Wall clock time and date at job start Mon Mar 30 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99851 * 2 1 4 4 H 1.08998 * 109.50028 * 327.01266 * 3 2 1 5 5 C 1.53038 * 109.52408 * 206.92786 * 3 2 1 6 6 C 1.53045 * 109.54023 * 301.40030 * 5 3 2 7 7 H 1.08998 * 109.49466 * 58.58319 * 6 5 3 8 8 C 1.50702 * 109.49986 * 178.68237 * 6 5 3 9 9 C 1.33385 * 125.19982 * 239.55939 * 8 6 5 10 10 C 1.38427 * 114.91668 * 179.85740 * 9 8 6 11 11 C 1.33391 * 114.92304 * 0.43403 * 10 9 8 12 12 S 1.75879 * 125.20009 * 59.86162 * 8 6 5 13 13 C 1.53190 * 109.31034 * 298.63516 * 6 5 3 14 14 N 1.46925 * 108.77586 * 54.63284 * 13 6 5 15 15 C 1.36941 * 120.63018 * 126.37196 * 14 13 6 16 16 H 1.08000 * 119.99580 * 332.26412 * 15 14 13 17 17 C 1.38808 * 120.00207 * 152.26212 * 15 14 13 18 18 N 1.31615 * 120.00165 * 161.70441 * 17 15 14 19 19 Si 1.86795 * 120.00148 * 341.70703 * 17 15 14 20 20 H 1.48495 * 109.47362 * 95.21180 * 19 17 15 21 21 H 1.48494 * 109.47620 * 215.21417 * 19 17 15 22 22 H 1.48510 * 109.47044 * 335.21553 * 19 17 15 23 23 C 1.46921 * 118.74223 * 306.38867 * 14 13 6 24 24 H 1.08996 * 109.47084 * 64.33942 * 1 2 3 25 25 H 1.08995 * 109.46946 * 184.34879 * 1 2 3 26 26 H 1.09005 * 109.46649 * 304.34548 * 1 2 3 27 27 H 1.00901 * 110.99747 * 123.95469 * 2 1 3 28 28 H 1.09000 * 109.46015 * 181.37995 * 5 3 2 29 29 H 1.09006 * 109.46021 * 61.42043 * 5 3 2 30 30 H 1.08001 * 122.54260 * 0.02562 * 9 8 6 31 31 H 1.08001 * 122.54107 * 180.19455 * 10 9 8 32 32 H 1.07996 * 125.20355 * 179.75049 * 11 10 9 33 33 H 1.09006 * 109.58662 * 174.42383 * 13 6 5 34 34 H 1.09000 * 109.58702 * 294.69929 * 13 6 5 35 35 H 0.97001 * 120.00489 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.58985 * 173.39784 * 23 14 13 37 37 H 1.09005 * 109.58791 * 293.82842 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3213 2.0199 -0.5594 5 6 3.3793 1.3881 -0.6532 6 6 4.3180 0.4524 0.1122 7 1 3.9060 -0.5567 0.1111 8 6 5.6712 0.4447 -0.5510 9 6 6.2746 -0.6331 -1.0544 10 6 7.5160 -0.3961 -1.6191 11 6 7.9247 0.8725 -1.5660 12 16 6.6997 1.8541 -0.7726 13 6 4.4587 0.9457 1.5556 14 7 3.1188 1.0711 2.1453 15 6 2.8159 0.4500 3.3275 16 1 3.3361 -0.4528 3.6120 17 6 1.8404 0.9806 4.1603 18 7 1.2918 0.2306 5.0925 19 14 1.3060 2.7590 3.9581 20 1 0.0959 2.8177 3.0994 21 1 0.9961 3.3374 5.2901 22 1 2.4012 3.5359 3.3237 23 6 2.1099 1.8751 1.4423 24 1 -0.3633 0.4450 -0.9263 25 1 -0.3633 -1.0247 0.0779 26 1 -0.3633 0.5798 0.8486 27 1 1.8306 -0.5261 0.7814 28 1 3.7794 2.4018 -0.6306 29 1 3.2969 1.0534 -1.6873 30 1 5.8272 -1.6157 -1.0262 31 1 8.1105 -1.1797 -2.0651 32 1 8.8642 1.2406 -1.9511 33 1 5.0456 0.2297 2.1309 34 1 4.9559 1.9157 1.5635 35 1 0.6098 0.6013 5.6743 36 1 1.1470 1.7723 1.9427 37 1 2.4133 2.9221 1.4406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:17 Heat of formation + Delta-G solvation = 59.713417 kcal Electronic energy + Delta-G solvation = -18778.802461 eV Core-core repulsion = 16069.326588 eV Total energy + Delta-G solvation = -2709.475873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.96259 -37.37406 -34.34736 -33.38586 -31.18882 -29.75892 -27.95049 -25.34224 -24.48710 -23.84839 -21.97234 -21.60876 -19.34116 -18.78984 -16.93200 -16.64150 -15.78108 -15.34869 -14.65404 -14.35991 -14.00851 -13.89204 -13.59087 -13.06497 -12.70523 -12.53469 -12.38483 -12.13414 -11.94430 -11.92813 -11.70006 -11.41308 -11.15249 -10.82163 -10.67723 -10.46117 -10.15675 -9.92299 -9.81424 -9.55259 -8.82115 -8.38894 -8.28374 -7.90530 -7.00739 -6.02021 -3.40673 1.21038 1.83897 2.22930 2.94116 3.23923 3.42433 3.43962 4.44544 4.71718 4.86556 5.13102 5.17864 5.28046 5.33818 5.52456 5.59822 5.73113 5.77221 5.81779 5.85189 6.01114 6.04599 6.11234 6.22211 6.27944 6.30825 6.36711 6.44501 6.56235 6.58246 6.68145 6.72040 6.86357 7.55111 7.88135 8.02312 8.25289 8.85033 9.63356 9.99816 11.13384 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024142 B = 0.006547 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.545428 B = 4275.563607 C = 4682.202603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.684 5.684 3 C 0.068 3.932 4 H 0.068 0.932 5 C -0.088 4.088 6 C -0.038 4.038 7 H 0.097 0.903 8 C -0.138 4.138 9 C -0.155 4.155 10 C -0.128 4.128 11 C -0.234 4.234 12 S 0.091 5.909 13 C 0.157 3.843 14 N -0.601 5.601 15 C -0.263 4.263 16 H 0.089 0.911 17 C 0.026 3.974 18 N -0.907 5.907 19 Si 0.882 3.118 20 H -0.292 1.292 21 H -0.303 1.303 22 H -0.268 1.268 23 C 0.094 3.906 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.022 0.978 27 H 0.359 0.641 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.157 0.843 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 1.540 -13.679 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.317 5.317 3 C -0.044 4.044 4 H 0.086 0.914 5 C -0.126 4.126 6 C -0.060 4.060 7 H 0.115 0.885 8 C -0.256 4.256 9 C -0.185 4.185 10 C -0.159 4.159 11 C -0.369 4.369 12 S 0.354 5.646 13 C 0.030 3.970 14 N -0.324 5.324 15 C -0.391 4.391 16 H 0.107 0.893 17 C -0.173 4.173 18 N -0.549 5.549 19 Si 0.713 3.287 20 H -0.220 1.220 21 H -0.231 1.231 22 H -0.193 1.193 23 C -0.033 4.033 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.180 0.820 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.175 0.825 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.178 2.968 -13.819 15.852 hybrid contribution -0.413 -0.161 0.560 0.714 sum 6.765 2.807 -13.258 15.147 Atomic orbital electron populations 1.22125 0.89129 1.01173 0.99590 1.60693 1.06770 1.13321 1.50920 1.22009 0.95400 0.90493 0.96539 0.91358 1.21462 0.94193 0.98219 0.98734 1.20383 0.87715 1.02078 0.95863 0.88459 1.24740 1.00879 0.95332 1.04610 1.20132 0.95848 0.99600 1.02891 1.20120 0.96884 0.96472 1.02471 1.25537 1.04201 0.97630 1.09523 1.84291 1.10839 1.12456 1.57034 1.21025 0.87290 0.98229 0.90436 1.44313 1.06273 1.58749 1.23040 1.18947 1.20522 1.05322 0.94325 0.89332 1.25272 0.98463 0.97506 0.96089 1.69797 1.27568 1.35295 1.22265 0.86980 0.78201 0.87787 0.75747 1.21997 1.23113 1.19311 1.22059 0.94114 0.94526 0.92571 0.92817 0.92031 0.95981 0.81973 0.92529 0.91968 0.84457 0.84870 0.82532 0.91539 0.95776 0.92718 0.91024 0.95204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.48 60.07 0.63 1.12 16 2 N -0.68 -12.15 6.04 -113.88 -0.69 -12.84 16 3 C 0.07 1.20 2.87 -67.59 -0.19 1.00 16 4 H 0.07 1.12 7.82 -51.93 -0.41 0.71 16 5 C -0.09 -1.40 4.81 -26.69 -0.13 -1.53 16 6 C -0.04 -0.63 2.47 -91.65 -0.23 -0.86 16 7 H 0.10 1.69 7.12 -51.93 -0.37 1.32 16 8 C -0.14 -2.04 5.10 -36.00 -0.18 -2.22 16 9 C -0.16 -2.11 10.02 -41.21 -0.41 -2.52 16 10 C -0.13 -1.54 10.18 -41.21 -0.42 -1.96 16 11 C -0.23 -2.75 11.23 29.04 0.33 -2.43 16 12 S 0.09 1.22 22.80 -107.50 -2.45 -1.23 16 13 C 0.16 3.05 5.76 -3.71 -0.02 3.03 16 14 N -0.60 -13.63 2.05 -172.32 -0.35 -13.98 16 15 C -0.26 -7.05 10.05 -15.06 -0.15 -7.20 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.03 0.73 5.28 -17.43 -0.09 0.64 16 18 N -0.91 -27.16 13.97 55.49 0.78 -26.39 16 19 Si 0.88 22.17 24.32 -169.99 -4.13 18.04 16 20 H -0.29 -7.15 6.73 56.52 0.38 -6.77 16 21 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 22 H -0.27 -6.63 6.27 56.52 0.35 -6.28 16 23 C 0.09 2.00 3.64 -3.71 -0.01 1.99 16 24 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.02 0.39 7.44 -51.93 -0.39 0.01 16 27 H 0.36 7.20 7.24 -39.29 -0.28 6.91 16 28 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 34 H 0.02 0.47 7.83 -51.93 -0.41 0.07 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.68 3.76 -51.93 -0.20 1.48 16 37 H 0.03 0.64 6.87 -51.93 -0.36 0.29 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -28.60 300.18 -8.61 -37.21 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.40 Total: 5.61 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.89 Total: -10.94 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.27 Total: -53.21 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.13 Total: 18.04 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.45 Total: -1.23 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.60 -8.61 -37.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.925 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds