Wall clock time and date at job start Mon Mar 30 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99851 * 2 1 4 4 H 1.08998 * 109.50028 * 327.01266 * 3 2 1 5 5 C 1.53038 * 109.52408 * 206.92786 * 3 2 1 6 6 C 1.53045 * 109.54023 * 301.40030 * 5 3 2 7 7 H 1.08998 * 109.49466 * 58.58319 * 6 5 3 8 8 C 1.50702 * 109.49986 * 178.68237 * 6 5 3 9 9 C 1.33385 * 125.19982 * 239.55939 * 8 6 5 10 10 C 1.38427 * 114.91668 * 179.85740 * 9 8 6 11 11 C 1.33391 * 114.92304 * 0.43403 * 10 9 8 12 12 S 1.75879 * 125.20009 * 59.86162 * 8 6 5 13 13 C 1.53190 * 109.31034 * 298.63516 * 6 5 3 14 14 N 1.46925 * 108.77586 * 54.63284 * 13 6 5 15 15 C 1.36941 * 120.63018 * 126.37196 * 14 13 6 16 16 H 1.08000 * 119.99580 * 332.26412 * 15 14 13 17 17 C 1.38808 * 120.00207 * 152.26212 * 15 14 13 18 18 N 1.31615 * 120.00165 * 161.70441 * 17 15 14 19 19 Si 1.86795 * 120.00148 * 341.70703 * 17 15 14 20 20 H 1.48495 * 109.47362 * 95.21180 * 19 17 15 21 21 H 1.48494 * 109.47620 * 215.21417 * 19 17 15 22 22 H 1.48510 * 109.47044 * 335.21553 * 19 17 15 23 23 C 1.46921 * 118.74223 * 306.38867 * 14 13 6 24 24 H 1.08996 * 109.47084 * 64.33942 * 1 2 3 25 25 H 1.08995 * 109.46946 * 184.34879 * 1 2 3 26 26 H 1.09005 * 109.46649 * 304.34548 * 1 2 3 27 27 H 1.00901 * 110.99747 * 123.95469 * 2 1 3 28 28 H 1.09000 * 109.46015 * 181.37995 * 5 3 2 29 29 H 1.09006 * 109.46021 * 61.42043 * 5 3 2 30 30 H 1.08001 * 122.54260 * 0.02562 * 9 8 6 31 31 H 1.08001 * 122.54107 * 180.19455 * 10 9 8 32 32 H 1.07996 * 125.20355 * 179.75049 * 11 10 9 33 33 H 1.09006 * 109.58662 * 174.42383 * 13 6 5 34 34 H 1.09000 * 109.58702 * 294.69929 * 13 6 5 35 35 H 0.97001 * 120.00489 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.58985 * 173.39784 * 23 14 13 37 37 H 1.09005 * 109.58791 * 293.82842 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3213 2.0199 -0.5594 5 6 3.3793 1.3881 -0.6532 6 6 4.3180 0.4524 0.1122 7 1 3.9060 -0.5567 0.1111 8 6 5.6712 0.4447 -0.5510 9 6 6.2746 -0.6331 -1.0544 10 6 7.5160 -0.3961 -1.6191 11 6 7.9247 0.8725 -1.5660 12 16 6.6997 1.8541 -0.7726 13 6 4.4587 0.9457 1.5556 14 7 3.1188 1.0711 2.1453 15 6 2.8159 0.4500 3.3275 16 1 3.3361 -0.4528 3.6120 17 6 1.8404 0.9806 4.1603 18 7 1.2918 0.2306 5.0925 19 14 1.3060 2.7590 3.9581 20 1 0.0959 2.8177 3.0994 21 1 0.9961 3.3374 5.2901 22 1 2.4012 3.5359 3.3237 23 6 2.1099 1.8751 1.4423 24 1 -0.3633 0.4450 -0.9263 25 1 -0.3633 -1.0247 0.0779 26 1 -0.3633 0.5798 0.8486 27 1 1.8306 -0.5261 0.7814 28 1 3.7794 2.4018 -0.6306 29 1 3.2969 1.0534 -1.6873 30 1 5.8272 -1.6157 -1.0262 31 1 8.1105 -1.1797 -2.0651 32 1 8.8642 1.2406 -1.9511 33 1 5.0456 0.2297 2.1309 34 1 4.9559 1.9157 1.5635 35 1 0.6098 0.6013 5.6743 36 1 1.1470 1.7723 1.9427 37 1 2.4133 2.9221 1.4406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:16 Heat of formation + Delta-G solvation = 41.915075 kcal Electronic energy + Delta-G solvation = -18779.574255 eV Core-core repulsion = 16069.326588 eV Total energy + Delta-G solvation = -2710.247667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42807 -38.47182 -35.97096 -34.95409 -33.09249 -31.18524 -29.18267 -27.22073 -25.85018 -25.04073 -23.52633 -23.09950 -20.67282 -20.01304 -18.67999 -18.06805 -17.33000 -16.58230 -16.14274 -15.93266 -15.59256 -15.31595 -15.28830 -14.61625 -14.04025 -13.87716 -13.71599 -13.54322 -13.41967 -13.30850 -13.04351 -12.91970 -12.52489 -12.47490 -12.29972 -11.91651 -11.73117 -11.54562 -11.37607 -11.27790 -10.81774 -9.59048 -9.35237 -9.29189 -8.85751 -8.19909 -5.53738 0.19854 0.82193 1.21863 1.23182 1.35564 1.42782 1.95459 2.35307 3.00546 3.21657 3.45858 3.80128 3.93172 4.10215 4.26715 4.30283 4.35138 4.47711 4.53587 4.64607 4.67623 4.71348 4.78701 4.81951 4.85134 5.00056 5.01486 5.04867 5.24436 5.32805 5.42954 5.53620 5.69961 5.80961 6.09326 6.18076 6.45337 6.85088 7.56070 7.96303 8.99288 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024142 B = 0.006547 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.545428 B = 4275.563607 C = 4682.202603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.681 5.681 3 C 0.073 3.927 4 H 0.089 0.911 5 C -0.081 4.081 6 C -0.022 4.022 7 H 0.085 0.915 8 C -0.166 4.166 9 C -0.150 4.150 10 C -0.137 4.137 11 C -0.219 4.219 12 S 0.078 5.922 13 C 0.157 3.843 14 N -0.610 5.610 15 C -0.243 4.243 16 H 0.058 0.942 17 C -0.028 4.028 18 N -0.953 5.953 19 Si 0.940 3.060 20 H -0.282 1.282 21 H -0.313 1.313 22 H -0.260 1.260 23 C 0.092 3.908 24 H 0.079 0.921 25 H 0.069 0.931 26 H -0.001 1.001 27 H 0.344 0.656 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.161 0.839 32 H 0.186 0.814 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.049 0.951 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 2.388 -16.455 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.312 5.312 3 C -0.039 4.039 4 H 0.108 0.892 5 C -0.119 4.119 6 C -0.044 4.044 7 H 0.103 0.897 8 C -0.284 4.284 9 C -0.181 4.181 10 C -0.167 4.167 11 C -0.354 4.354 12 S 0.341 5.659 13 C 0.032 3.968 14 N -0.334 5.334 15 C -0.372 4.372 16 H 0.076 0.924 17 C -0.223 4.223 18 N -0.599 5.599 19 Si 0.770 3.230 20 H -0.210 1.210 21 H -0.242 1.242 22 H -0.184 1.184 23 C -0.035 4.035 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.018 0.982 27 H 0.162 0.838 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.178 0.822 32 H 0.203 0.797 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.384 3.836 -16.653 19.035 hybrid contribution -0.658 -0.511 1.355 1.591 sum 7.726 3.325 -15.298 17.458 Atomic orbital electron populations 1.22212 0.88208 1.01678 0.99908 1.60770 1.07581 1.13101 1.49726 1.22029 0.97054 0.90540 0.94313 0.89249 1.21424 0.92842 0.98540 0.99082 1.20033 0.89256 1.01255 0.93836 0.89707 1.24524 1.00668 0.96593 1.06629 1.20400 0.96349 0.99512 1.01803 1.20381 0.96465 0.97400 1.02490 1.25919 1.04419 0.97113 1.07966 1.84311 1.11533 1.12443 1.57652 1.21100 0.85405 0.98142 0.92161 1.44356 1.08091 1.58740 1.22188 1.18839 1.18916 1.04029 0.95449 0.92450 1.25805 0.99385 1.00738 0.96387 1.69919 1.29113 1.36841 1.24042 0.86029 0.78339 0.83452 0.75143 1.20976 1.24203 1.18433 1.22100 0.92386 0.94480 0.94486 0.90244 0.91191 0.98190 0.83763 0.91821 0.90491 0.83921 0.82157 0.79670 0.92938 0.95346 0.93028 0.93314 0.94893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 10.48 127.69 1.34 2.27 16 2 N -0.68 -23.35 6.04 -514.20 -3.11 -26.45 16 3 C 0.07 2.43 2.87 44.99 0.13 2.56 16 4 H 0.09 2.65 7.82 -2.39 -0.02 2.63 16 5 C -0.08 -2.40 4.81 30.62 0.15 -2.25 16 6 C -0.02 -0.70 2.47 -11.46 -0.03 -0.72 16 7 H 0.08 2.91 7.12 -2.39 -0.02 2.89 16 8 C -0.17 -4.63 5.10 24.59 0.13 -4.50 16 9 C -0.15 -3.74 10.02 21.22 0.21 -3.53 16 10 C -0.14 -2.82 10.18 21.22 0.22 -2.60 16 11 C -0.22 -4.38 11.23 66.72 0.75 -3.63 16 12 S 0.08 1.91 22.80 -56.49 -1.29 0.63 16 13 C 0.16 6.09 5.76 86.36 0.50 6.59 16 14 N -0.61 -27.76 2.05 -699.09 -1.43 -29.20 16 15 C -0.24 -13.38 10.05 84.03 0.84 -12.53 16 16 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 17 C -0.03 -1.61 5.28 84.86 0.45 -1.17 16 18 N -0.95 -59.08 13.97 21.65 0.30 -58.78 16 19 Si 0.94 46.58 24.32 68.60 1.67 48.25 16 20 H -0.28 -13.41 6.73 99.48 0.67 -12.74 16 21 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 22 H -0.26 -12.35 6.27 99.48 0.62 -11.73 16 23 C 0.09 3.80 3.64 86.37 0.31 4.12 16 24 H 0.08 2.06 8.13 -2.39 -0.02 2.04 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 26 H 0.00 -0.02 7.44 -2.38 -0.02 -0.04 16 27 H 0.34 13.77 7.24 -89.69 -0.65 13.12 16 28 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 29 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 31 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.05 2.14 7.93 -2.38 -0.02 2.12 16 34 H 0.03 1.09 7.83 -2.39 -0.02 1.07 16 35 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.05 2.26 3.76 -2.39 -0.01 2.25 16 37 H 0.03 1.36 6.87 -2.38 -0.02 1.34 16 Total: -1.00 -62.33 300.18 1.43 -60.90 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.29 Total: 20.05 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.99 Total: -15.40 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.24 Total: -114.43 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.29 Total: 0.63 kcal Total: -62.33 1.43 -60.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.812 kcal (2) G-P(sol) polarization free energy of solvation -62.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds