975 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.162 0.838 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.182 0.818 32 H 0.206 0.794 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.570 5.424 17.507 18.889 hybrid contribution 0.643 -1.130 0.312 1.337 sum 5.213 4.293 17.819 19.055 Atomic orbital electron populations 1.22130 0.87404 1.01650 0.99922 1.60104 1.08020 1.14095 1.50156 1.22022 0.94989 0.89873 0.96286 0.91805 1.21639 0.93804 0.99368 0.98542 1.20053 0.88613 1.01542 0.94066 0.89486 1.24703 1.00914 0.96641 1.06936 1.20442 0.95988 0.99392 1.02386 1.20409 0.96098 0.97516 1.02661 1.25924 1.04004 0.96856 1.08388 1.84278 1.09156 1.12405 1.61115 1.21295 0.86585 0.96911 0.93568 1.44127 1.07755 1.58262 1.21995 1.18771 0.95439 1.29716 0.91057 0.93206 1.25802 1.01055 0.99774 0.96433 1.69963 1.37362 1.35083 1.18247 0.86062 0.81441 0.80999 0.75019 1.21312 1.24072 1.18368 1.21251 0.92717 0.92357 0.91155 0.94674 0.93714 0.91313 0.83847 0.90062 0.91353 0.83733 0.81845 0.79378 0.94225 0.95951 0.93284 0.94652 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.02 10.53 127.69 1.34 2.36 16 2 N -0.69 -21.20 5.80 -513.42 -2.98 -24.18 16 3 C 0.08 2.38 2.84 45.14 0.13 2.51 16 4 H 0.06 1.61 7.75 -2.39 -0.02 1.59 16 5 C -0.10 -2.70 4.48 30.62 0.14 -2.56 16 6 C -0.02 -0.71 2.56 -11.46 -0.03 -0.74 16 7 H 0.09 3.23 7.35 -2.39 -0.02 3.21 16 8 C -0.17 -5.39 5.10 24.59 0.13 -5.26 16 9 C -0.15 -4.18 10.01 21.22 0.21 -3.97 16 10 C -0.14 -3.12 10.18 21.22 0.22 -2.90 16 11 C -0.22 -4.83 11.23 66.72 0.75 -4.08 16 12 S 0.07 1.87 22.81 -56.49 -1.29 0.58 16 13 C 0.14 6.27 3.43 86.36 0.30 6.56 16 14 N -0.60 -28.59 2.67 -698.28 -1.87 -30.46 16 15 C -0.22 -12.76 10.03 84.03 0.84 -11.92 16 16 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 17 C -0.04 -2.23 5.24 84.86 0.44 -1.79 16 18 N -0.96 -62.29 13.97 21.65 0.30 -61.99 16 19 Si 0.93 48.95 24.36 68.60 1.67 50.62 16 20 H -0.29 -14.64 6.72 99.48 0.67 -13.97 16 21 H -0.31 -16.51 7.11 99.48 0.71 -15.80 16 22 H -0.26 -12.94 6.45 99.48 0.64 -12.29 16 23 C 0.15 5.83 6.10 86.51 0.53 6.36 16 24 H 0.03 0.76 7.94 -2.38 -0.02 0.74 16 25 H 0.04 1.36 7.42 -2.38 -0.02 1.35 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.34 9.05 8.29 -89.69 -0.74 8.30 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 30 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 31 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.04 2.00 4.59 -2.39 -0.01 1.99 16 34 H 0.02 1.00 6.66 -2.39 -0.02 0.98 16 35 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 2.09 7.17 -2.39 -0.02 2.07 16 Total: -1.00 -69.29 301.82 1.05 -68.24 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.22 Total: 12.61 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 5.00 Total: -15.42 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -4.54 Total: -116.63 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.67 Total: 50.62 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.29 Total: 0.58 kcal Total: -69.29 1.05 -68.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.196 kcal (2) G-P(sol) polarization free energy of solvation -69.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds