Wall clock time and date at job start Mon Mar 30 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99804 * 2 1 4 4 H 1.08998 * 109.49871 * 34.93049 * 3 2 1 5 5 C 1.53043 * 109.49683 * 154.99918 * 3 2 1 6 6 C 1.53034 * 109.53495 * 181.31220 * 5 3 2 7 7 H 1.09002 * 109.49925 * 58.62257 * 6 5 3 8 8 C 1.50702 * 109.49846 * 178.68588 * 6 5 3 9 9 C 1.33389 * 125.20232 * 240.00515 * 8 6 5 10 10 C 1.38422 * 114.92172 * 180.02562 * 9 8 6 11 11 C 1.33393 * 114.92123 * 0.02562 * 10 9 8 12 12 S 1.75880 * 125.20513 * 60.03787 * 8 6 5 13 13 C 1.53192 * 109.31760 * 298.63318 * 6 5 3 14 14 N 1.46933 * 108.77371 * 54.63815 * 13 6 5 15 15 C 1.36932 * 120.63091 * 126.41220 * 14 13 6 16 16 H 1.08010 * 119.99956 * 207.66408 * 15 14 13 17 17 C 1.38811 * 120.00234 * 27.66212 * 15 14 13 18 18 N 1.31615 * 119.99552 * 17.37115 * 17 15 14 19 19 Si 1.86795 * 120.00080 * 197.36424 * 17 15 14 20 20 H 1.48496 * 109.47035 * 90.00174 * 19 17 15 21 21 H 1.48502 * 109.47309 * 210.00262 * 19 17 15 22 22 H 1.48506 * 109.47576 * 330.00380 * 19 17 15 23 23 C 1.46923 * 118.73456 * 306.39302 * 14 13 6 24 24 H 1.08999 * 109.47303 * 60.00189 * 1 2 3 25 25 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47384 * 300.00136 * 1 2 3 27 27 H 1.00907 * 110.99952 * 123.94815 * 2 1 3 28 28 H 1.09008 * 109.45799 * 61.29652 * 5 3 2 29 29 H 1.08996 * 109.44767 * 301.33051 * 5 3 2 30 30 H 1.08003 * 122.54117 * 0.02562 * 9 8 6 31 31 H 1.08000 * 122.54220 * 180.02562 * 10 9 8 32 32 H 1.07997 * 125.20373 * 179.73200 * 11 10 9 33 33 H 1.08999 * 109.59031 * 174.42016 * 13 6 5 34 34 H 1.08995 * 109.59110 * 294.85398 * 13 6 5 35 35 H 0.97005 * 119.99662 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.58869 * 293.81568 * 23 14 13 37 37 H 1.09000 * 109.58647 * 173.39727 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3393 2.0130 0.5883 5 6 3.3991 1.3798 0.6097 6 6 3.9353 2.8128 0.6401 7 1 3.2614 3.4412 1.2226 8 6 5.3043 2.8244 1.2701 9 6 5.6382 3.4987 2.3715 10 6 6.9582 3.3581 2.7638 11 6 7.6964 2.5701 1.9806 12 16 6.7062 1.9516 0.6651 13 6 4.0269 3.3501 -0.7915 14 7 2.7126 3.2112 -1.4338 15 6 2.1034 4.2901 -2.0166 16 1 1.0260 4.3320 -2.0816 17 6 2.8702 5.3300 -2.5240 18 7 4.1519 5.1473 -2.7614 19 14 2.0832 6.9883 -2.8700 20 1 2.1750 7.8422 -1.6585 21 1 2.7929 7.6480 -3.9954 22 1 0.6560 6.7934 -3.2311 23 6 2.0649 1.8924 -1.4390 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8306 -0.5261 0.7815 28 1 4.0605 0.7573 0.0070 29 1 3.3559 0.9865 1.6253 30 1 4.9321 4.1082 2.9160 31 1 7.3600 3.8493 3.6377 32 1 8.7430 2.3489 2.1292 33 1 4.3134 4.4016 -0.7697 34 1 4.7684 2.7787 -1.3496 35 1 4.6877 5.8739 -3.1163 36 1 2.6465 1.2021 -2.0498 37 1 1.0571 1.9820 -1.8443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:19 Heat of formation + Delta-G solvation = 53.661316 kcal Electronic energy + Delta-G solvation = -18485.940271 eV Core-core repulsion = 15776.201959 eV Total energy + Delta-G solvation = -2709.738312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.55290 -37.13838 -34.91830 -33.04678 -31.03064 -29.22984 -27.59698 -25.40416 -24.53906 -23.58337 -21.91064 -20.93594 -19.46497 -18.67700 -16.79108 -16.43710 -15.45015 -15.10877 -14.70401 -14.36482 -14.14313 -13.63972 -13.24730 -12.91820 -12.67094 -12.54148 -12.42040 -12.04180 -11.94172 -11.63886 -11.25600 -11.04756 -10.89270 -10.73629 -10.64133 -10.26043 -10.08824 -9.93681 -9.72869 -9.62166 -8.52367 -8.27345 -8.10134 -8.07516 -6.70038 -5.80320 -3.22794 1.39349 2.03558 2.42924 3.10079 3.37527 3.44377 3.45572 4.36539 4.59009 5.09146 5.31417 5.33715 5.46465 5.52100 5.58027 5.64417 5.68340 5.78864 5.86991 5.98099 6.05639 6.08277 6.23756 6.29308 6.41905 6.54549 6.63812 6.71261 6.76750 6.88404 6.94259 7.27024 7.41378 7.61976 7.66455 7.78815 8.42950 9.18575 9.82041 10.38243 11.28078 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.008405 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.880672 B = 3330.382121 C = 4988.004815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.690 5.690 3 C 0.070 3.930 4 H 0.042 0.958 5 C -0.101 4.101 6 C -0.048 4.048 7 H 0.080 0.920 8 C -0.131 4.131 9 C -0.164 4.164 10 C -0.129 4.129 11 C -0.240 4.240 12 S 0.106 5.894 13 C 0.182 3.818 14 N -0.590 5.590 15 C -0.256 4.256 16 H 0.066 0.934 17 C 0.005 3.995 18 N -0.898 5.898 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.159 3.841 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.333 0.667 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.024 0.976 35 H 0.255 0.745 36 H 0.028 0.972 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 -7.339 10.025 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.320 5.320 3 C -0.041 4.041 4 H 0.060 0.940 5 C -0.140 4.140 6 C -0.071 4.071 7 H 0.099 0.901 8 C -0.249 4.249 9 C -0.194 4.194 10 C -0.160 4.160 11 C -0.375 4.375 12 S 0.370 5.630 13 C 0.055 3.945 14 N -0.312 5.312 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.032 3.968 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.150 0.850 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.174 0.826 33 H 0.110 0.890 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.163 -8.236 7.998 11.683 hybrid contribution -0.673 2.173 2.043 3.057 sum 1.490 -6.064 10.041 11.824 Atomic orbital electron populations 1.22193 0.88320 1.00949 1.00447 1.60415 1.07317 1.15004 1.49305 1.22165 0.94365 0.87611 0.99984 0.94024 1.21655 0.96583 0.96476 0.99245 1.20652 0.88769 0.96739 1.00928 0.90149 1.24693 0.99470 1.01913 0.98847 1.20068 0.96754 1.04041 0.98495 1.20057 0.93831 1.00854 1.01281 1.25542 1.03621 1.07320 1.01022 1.84317 1.01677 1.48876 1.28172 1.20888 0.86910 1.01701 0.85009 1.44027 1.19380 1.04245 1.63498 1.19171 0.90804 0.96370 1.32173 0.91582 1.25038 0.96142 0.99778 0.98476 1.70030 1.06172 1.31355 1.46630 0.86300 0.78689 0.84343 0.77514 1.21431 1.21691 1.20401 1.20842 0.96910 0.87289 0.91717 0.91511 0.92089 0.96517 0.84960 0.91524 0.93374 0.84860 0.85091 0.82620 0.89036 0.95794 0.93514 0.95424 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.50 60.06 0.63 1.03 16 2 N -0.69 -10.36 6.67 -113.88 -0.76 -11.12 16 3 C 0.07 1.24 2.64 -67.59 -0.18 1.06 16 4 H 0.04 0.78 7.80 -51.93 -0.41 0.37 16 5 C -0.10 -1.74 4.37 -26.69 -0.12 -1.85 16 6 C -0.05 -0.92 2.72 -91.65 -0.25 -1.17 16 7 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 8 C -0.13 -2.29 5.10 -36.00 -0.18 -2.47 16 9 C -0.16 -2.61 10.01 -41.21 -0.41 -3.02 16 10 C -0.13 -1.82 10.18 -41.21 -0.42 -2.24 16 11 C -0.24 -3.33 11.23 29.04 0.33 -3.01 16 12 S 0.11 1.71 22.81 -107.50 -2.45 -0.75 16 13 C 0.18 4.31 4.55 -3.71 -0.02 4.29 16 14 N -0.59 -14.76 2.99 -172.32 -0.52 -15.27 16 15 C -0.26 -6.99 9.58 -15.06 -0.14 -7.14 16 16 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 17 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 18 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 19 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.16 3.44 5.99 -3.71 -0.02 3.41 16 24 H 0.07 0.94 7.57 -51.93 -0.39 0.55 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.21 8.06 -51.93 -0.42 -0.21 16 27 H 0.33 4.36 8.42 -39.29 -0.33 4.03 16 28 H 0.07 1.19 8.05 -51.92 -0.42 0.77 16 29 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 34 H 0.02 0.61 7.83 -51.93 -0.41 0.20 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 1.11 7.41 -51.93 -0.38 0.73 16 LS Contribution 310.36 15.07 4.68 4.68 Total: -1.00 -29.06 310.36 -9.90 -38.96 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.57 Total: 3.30 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.87 Total: -11.04 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.65 Total: -51.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.45 Total: -0.75 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.06 -9.90 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.622 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds