Wall clock time and date at job start Mon Mar 30 2020 05:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48502 * 109.46777 * 239.99872 * 3 2 1 5 5 H 1.48495 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46892 * 120.00406 * 3 2 1 7 7 C 1.38815 * 119.99456 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99449 * 163.07942 * 7 2 1 9 9 N 1.36930 * 120.00237 * 343.08145 * 7 2 1 10 10 C 1.46925 * 120.63183 * 331.82488 * 9 7 2 11 11 C 1.53193 * 108.77864 * 233.61126 * 10 9 7 12 12 H 1.08999 * 109.49937 * 65.31487 * 11 10 9 13 13 N 1.46903 * 109.52557 * 185.39771 * 11 10 9 14 14 C 1.53045 * 109.30845 * 305.36474 * 11 10 9 15 15 C 1.53035 * 109.53891 * 61.36612 * 14 11 10 16 16 H 1.08990 * 109.50329 * 58.61560 * 15 14 11 17 17 C 1.52998 * 109.49771 * 178.68285 * 15 14 11 18 18 C 1.50700 * 109.47524 * 184.99945 * 17 15 14 19 19 C 1.33386 * 125.20593 * 89.99594 * 18 17 15 20 20 C 1.38416 * 114.92171 * 179.97438 * 19 18 17 21 21 C 1.33395 * 114.92443 * 0.24923 * 20 19 18 22 22 S 1.75884 * 125.20069 * 269.96125 * 18 17 15 23 23 C 1.46925 * 120.63063 * 151.82451 * 9 7 2 24 24 H 0.97003 * 119.99133 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.58661 * 113.82060 * 10 9 7 26 26 H 1.08998 * 109.58798 * 353.39503 * 10 9 7 27 27 H 1.00902 * 110.99445 * 299.85202 * 13 11 10 28 28 H 1.00897 * 110.99676 * 63.80642 * 13 11 10 29 29 H 1.09004 * 109.45938 * 301.34361 * 14 11 10 30 30 H 1.09000 * 109.44734 * 181.38179 * 14 11 10 31 31 H 1.09004 * 109.47193 * 64.99579 * 17 15 14 32 32 H 1.09000 * 109.47024 * 305.00220 * 17 15 14 33 33 H 1.07999 * 122.53790 * 359.94191 * 19 18 17 34 34 H 1.08009 * 122.54138 * 179.97438 * 20 19 18 35 35 H 1.07997 * 125.20271 * 179.75539 * 21 20 19 36 36 H 1.09000 * 109.58883 * 6.60620 * 23 9 7 37 37 H 1.09000 * 109.59044 * 246.17545 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3625 0.3440 10 6 0.2262 -2.3411 1.2660 11 6 0.4978 -3.3210 2.4117 12 1 1.3476 -2.9698 2.9971 13 7 -0.6884 -3.4094 3.2738 14 6 0.8124 -4.7022 1.8325 15 6 2.0676 -4.6180 0.9611 16 1 2.9027 -4.2552 1.5601 17 6 2.4000 -6.0057 0.4090 18 6 3.7023 -5.9468 -0.3471 19 6 4.9091 -6.1512 0.1829 20 6 5.9630 -6.0454 -0.7082 21 6 5.6124 -5.7501 -1.9610 22 16 3.8631 -5.5991 -2.0637 23 6 1.8137 -3.6527 -0.2012 24 1 -0.4849 0.8401 0.0004 25 1 -0.6770 -2.6413 0.7348 26 1 0.0993 -1.3357 1.6675 27 1 -0.9164 -2.5091 3.6685 28 1 -1.4739 -3.7927 2.7698 29 1 -0.0279 -5.0420 1.2270 30 1 0.9819 -5.4071 2.6464 31 1 1.6045 -6.3299 -0.2620 32 1 2.4903 -6.7127 1.2337 33 1 5.0531 -6.3811 1.2282 34 1 6.9917 -6.1867 -0.4109 35 1 6.2978 -5.6250 -2.7862 36 1 2.7343 -3.5128 -0.7677 37 1 1.0400 -4.0600 -0.8520 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108229673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:41 Heat of formation + Delta-G solvation = 23.754088 kcal Electronic energy + Delta-G solvation = -18422.358279 eV Core-core repulsion = 15711.323092 eV Total energy + Delta-G solvation = -2711.035187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98284 -38.54520 -35.65149 -35.30162 -32.84711 -30.80060 -28.88984 -27.29713 -26.94063 -24.15844 -23.51711 -22.03128 -20.86136 -19.85172 -18.71856 -17.93344 -17.00121 -16.63222 -16.26301 -15.98841 -15.61522 -15.02138 -14.96869 -14.39714 -14.05783 -13.95241 -13.86784 -13.38273 -13.13018 -13.01528 -12.87298 -12.71971 -12.50385 -12.30220 -12.03646 -11.98073 -11.58649 -11.54145 -11.36809 -11.28250 -10.57553 -9.72264 -9.45326 -9.29351 -8.66472 -7.90147 -5.36924 0.17833 0.81439 1.20972 1.42649 1.44713 1.51672 1.93557 2.47282 3.22148 3.50252 3.72644 3.98081 4.07368 4.11996 4.28870 4.34818 4.39526 4.56864 4.58649 4.74194 4.77257 4.85891 4.90261 4.98392 5.03482 5.21094 5.27049 5.30551 5.39061 5.47590 5.50870 5.59523 5.66241 5.72256 6.22874 6.35829 6.62620 7.11093 7.82389 8.33583 9.13891 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.006904 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.685334 B = 4054.526481 C = 5267.633149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.060 0.940 9 N -0.607 5.607 10 C 0.155 3.845 11 C 0.075 3.925 12 H 0.058 0.942 13 N -0.834 5.834 14 C -0.087 4.087 15 C -0.085 4.085 16 H 0.061 0.939 17 C -0.035 4.035 18 C -0.171 4.171 19 C -0.151 4.151 20 C -0.138 4.138 21 C -0.224 4.224 22 S 0.058 5.942 23 C 0.152 3.848 24 H 0.250 0.750 25 H -0.009 1.009 26 H 0.051 0.949 27 H 0.341 0.659 28 H 0.341 0.659 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.050 0.950 37 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 -13.685 1.270 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.393 4.393 8 H 0.078 0.922 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.038 4.038 12 H 0.077 0.923 13 N -0.361 5.361 14 C -0.125 4.125 15 C -0.107 4.107 16 H 0.079 0.921 17 C -0.074 4.074 18 C -0.288 4.288 19 C -0.181 4.181 20 C -0.168 4.168 21 C -0.359 4.359 22 S 0.321 5.679 23 C 0.026 3.974 24 H 0.059 0.941 25 H 0.009 0.991 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.172 0.828 34 H 0.179 0.821 35 H 0.198 0.802 36 H 0.068 0.932 37 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 6.383 -13.733 0.518 15.153 hybrid contribution 0.671 1.753 0.004 1.877 sum 7.054 -11.980 0.522 13.912 Atomic orbital electron populations 1.70176 1.06546 1.25864 1.55373 1.25761 0.96065 1.01355 1.01212 0.85395 0.77704 0.79367 0.78363 1.20188 1.21722 1.20418 1.19425 0.92657 0.86158 1.41076 0.92180 1.44222 1.35761 1.02306 1.50701 1.21446 0.87890 0.98162 0.89738 1.21914 0.93310 0.96097 0.92494 0.92344 1.59131 1.07895 1.31027 1.38071 1.21374 0.96799 0.95786 0.98504 1.21480 0.97757 0.94524 0.96897 0.92087 1.20164 0.91467 0.96737 0.99059 1.24640 0.99940 1.08000 0.96268 1.20399 0.91017 1.04570 1.02063 1.20446 1.01387 1.02709 0.92301 1.25881 0.97285 1.10269 1.02512 1.84620 1.04593 1.70277 1.08372 1.21118 0.96680 0.85809 0.93783 0.94107 0.99082 0.93093 0.84756 0.84734 0.92602 0.90088 0.90749 0.87615 0.82816 0.82119 0.80203 0.93183 0.97763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 11.20 21.65 0.24 -55.45 16 2 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 3 Si 0.96 45.64 29.59 68.60 2.03 47.67 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.26 -14.88 9.58 84.04 0.81 -14.07 16 8 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 9 N -0.61 -31.14 2.99 -699.10 -2.09 -33.23 16 10 C 0.16 7.48 4.88 86.36 0.42 7.90 16 11 C 0.07 2.82 3.40 44.99 0.15 2.97 16 12 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 13 N -0.83 -26.45 9.26 -168.34 -1.56 -28.00 16 14 C -0.09 -2.77 4.71 30.62 0.14 -2.62 16 15 C -0.09 -2.84 2.33 -10.72 -0.02 -2.86 16 16 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 17 C -0.03 -0.90 5.19 29.85 0.15 -0.75 16 18 C -0.17 -4.65 5.10 24.59 0.13 -4.53 16 19 C -0.15 -3.64 10.05 21.21 0.21 -3.43 16 20 C -0.14 -3.07 10.18 21.22 0.22 -2.85 16 21 C -0.22 -5.25 11.23 66.72 0.75 -4.50 16 22 S 0.06 1.63 22.07 -56.49 -1.25 0.38 16 23 C 0.15 6.47 5.36 86.37 0.46 6.93 16 24 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 26 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 27 H 0.34 10.61 9.04 -89.69 -0.81 9.80 16 28 H 0.34 9.99 8.98 -89.70 -0.81 9.19 16 29 H 0.06 1.76 8.14 -2.38 -0.02 1.75 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.18 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.05 2.19 6.39 -2.39 -0.02 2.18 16 37 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -64.43 309.31 0.67 -63.76 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.55 Total: 25.02 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 3.84 Total: -20.15 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -3.41 Total: -116.69 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.25 Total: 0.38 kcal Total: -64.43 0.67 -63.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.516 kcal (2) G-P(sol) polarization free energy of solvation -64.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds