Wall clock time and date at job start Mon Mar 30 2020 05:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48503 * 109.46728 * 269.99747 * 3 2 1 5 5 H 1.48498 * 109.47307 * 29.99629 * 3 2 1 6 6 H 1.48499 * 109.47223 * 150.00007 * 3 2 1 7 7 C 1.38812 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00089 * 197.34914 * 7 2 1 9 9 N 1.36941 * 119.99749 * 17.35863 * 7 2 1 10 10 C 1.46917 * 120.62939 * 207.66124 * 9 7 2 11 11 C 1.53198 * 108.77771 * 233.62787 * 10 9 7 12 12 H 1.09004 * 109.52082 * 65.33081 * 11 10 9 13 13 C 1.53001 * 109.49834 * 185.41404 * 11 10 9 14 14 C 1.50703 * 109.46727 * 294.83643 * 13 11 10 15 15 C 1.33385 * 125.19818 * 89.72727 * 14 13 11 16 16 C 1.38430 * 114.91707 * 179.85174 * 15 14 13 17 17 C 1.33390 * 114.92059 * 0.42996 * 16 15 14 18 18 S 1.75879 * 109.59322 * 359.76932 * 17 16 15 19 19 C 1.53043 * 109.31160 * 305.36855 * 11 10 9 20 20 C 1.53035 * 109.53979 * 61.36140 * 19 11 10 21 21 H 1.09001 * 109.50092 * 178.65399 * 20 19 11 22 22 N 1.46901 * 109.49844 * 58.58492 * 20 19 11 23 23 C 1.46999 * 120.61594 * 27.68142 * 9 7 2 24 24 H 0.97001 * 120.00060 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.58860 * 113.84380 * 10 9 7 26 26 H 1.08998 * 109.59078 * 353.41471 * 10 9 7 27 27 H 1.08996 * 109.47362 * 54.84183 * 13 11 10 28 28 H 1.09001 * 109.46766 * 174.84454 * 13 11 10 29 29 H 1.07996 * 122.54330 * 0.02562 * 15 14 13 30 30 H 1.08002 * 122.54071 * 180.19863 * 16 15 14 31 31 H 1.07996 * 125.19966 * 179.74779 * 17 16 15 32 32 H 1.08998 * 109.45508 * 301.34359 * 19 11 10 33 33 H 1.08997 * 109.44756 * 181.37572 * 19 11 10 34 34 H 1.00904 * 111.00286 * 180.02562 * 22 20 19 35 35 H 1.00897 * 111.00166 * 304.01681 * 22 20 19 36 36 H 1.09001 * 109.62831 * 6.60313 * 23 9 7 37 37 H 1.08988 * 109.58415 * 246.15441 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2794 9 7 1.3724 -2.3612 -0.3528 10 6 1.8197 -3.6546 0.1816 11 6 2.0752 -4.6098 -0.9886 12 1 2.9091 -4.2400 -1.5852 13 6 2.4114 -6.0011 -0.4480 14 6 3.7141 -5.9450 0.3077 15 6 3.8366 -5.6857 1.6104 16 6 5.1366 -5.6904 2.0862 17 6 6.0702 -5.9448 1.1681 18 16 5.3057 -6.2043 -0.3944 19 6 0.8196 -4.6900 -1.8599 20 6 0.5013 -3.3050 -2.4276 21 1 -0.3791 -3.3674 -3.0673 22 7 1.6449 -2.8224 -3.2133 23 6 0.2274 -2.3346 -1.2743 24 1 -0.4850 0.8401 -0.0004 25 1 1.0474 -4.0691 0.8296 26 1 2.7403 -3.5171 0.7487 27 1 1.6173 -6.3328 0.2208 28 1 2.5031 -6.7011 -1.2785 29 1 2.9860 -5.4897 2.2463 30 1 5.3770 -5.4988 3.1216 31 1 7.1330 -5.9848 1.3556 32 1 -0.0194 -5.0368 -1.2567 33 1 0.9907 -5.3879 -2.6795 34 1 1.4591 -1.9085 -3.5987 35 1 2.4879 -2.8169 -2.6589 36 1 0.0976 -1.3265 -1.6680 37 1 -0.6746 -2.6414 -0.7450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108229677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:45 Heat of formation + Delta-G solvation = 27.197821 kcal Electronic energy + Delta-G solvation = -18658.576500 eV Core-core repulsion = 15947.690645 eV Total energy + Delta-G solvation = -2710.885855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16300 -38.55420 -35.61829 -34.80376 -32.72866 -30.68009 -29.12181 -27.36010 -26.96633 -24.11201 -23.54659 -22.30317 -20.27771 -19.87428 -18.62772 -17.88100 -17.03991 -16.51207 -16.32486 -15.82066 -15.58496 -15.14847 -14.81770 -14.40731 -14.05962 -13.91167 -13.56922 -13.38276 -13.11628 -12.95737 -12.83658 -12.82668 -12.55044 -12.34710 -12.17550 -11.99111 -11.62709 -11.49188 -11.26607 -11.03773 -10.57616 -9.57140 -9.42871 -9.29280 -8.63272 -7.88055 -5.34575 0.17609 0.81835 1.17729 1.42759 1.44660 1.52746 1.92777 2.47693 3.23857 3.65576 3.80317 3.94401 4.07343 4.12447 4.25372 4.32477 4.52616 4.69587 4.71435 4.73582 4.77889 4.86081 4.88649 4.99536 5.08501 5.22654 5.29179 5.32661 5.43394 5.50691 5.55126 5.62084 5.68174 5.68449 6.33512 6.43434 6.67467 7.12720 7.84534 8.35717 9.15413 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.006601 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.011942 B = 4240.977677 C = 5050.707299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.961 3.039 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.256 4.256 8 H 0.061 0.939 9 N -0.603 5.603 10 C 0.154 3.846 11 C -0.083 4.083 12 H 0.062 0.938 13 C -0.037 4.037 14 C -0.170 4.170 15 C -0.155 4.155 16 C -0.142 4.142 17 C -0.222 4.222 18 S 0.086 5.914 19 C -0.091 4.091 20 C 0.070 3.930 21 H 0.077 0.923 22 N -0.828 5.828 23 C 0.148 3.852 24 H 0.249 0.751 25 H 0.008 0.992 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.153 0.847 31 H 0.184 0.816 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.331 0.669 35 H 0.337 0.663 36 H 0.054 0.946 37 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.947 -13.459 -1.026 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.790 3.210 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.386 4.386 8 H 0.078 0.922 9 N -0.326 5.326 10 C 0.029 3.971 11 C -0.104 4.104 12 H 0.080 0.920 13 C -0.076 4.076 14 C -0.287 4.287 15 C -0.185 4.185 16 C -0.173 4.173 17 C -0.357 4.357 18 S 0.349 5.651 19 C -0.129 4.129 20 C -0.044 4.044 21 H 0.095 0.905 22 N -0.356 5.356 23 C 0.020 3.980 24 H 0.058 0.942 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.154 0.846 30 H 0.171 0.829 31 H 0.201 0.799 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.073 0.927 37 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 8.277 -14.305 -2.903 16.780 hybrid contribution -0.439 2.471 2.498 3.541 sum 7.838 -11.835 -0.405 14.201 Atomic orbital electron populations 1.70192 1.06537 1.25669 1.55492 1.25695 0.95900 1.01169 1.01466 0.85363 0.78061 0.80014 0.77607 1.21068 1.22379 1.19698 1.19410 0.92631 0.86021 1.40544 0.92159 1.44240 1.35533 1.02019 1.50777 1.21067 0.96560 0.85691 0.93818 1.21448 0.97922 0.94342 0.96716 0.91968 1.20177 0.91482 0.96742 0.99223 1.24632 0.98640 1.07930 0.97517 1.20324 0.98626 1.04395 0.95162 1.20387 0.91901 1.03187 1.01790 1.25855 1.04314 1.10290 0.95216 1.84136 0.98360 1.70484 1.12098 1.21430 0.97144 0.95764 0.98598 1.21954 0.93908 0.95228 0.93298 0.90535 1.59315 1.05687 1.31492 1.39103 1.21449 0.87975 0.98329 0.90215 0.94227 0.97422 0.93466 0.89475 0.89364 0.84635 0.82943 0.79894 0.91925 0.90511 0.85863 0.84968 0.92748 0.99088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 11.19 21.65 0.24 -54.62 16 2 C -0.05 -2.59 4.91 84.86 0.42 -2.17 16 3 Si 0.96 44.90 29.59 68.60 2.03 46.93 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.26 -13.87 9.59 84.03 0.81 -13.07 16 8 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 9 N -0.60 -29.37 2.58 -698.93 -1.80 -31.17 16 10 C 0.15 6.26 5.33 86.37 0.46 6.72 16 11 C -0.08 -2.69 2.01 -10.71 -0.02 -2.71 16 12 H 0.06 2.17 6.49 -2.38 -0.02 2.16 16 13 C -0.04 -0.94 5.19 29.85 0.15 -0.79 16 14 C -0.17 -4.55 5.29 24.59 0.13 -4.42 16 15 C -0.16 -4.18 8.74 21.22 0.19 -4.00 16 16 C -0.14 -3.40 10.18 21.22 0.22 -3.18 16 17 C -0.22 -4.91 11.23 66.72 0.75 -4.16 16 18 S 0.09 2.08 23.33 -56.49 -1.32 0.76 16 19 C -0.09 -2.87 4.89 30.62 0.15 -2.72 16 20 C 0.07 2.56 3.71 44.99 0.17 2.73 16 21 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 22 N -0.83 -29.76 9.22 -168.35 -1.55 -31.31 16 23 C 0.15 6.97 4.92 86.35 0.42 7.40 16 24 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 26 H 0.05 1.98 6.55 -2.39 -0.02 1.97 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.33 12.06 9.04 -89.69 -0.81 11.25 16 35 H 0.34 12.96 6.55 -89.70 -0.59 12.37 16 36 H 0.05 2.92 6.04 -2.39 -0.01 2.90 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: -1.00 -60.68 305.21 1.12 -59.56 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.32 Total: 30.21 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 3.84 Total: -20.37 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -3.11 Total: -117.10 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.32 Total: 0.76 kcal Total: -60.68 1.12 -59.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.759 kcal (2) G-P(sol) polarization free energy of solvation -60.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds