Wall clock time and date at job start Mon Mar 30 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99900 * 2 1 4 4 H 1.48507 * 109.47194 * 239.99380 * 3 2 1 5 5 H 1.48502 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99350 * 3 2 1 7 7 C 1.38810 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00131 * 163.08114 * 7 2 1 9 9 N 1.36936 * 119.99947 * 343.08601 * 7 2 1 10 10 C 1.46921 * 120.62896 * 331.81879 * 9 7 2 11 11 C 1.53202 * 108.89095 * 233.55861 * 10 9 7 12 12 H 1.08998 * 109.49595 * 185.48215 * 11 10 9 13 13 N 1.46899 * 109.49408 * 65.39089 * 11 10 9 14 14 C 1.53075 * 109.29343 * 305.57936 * 11 10 9 15 15 C 1.53039 * 109.65859 * 61.15537 * 14 11 10 16 16 H 1.09002 * 109.49839 * 58.64825 * 15 14 11 17 17 C 1.53003 * 109.52125 * 178.73130 * 15 14 11 18 18 C 1.50704 * 109.46781 * 184.85069 * 17 15 14 19 19 C 1.33390 * 125.19934 * 89.72075 * 18 17 15 20 20 C 1.38426 * 114.92017 * 179.85618 * 19 18 17 21 21 C 1.33387 * 114.91932 * 0.43076 * 20 19 18 22 22 S 1.75877 * 125.20446 * 270.02272 * 18 17 15 23 23 C 1.46925 * 120.63144 * 151.84073 * 9 7 2 24 24 H 0.96997 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.58835 * 353.41413 * 10 9 7 26 26 H 1.09001 * 109.58940 * 113.70508 * 10 9 7 27 27 H 1.00899 * 111.00668 * 60.00010 * 13 11 10 28 28 H 1.00904 * 110.99640 * 183.95767 * 13 11 10 29 29 H 1.08998 * 109.34347 * 301.12385 * 14 11 10 30 30 H 1.09007 * 109.43640 * 181.23616 * 14 11 10 31 31 H 1.09003 * 109.46956 * 304.85007 * 17 15 14 32 32 H 1.08995 * 109.47432 * 64.85635 * 17 15 14 33 33 H 1.08003 * 122.54360 * 0.02562 * 19 18 17 34 34 H 1.08003 * 122.53847 * 180.20085 * 20 19 18 35 35 H 1.07997 * 125.20204 * 179.78662 * 21 20 19 36 36 H 1.08996 * 109.59125 * 246.15994 * 23 9 7 37 37 H 1.09006 * 109.58704 * 6.44259 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2717 9 7 1.3700 -2.3622 0.3461 10 6 0.2263 -2.3400 1.2680 11 6 0.4948 -3.3193 2.4152 12 1 -0.3872 -3.3836 3.0525 13 7 1.6385 -2.8459 3.2062 14 6 0.8133 -4.7004 1.8371 15 6 2.0684 -4.6168 0.9655 16 1 2.9034 -4.2524 1.5641 17 6 2.4020 -6.0048 0.4150 18 6 3.7025 -5.9448 -0.3442 19 6 4.9113 -6.1410 0.1845 20 6 5.9628 -6.0384 -0.7099 21 6 5.6085 -5.7501 -1.9631 22 16 3.8590 -5.5980 -2.0614 23 6 1.8141 -3.6529 -0.1977 24 1 -0.4850 0.8400 -0.0004 25 1 0.0992 -1.3342 1.6684 26 1 -0.6773 -2.6387 0.7366 27 1 1.4558 -1.9335 3.5962 28 1 1.8761 -3.5076 3.9300 29 1 -0.0270 -5.0411 1.2322 30 1 0.9832 -5.4043 2.6519 31 1 2.4955 -6.7103 1.2406 32 1 1.6057 -6.3315 -0.2538 33 1 5.0583 -6.3656 1.2307 34 1 6.9923 -6.1775 -0.4145 35 1 6.2915 -5.6288 -2.7909 36 1 1.0406 -4.0611 -0.8481 37 1 2.7334 -3.5129 -0.7665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108229679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:49 Heat of formation + Delta-G solvation = 49.109446 kcal Electronic energy + Delta-G solvation = -18605.542547 eV Core-core repulsion = 15895.606851 eV Total energy + Delta-G solvation = -2709.935696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.43995 -37.29814 -33.79913 -33.41449 -30.80943 -29.29740 -27.66090 -25.64907 -25.19311 -22.97841 -21.66357 -20.69829 -18.96480 -18.37548 -16.88421 -16.51707 -15.25176 -14.98714 -14.69100 -14.36176 -13.96531 -13.75870 -13.12616 -12.94701 -12.66615 -12.44262 -12.27930 -11.99019 -11.73725 -11.45793 -11.12818 -10.98270 -10.69676 -10.63101 -10.46798 -10.25957 -10.00744 -9.76504 -9.61512 -9.44524 -8.36435 -8.31142 -8.14328 -7.78891 -6.48493 -5.65761 -3.04247 1.27048 1.91098 2.28725 2.99143 3.46546 3.51158 3.54266 4.61184 5.00960 5.22615 5.24863 5.41296 5.42446 5.51234 5.60168 5.70318 5.76965 5.89991 5.92301 6.02953 6.24564 6.29132 6.34597 6.41548 6.47415 6.53521 6.66612 6.74300 6.92100 6.99510 7.18222 7.33947 7.66455 7.92157 7.96465 8.18495 8.59500 9.35737 9.99991 10.57358 11.43309 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.006864 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.584764 B = 4078.005711 C = 4951.404675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.003 4.003 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.061 0.939 9 N -0.574 5.574 10 C 0.178 3.822 11 C 0.064 3.936 12 H 0.016 0.984 13 N -0.823 5.823 14 C -0.096 4.096 15 C -0.091 4.091 16 H 0.085 0.915 17 C -0.048 4.048 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.132 4.132 21 C -0.230 4.230 22 S 0.105 5.895 23 C 0.155 3.845 24 H 0.251 0.749 25 H 0.086 0.914 26 H 0.019 0.981 27 H 0.337 0.663 28 H 0.318 0.682 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.009 0.991 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -12.991 1.964 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.200 4.200 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.078 0.922 9 N -0.295 5.295 10 C 0.051 3.949 11 C -0.049 4.049 12 H 0.034 0.966 13 N -0.352 5.352 14 C -0.134 4.134 15 C -0.112 4.112 16 H 0.104 0.896 17 C -0.088 4.088 18 C -0.266 4.266 19 C -0.183 4.183 20 C -0.163 4.163 21 C -0.366 4.366 22 S 0.369 5.631 23 C 0.028 3.972 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.037 0.963 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.026 0.974 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.010 -12.538 0.050 13.502 hybrid contribution 0.836 0.623 1.971 2.230 sum 5.846 -11.915 2.020 13.424 Atomic orbital electron populations 1.70012 1.05146 1.25201 1.55286 1.24937 0.95204 0.98090 1.01763 0.86414 0.78882 0.83696 0.78073 1.21101 1.21905 1.21196 1.19081 0.92293 0.84849 1.39652 0.92172 1.43677 1.35349 1.01246 1.49203 1.20770 0.88731 0.97841 0.87542 1.22121 0.89949 0.96413 0.96372 0.96647 1.58532 1.41923 1.05996 1.28794 1.21461 0.97802 0.96063 0.98087 1.21585 0.98383 0.92639 0.98593 0.89641 1.20331 0.91268 0.99211 0.97985 1.24567 0.99364 1.06116 0.96562 1.20027 0.91229 1.06180 1.00891 1.20083 1.00148 1.03425 0.92604 1.25556 0.98501 1.11086 1.01439 1.84445 1.02183 1.69304 1.07179 1.20955 0.97273 0.86728 0.92244 0.93910 0.89567 0.96343 0.85065 0.87088 0.92606 0.93967 0.90778 0.91325 0.84760 0.84927 0.82461 0.97366 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.76 11.20 55.49 0.62 -26.14 16 2 C 0.00 -0.08 4.92 -17.43 -0.09 -0.17 16 3 Si 0.90 22.35 29.59 -169.99 -5.03 17.32 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.43 9.58 -15.06 -0.14 -6.58 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.57 -14.56 2.92 -172.32 -0.50 -15.06 16 10 C 0.18 4.26 4.90 -3.71 -0.02 4.24 16 11 C 0.06 1.21 3.61 -67.57 -0.24 0.97 16 12 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 13 N -0.82 -14.73 8.34 -4.55 -0.04 -14.76 16 14 C -0.10 -1.61 4.82 -26.67 -0.13 -1.74 16 15 C -0.09 -1.61 2.18 -90.50 -0.20 -1.81 16 16 H 0.09 1.68 7.54 -51.93 -0.39 1.29 16 17 C -0.05 -0.70 5.19 -27.88 -0.14 -0.84 16 18 C -0.15 -2.21 5.10 -36.00 -0.18 -2.40 16 19 C -0.15 -2.14 10.05 -41.21 -0.41 -2.55 16 20 C -0.13 -1.70 10.18 -41.21 -0.42 -2.12 16 21 C -0.23 -3.02 11.23 29.04 0.33 -2.69 16 22 S 0.11 1.55 22.06 -107.50 -2.37 -0.83 16 23 C 0.15 3.36 5.36 -3.71 -0.02 3.34 16 24 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.34 6.05 9.04 -39.29 -0.36 5.70 16 28 H 0.32 4.75 9.00 -39.29 -0.35 4.40 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.06 1.24 6.38 -51.93 -0.33 0.91 16 LS Contribution 307.90 15.07 4.64 4.64 Total: -1.00 -30.19 307.90 -9.88 -40.07 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.52 Total: 7.12 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.67 Total: -12.35 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.08 Total: -55.97 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.37 Total: -0.83 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.19 -9.88 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.178 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds