Wall clock time and date at job start Mon Mar 30 2020 05:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48503 * 109.46728 * 269.99747 * 3 2 1 5 5 H 1.48498 * 109.47307 * 29.99629 * 3 2 1 6 6 H 1.48499 * 109.47223 * 150.00007 * 3 2 1 7 7 C 1.38812 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00089 * 197.34914 * 7 2 1 9 9 N 1.36941 * 119.99749 * 17.35863 * 7 2 1 10 10 C 1.46917 * 120.62939 * 207.66124 * 9 7 2 11 11 C 1.53198 * 108.77771 * 233.62787 * 10 9 7 12 12 H 1.09004 * 109.52082 * 65.33081 * 11 10 9 13 13 C 1.53001 * 109.49834 * 185.41404 * 11 10 9 14 14 C 1.50703 * 109.46727 * 294.83643 * 13 11 10 15 15 C 1.33385 * 125.19818 * 89.72727 * 14 13 11 16 16 C 1.38430 * 114.91707 * 179.85174 * 15 14 13 17 17 C 1.33390 * 114.92059 * 0.42996 * 16 15 14 18 18 S 1.75879 * 109.59322 * 359.76932 * 17 16 15 19 19 C 1.53043 * 109.31160 * 305.36855 * 11 10 9 20 20 C 1.53035 * 109.53979 * 61.36140 * 19 11 10 21 21 H 1.09001 * 109.50092 * 178.65399 * 20 19 11 22 22 N 1.46901 * 109.49844 * 58.58492 * 20 19 11 23 23 C 1.46999 * 120.61594 * 27.68142 * 9 7 2 24 24 H 0.97001 * 120.00060 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.58860 * 113.84380 * 10 9 7 26 26 H 1.08998 * 109.59078 * 353.41471 * 10 9 7 27 27 H 1.08996 * 109.47362 * 54.84183 * 13 11 10 28 28 H 1.09001 * 109.46766 * 174.84454 * 13 11 10 29 29 H 1.07996 * 122.54330 * 0.02562 * 15 14 13 30 30 H 1.08002 * 122.54071 * 180.19863 * 16 15 14 31 31 H 1.07996 * 125.19966 * 179.74779 * 17 16 15 32 32 H 1.08998 * 109.45508 * 301.34359 * 19 11 10 33 33 H 1.08997 * 109.44756 * 181.37572 * 19 11 10 34 34 H 1.00904 * 111.00286 * 180.02562 * 22 20 19 35 35 H 1.00897 * 111.00166 * 304.01681 * 22 20 19 36 36 H 1.09001 * 109.62831 * 6.60313 * 23 9 7 37 37 H 1.08988 * 109.58415 * 246.15441 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2794 9 7 1.3724 -2.3612 -0.3528 10 6 1.8197 -3.6546 0.1816 11 6 2.0752 -4.6098 -0.9886 12 1 2.9091 -4.2400 -1.5852 13 6 2.4114 -6.0011 -0.4480 14 6 3.7141 -5.9450 0.3077 15 6 3.8366 -5.6857 1.6104 16 6 5.1366 -5.6904 2.0862 17 6 6.0702 -5.9448 1.1681 18 16 5.3057 -6.2043 -0.3944 19 6 0.8196 -4.6900 -1.8599 20 6 0.5013 -3.3050 -2.4276 21 1 -0.3791 -3.3674 -3.0673 22 7 1.6449 -2.8224 -3.2133 23 6 0.2274 -2.3346 -1.2743 24 1 -0.4850 0.8401 -0.0004 25 1 1.0474 -4.0691 0.8296 26 1 2.7403 -3.5171 0.7487 27 1 1.6173 -6.3328 0.2208 28 1 2.5031 -6.7011 -1.2785 29 1 2.9860 -5.4897 2.2463 30 1 5.3770 -5.4988 3.1216 31 1 7.1330 -5.9848 1.3556 32 1 -0.0194 -5.0368 -1.2567 33 1 0.9907 -5.3879 -2.6795 34 1 1.4591 -1.9085 -3.5987 35 1 2.4879 -2.8169 -2.6589 36 1 0.0976 -1.3265 -1.6680 37 1 -0.6746 -2.6414 -0.7450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108229677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:46 Heat of formation + Delta-G solvation = 43.639874 kcal Electronic energy + Delta-G solvation = -18657.863520 eV Core-core repulsion = 15947.690645 eV Total energy + Delta-G solvation = -2710.172874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.69529 -37.38177 -33.93138 -33.27601 -30.86597 -29.36996 -27.54618 -25.89986 -25.26426 -22.97314 -21.73823 -20.86757 -19.12714 -18.37839 -16.92381 -16.64669 -15.42263 -15.17458 -14.69344 -14.38968 -13.84036 -13.68255 -13.15790 -12.84993 -12.78050 -12.62127 -12.38449 -11.93637 -11.78856 -11.55258 -11.12806 -11.09321 -10.98736 -10.75806 -10.57573 -10.39002 -10.20018 -9.89840 -9.60282 -9.46946 -8.52739 -8.37463 -8.28667 -7.94095 -6.66213 -5.81473 -3.24957 1.19613 1.81848 2.18177 2.95548 3.34411 3.42184 3.43092 4.45774 4.95443 5.18767 5.25596 5.34036 5.36702 5.48693 5.56666 5.61190 5.76198 5.80844 5.95271 6.03123 6.18504 6.25772 6.34483 6.39756 6.42492 6.51405 6.66394 6.68951 6.80037 6.88873 7.00477 7.23869 7.56434 7.76033 7.99392 8.25934 8.41088 9.17662 9.81370 10.37804 11.25382 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.006601 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.011942 B = 4240.977677 C = 5050.707299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.151 3.849 11 C -0.099 4.099 12 H 0.073 0.927 13 C -0.044 4.044 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.127 4.127 17 C -0.227 4.227 18 S 0.083 5.917 19 C -0.096 4.096 20 C 0.062 3.938 21 H 0.064 0.936 22 N -0.840 5.840 23 C 0.139 3.861 24 H 0.253 0.747 25 H 0.014 0.986 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.332 0.668 35 H 0.343 0.657 36 H 0.087 0.913 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 -12.212 -0.542 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.025 3.975 11 C -0.120 4.120 12 H 0.091 0.909 13 C -0.084 4.084 14 C -0.267 4.267 15 C -0.175 4.175 16 C -0.158 4.158 17 C -0.362 4.362 18 S 0.346 5.654 19 C -0.134 4.134 20 C -0.052 4.052 21 H 0.082 0.918 22 N -0.369 5.369 23 C 0.012 3.988 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.105 0.895 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 6.886 -13.028 -2.410 14.931 hybrid contribution -0.043 2.111 2.295 3.118 sum 6.843 -10.917 -0.115 12.885 Atomic orbital electron populations 1.70047 1.05228 1.25442 1.53885 1.25031 0.95244 0.98359 1.00975 0.86320 0.79167 0.83783 0.77715 1.21445 1.21799 1.20445 1.19194 0.92671 0.84788 1.41505 0.91710 1.44039 1.35562 1.01375 1.50187 1.21003 0.97518 0.86525 0.92469 1.21687 0.98245 0.93561 0.98524 0.90912 1.20267 0.91147 0.98547 0.98466 1.24548 0.97997 1.06893 0.97252 1.20139 0.97942 1.04470 0.94946 1.20160 0.92288 1.02722 1.00601 1.25485 1.03066 1.11701 0.95942 1.84183 0.98973 1.70673 1.11604 1.21440 0.97094 0.96944 0.97890 1.22036 0.93196 0.95081 0.94847 0.91806 1.59277 1.06202 1.31559 1.39872 1.21591 0.89066 0.98928 0.89248 0.93683 0.96781 0.92566 0.90249 0.91278 0.84314 0.84679 0.82425 0.92522 0.92924 0.85770 0.84345 0.89493 0.96519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.77 9.59 -15.06 -0.14 -6.91 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.21 2.58 -172.27 -0.44 -14.66 16 10 C 0.15 3.09 5.33 -3.71 -0.02 3.07 16 11 C -0.10 -1.67 2.01 -90.50 -0.18 -1.86 16 12 H 0.07 1.33 6.49 -51.93 -0.34 1.00 16 13 C -0.04 -0.62 5.19 -27.88 -0.14 -0.77 16 14 C -0.15 -2.13 5.29 -36.00 -0.19 -2.32 16 15 C -0.15 -2.05 8.74 -41.21 -0.36 -2.41 16 16 C -0.13 -1.63 10.18 -41.21 -0.42 -2.05 16 17 C -0.23 -2.78 11.23 29.04 0.33 -2.45 16 18 S 0.08 1.08 23.33 -107.50 -2.51 -1.42 16 19 C -0.10 -1.61 4.89 -26.69 -0.13 -1.74 16 20 C 0.06 1.17 3.71 -67.59 -0.25 0.92 16 21 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 22 N -0.84 -15.61 9.22 -4.56 -0.04 -15.65 16 23 C 0.14 3.23 4.92 -3.67 -0.02 3.21 16 24 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 1.18 6.55 -51.93 -0.34 0.84 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.33 6.16 9.04 -39.29 -0.36 5.80 16 35 H 0.34 6.77 6.55 -39.29 -0.26 6.51 16 36 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 37 H 0.02 0.42 8.14 -51.94 -0.42 -0.01 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -28.31 305.21 -9.80 -38.12 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.38 Total: 11.01 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.62 Total: -13.31 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.14 Total: -55.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.42 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.31 -9.80 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.755 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds