Wall clock time and date at job start Mon Mar 30 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48502 * 109.46777 * 239.99872 * 3 2 1 5 5 H 1.48495 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46892 * 120.00406 * 3 2 1 7 7 C 1.38815 * 119.99456 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99449 * 163.07942 * 7 2 1 9 9 N 1.36930 * 120.00237 * 343.08145 * 7 2 1 10 10 C 1.46925 * 120.63183 * 331.82488 * 9 7 2 11 11 C 1.53193 * 108.77864 * 233.61126 * 10 9 7 12 12 H 1.08999 * 109.49937 * 65.31487 * 11 10 9 13 13 N 1.46903 * 109.52557 * 185.39771 * 11 10 9 14 14 C 1.53045 * 109.30845 * 305.36474 * 11 10 9 15 15 C 1.53035 * 109.53891 * 61.36612 * 14 11 10 16 16 H 1.08990 * 109.50329 * 58.61560 * 15 14 11 17 17 C 1.52998 * 109.49771 * 178.68285 * 15 14 11 18 18 C 1.50700 * 109.47524 * 184.99945 * 17 15 14 19 19 C 1.33386 * 125.20593 * 89.99594 * 18 17 15 20 20 C 1.38416 * 114.92171 * 179.97438 * 19 18 17 21 21 C 1.33395 * 114.92443 * 0.24923 * 20 19 18 22 22 S 1.75884 * 125.20069 * 269.96125 * 18 17 15 23 23 C 1.46925 * 120.63063 * 151.82451 * 9 7 2 24 24 H 0.97003 * 119.99133 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.58661 * 113.82060 * 10 9 7 26 26 H 1.08998 * 109.58798 * 353.39503 * 10 9 7 27 27 H 1.00902 * 110.99445 * 299.85202 * 13 11 10 28 28 H 1.00897 * 110.99676 * 63.80642 * 13 11 10 29 29 H 1.09004 * 109.45938 * 301.34361 * 14 11 10 30 30 H 1.09000 * 109.44734 * 181.38179 * 14 11 10 31 31 H 1.09004 * 109.47193 * 64.99579 * 17 15 14 32 32 H 1.09000 * 109.47024 * 305.00220 * 17 15 14 33 33 H 1.07999 * 122.53790 * 359.94191 * 19 18 17 34 34 H 1.08009 * 122.54138 * 179.97438 * 20 19 18 35 35 H 1.07997 * 125.20271 * 179.75539 * 21 20 19 36 36 H 1.09000 * 109.58883 * 6.60620 * 23 9 7 37 37 H 1.09000 * 109.59044 * 246.17545 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3625 0.3440 10 6 0.2262 -2.3411 1.2660 11 6 0.4978 -3.3210 2.4117 12 1 1.3476 -2.9698 2.9971 13 7 -0.6884 -3.4094 3.2738 14 6 0.8124 -4.7022 1.8325 15 6 2.0676 -4.6180 0.9611 16 1 2.9027 -4.2552 1.5601 17 6 2.4000 -6.0057 0.4090 18 6 3.7023 -5.9468 -0.3471 19 6 4.9091 -6.1512 0.1829 20 6 5.9630 -6.0454 -0.7082 21 6 5.6124 -5.7501 -1.9610 22 16 3.8631 -5.5991 -2.0637 23 6 1.8137 -3.6527 -0.2012 24 1 -0.4849 0.8401 0.0004 25 1 -0.6770 -2.6413 0.7348 26 1 0.0993 -1.3357 1.6675 27 1 -0.9164 -2.5091 3.6685 28 1 -1.4739 -3.7927 2.7698 29 1 -0.0279 -5.0420 1.2270 30 1 0.9819 -5.4071 2.6464 31 1 1.6045 -6.3299 -0.2620 32 1 2.4903 -6.7127 1.2337 33 1 5.0531 -6.3811 1.2282 34 1 6.9917 -6.1867 -0.4109 35 1 6.2978 -5.6250 -2.7862 36 1 2.7343 -3.5128 -0.7677 37 1 1.0400 -4.0600 -0.8520 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108229673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:42 Heat of formation + Delta-G solvation = 41.943194 kcal Electronic energy + Delta-G solvation = -18421.569540 eV Core-core repulsion = 15711.323092 eV Total energy + Delta-G solvation = -2710.246448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -38.51278 -37.36854 -33.98449 -33.74288 -31.00627 -29.45070 -27.36277 -25.70428 -25.30111 -23.02750 -21.68536 -20.61475 -19.34773 -18.72286 -16.90292 -16.64415 -15.34692 -15.24297 -14.91423 -14.40760 -13.96398 -13.45384 -13.11850 -13.09819 -12.81356 -12.72037 -12.32747 -12.19363 -11.78389 -11.53204 -11.25577 -11.01001 -10.74368 -10.59952 -10.45507 -10.34709 -10.21296 -9.94366 -9.82340 -9.58424 -8.49337 -8.39162 -8.23438 -8.15813 -6.65178 -5.79743 -3.22675 1.20417 1.84816 2.22585 2.92685 3.37607 3.42881 3.44791 4.48146 4.87254 5.11193 5.19514 5.28979 5.39052 5.45518 5.57264 5.68457 5.72750 5.78862 5.87755 6.06325 6.07396 6.20841 6.33361 6.39048 6.39311 6.47583 6.63277 6.66879 6.78970 6.89755 6.99991 7.24877 7.51145 7.73202 7.78220 7.97681 8.43622 9.19816 9.83290 10.39925 11.27914 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.006904 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.685334 B = 4054.526481 C = 5267.633149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.587 5.587 10 C 0.145 3.855 11 C 0.061 3.939 12 H 0.071 0.929 13 N -0.846 5.846 14 C -0.093 4.093 15 C -0.099 4.099 16 H 0.071 0.929 17 C -0.044 4.044 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.132 4.132 21 C -0.229 4.229 22 S 0.106 5.894 23 C 0.150 3.850 24 H 0.253 0.747 25 H 0.013 0.987 26 H 0.085 0.915 27 H 0.337 0.663 28 H 0.331 0.669 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.058 0.942 37 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -12.329 0.328 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.018 3.982 11 C -0.052 4.052 12 H 0.090 0.910 13 N -0.374 5.374 14 C -0.132 4.132 15 C -0.120 4.120 16 H 0.089 0.911 17 C -0.084 4.084 18 C -0.270 4.270 19 C -0.182 4.182 20 C -0.163 4.163 21 C -0.364 4.364 22 S 0.370 5.630 23 C 0.023 3.977 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.103 0.897 27 H 0.149 0.851 28 H 0.142 0.858 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.077 0.923 37 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 4.991 -12.344 -0.431 13.322 hybrid contribution 1.069 1.355 0.333 1.758 sum 6.059 -10.989 -0.098 12.549 Atomic orbital electron populations 1.70028 1.05261 1.25531 1.54126 1.25035 0.95287 0.98388 1.00956 0.86376 0.78948 0.83324 0.78212 1.20817 1.21625 1.21013 1.19160 0.92569 0.84759 1.41496 0.91720 1.43933 1.35560 1.01558 1.49910 1.21573 0.89030 0.98768 0.88866 1.22192 0.92777 0.95937 0.94275 0.91028 1.59138 1.08219 1.30854 1.39149 1.21414 0.96940 0.96950 0.97852 1.21689 0.97963 0.93643 0.98751 0.91056 1.20251 0.91334 0.98581 0.98216 1.24573 0.99366 1.06418 0.96634 1.20049 0.91228 1.05965 1.01001 1.20094 1.00182 1.03391 0.92643 1.25574 0.98487 1.10903 1.01466 1.84460 1.02170 1.69279 1.07128 1.21040 0.97681 0.86586 0.92363 0.93666 0.96853 0.89674 0.85139 0.85761 0.92959 0.92783 0.91016 0.90380 0.84662 0.84845 0.82393 0.92337 0.96817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 11.20 55.49 0.62 -25.64 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.76 2.99 -172.32 -0.52 -15.27 16 10 C 0.15 3.42 4.88 -3.71 -0.02 3.40 16 11 C 0.06 1.17 3.40 -67.59 -0.23 0.94 16 12 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 13 N -0.85 -13.99 9.26 -4.56 -0.04 -14.04 16 14 C -0.09 -1.59 4.71 -26.69 -0.13 -1.71 16 15 C -0.10 -1.71 2.33 -90.50 -0.21 -1.92 16 16 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 17 C -0.04 -0.62 5.19 -27.88 -0.14 -0.77 16 18 C -0.15 -2.20 5.10 -36.00 -0.18 -2.38 16 19 C -0.15 -2.05 10.05 -41.21 -0.41 -2.46 16 20 C -0.13 -1.65 10.18 -41.21 -0.42 -2.07 16 21 C -0.23 -2.89 11.23 29.04 0.33 -2.57 16 22 S 0.11 1.51 22.07 -107.50 -2.37 -0.87 16 23 C 0.15 3.17 5.36 -3.71 -0.02 3.15 16 24 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 27 H 0.34 5.38 9.04 -39.29 -0.36 5.03 16 28 H 0.33 5.11 8.98 -39.29 -0.35 4.76 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.06 1.26 6.39 -51.93 -0.33 0.93 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -29.53 309.31 -9.90 -39.43 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.55 Total: 8.37 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.67 Total: -13.51 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.06 Total: -54.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.37 Total: -0.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.53 -9.90 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.373 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds