Wall clock time and date at job start Mon Mar 30 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99900 * 2 1 4 4 H 1.48507 * 109.47194 * 239.99380 * 3 2 1 5 5 H 1.48502 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99350 * 3 2 1 7 7 C 1.38810 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00131 * 163.08114 * 7 2 1 9 9 N 1.36936 * 119.99947 * 343.08601 * 7 2 1 10 10 C 1.46921 * 120.62896 * 331.81879 * 9 7 2 11 11 C 1.53202 * 108.89095 * 233.55861 * 10 9 7 12 12 H 1.08998 * 109.49595 * 185.48215 * 11 10 9 13 13 N 1.46899 * 109.49408 * 65.39089 * 11 10 9 14 14 C 1.53075 * 109.29343 * 305.57936 * 11 10 9 15 15 C 1.53039 * 109.65859 * 61.15537 * 14 11 10 16 16 H 1.09002 * 109.49839 * 58.64825 * 15 14 11 17 17 C 1.53003 * 109.52125 * 178.73130 * 15 14 11 18 18 C 1.50704 * 109.46781 * 184.85069 * 17 15 14 19 19 C 1.33390 * 125.19934 * 89.72075 * 18 17 15 20 20 C 1.38426 * 114.92017 * 179.85618 * 19 18 17 21 21 C 1.33387 * 114.91932 * 0.43076 * 20 19 18 22 22 S 1.75877 * 125.20446 * 270.02272 * 18 17 15 23 23 C 1.46925 * 120.63144 * 151.84073 * 9 7 2 24 24 H 0.96997 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.58835 * 353.41413 * 10 9 7 26 26 H 1.09001 * 109.58940 * 113.70508 * 10 9 7 27 27 H 1.00899 * 111.00668 * 60.00010 * 13 11 10 28 28 H 1.00904 * 110.99640 * 183.95767 * 13 11 10 29 29 H 1.08998 * 109.34347 * 301.12385 * 14 11 10 30 30 H 1.09007 * 109.43640 * 181.23616 * 14 11 10 31 31 H 1.09003 * 109.46956 * 304.85007 * 17 15 14 32 32 H 1.08995 * 109.47432 * 64.85635 * 17 15 14 33 33 H 1.08003 * 122.54360 * 0.02562 * 19 18 17 34 34 H 1.08003 * 122.53847 * 180.20085 * 20 19 18 35 35 H 1.07997 * 125.20204 * 179.78662 * 21 20 19 36 36 H 1.08996 * 109.59125 * 246.15994 * 23 9 7 37 37 H 1.09006 * 109.58704 * 6.44259 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2717 9 7 1.3700 -2.3622 0.3461 10 6 0.2263 -2.3400 1.2680 11 6 0.4948 -3.3193 2.4152 12 1 -0.3872 -3.3836 3.0525 13 7 1.6385 -2.8459 3.2062 14 6 0.8133 -4.7004 1.8371 15 6 2.0684 -4.6168 0.9655 16 1 2.9034 -4.2524 1.5641 17 6 2.4020 -6.0048 0.4150 18 6 3.7025 -5.9448 -0.3442 19 6 4.9113 -6.1410 0.1845 20 6 5.9628 -6.0384 -0.7099 21 6 5.6085 -5.7501 -1.9631 22 16 3.8590 -5.5980 -2.0614 23 6 1.8141 -3.6529 -0.1977 24 1 -0.4850 0.8400 -0.0004 25 1 0.0992 -1.3342 1.6684 26 1 -0.6773 -2.6387 0.7366 27 1 1.4558 -1.9335 3.5962 28 1 1.8761 -3.5076 3.9300 29 1 -0.0270 -5.0411 1.2322 30 1 0.9832 -5.4043 2.6519 31 1 2.4955 -6.7103 1.2406 32 1 1.6057 -6.3315 -0.2538 33 1 5.0583 -6.3656 1.2307 34 1 6.9923 -6.1775 -0.4145 35 1 6.2915 -5.6288 -2.7909 36 1 1.0406 -4.0611 -0.8481 37 1 2.7334 -3.5129 -0.7665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108229679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:49 Heat of formation + Delta-G solvation = 30.376392 kcal Electronic energy + Delta-G solvation = -18606.354873 eV Core-core repulsion = 15895.606851 eV Total energy + Delta-G solvation = -2710.748022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91023 -38.49861 -35.55043 -34.92324 -32.70156 -30.66057 -29.23177 -27.19238 -26.89641 -24.14804 -23.52371 -22.12858 -20.26467 -19.76567 -18.62758 -17.86037 -16.83630 -16.39844 -16.25805 -15.98100 -15.55194 -15.38306 -14.57693 -14.46088 -13.94142 -13.89213 -13.61115 -13.42785 -13.09505 -12.99723 -12.79103 -12.54369 -12.48213 -12.32261 -12.16233 -11.82470 -11.53422 -11.42144 -11.26312 -11.13477 -10.47817 -9.42585 -9.27214 -9.21026 -8.54000 -7.79846 -5.21435 0.20974 0.84185 1.23551 1.46426 1.48390 1.55509 1.96430 2.55562 3.33098 3.70472 3.84314 3.94494 4.13190 4.15942 4.30918 4.34342 4.52830 4.64357 4.71636 4.77885 4.82793 4.90489 4.96914 5.02717 5.05498 5.28247 5.31153 5.36353 5.45160 5.51931 5.62170 5.70980 5.73233 5.81823 6.42133 6.53624 6.89420 7.23610 7.96821 8.48125 9.25780 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.006864 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.584764 B = 4078.005711 C = 4951.404675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.051 4.051 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.051 0.949 9 N -0.590 5.590 10 C 0.183 3.817 11 C 0.074 3.926 12 H 0.033 0.967 13 N -0.831 5.831 14 C -0.093 4.093 15 C -0.075 4.075 16 H 0.071 0.929 17 C -0.039 4.039 18 C -0.167 4.167 19 C -0.152 4.152 20 C -0.138 4.138 21 C -0.226 4.226 22 S 0.055 5.945 23 C 0.155 3.845 24 H 0.247 0.753 25 H 0.053 0.947 26 H -0.008 1.008 27 H 0.335 0.665 28 H 0.340 0.660 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.180 0.820 36 H -0.003 1.003 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 -14.489 3.278 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.246 4.246 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.069 0.931 9 N -0.311 5.311 10 C 0.056 3.944 11 C -0.039 4.039 12 H 0.050 0.950 13 N -0.362 5.362 14 C -0.131 4.131 15 C -0.095 4.095 16 H 0.089 0.911 17 C -0.079 4.079 18 C -0.284 4.284 19 C -0.182 4.182 20 C -0.168 4.168 21 C -0.361 4.361 22 S 0.319 5.681 23 C 0.029 3.971 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.171 0.829 34 H 0.178 0.822 35 H 0.197 0.803 36 H 0.015 0.985 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.589 -14.076 1.378 15.603 hybrid contribution 0.401 1.061 1.517 1.895 sum 6.990 -13.015 2.895 15.054 Atomic orbital electron populations 1.70164 1.06388 1.25461 1.56574 1.25603 0.95930 1.00891 1.02144 0.85451 0.77624 0.79921 0.78114 1.20690 1.22019 1.20627 1.19269 0.92097 0.86285 1.39214 0.93094 1.43900 1.35467 1.01806 1.49971 1.20597 0.87475 0.97498 0.88786 1.21869 0.91182 0.96021 0.94838 0.94955 1.58427 1.41451 1.06568 1.29730 1.21463 0.97259 0.95345 0.99012 1.21323 0.98290 0.93323 0.96603 0.91075 1.20247 0.91300 0.97492 0.98861 1.24653 1.00010 1.07638 0.96144 1.20377 0.91005 1.04814 1.01965 1.20441 1.01382 1.02713 0.92254 1.25862 0.97265 1.10485 1.02514 1.84617 1.04660 1.70330 1.08537 1.21046 0.96066 0.86207 0.93767 0.94397 0.92898 0.98980 0.85320 0.84664 0.92488 0.90185 0.87827 0.91159 0.82879 0.82163 0.80270 0.98477 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.79 11.20 21.65 0.24 -56.55 16 2 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 3 Si 0.96 46.69 29.59 68.60 2.03 48.72 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.24 -13.67 9.58 84.03 0.81 -12.86 16 8 H 0.05 2.96 7.89 -2.91 -0.02 2.94 16 9 N -0.59 -30.52 2.92 -699.09 -2.04 -32.56 16 10 C 0.18 8.94 4.90 86.37 0.42 9.36 16 11 C 0.07 2.68 3.61 45.01 0.16 2.85 16 12 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 13 N -0.83 -28.29 8.34 -168.29 -1.40 -29.69 16 14 C -0.09 -2.88 4.82 30.63 0.15 -2.73 16 15 C -0.07 -2.52 2.18 -10.71 -0.02 -2.54 16 16 H 0.07 2.64 7.54 -2.39 -0.02 2.62 16 17 C -0.04 -1.05 5.19 29.85 0.15 -0.90 16 18 C -0.17 -4.69 5.10 24.59 0.13 -4.57 16 19 C -0.15 -3.80 10.05 21.22 0.21 -3.59 16 20 C -0.14 -3.18 10.18 21.22 0.22 -2.96 16 21 C -0.23 -5.51 11.23 66.72 0.75 -4.76 16 22 S 0.06 1.61 22.06 -56.49 -1.25 0.36 16 23 C 0.15 6.78 5.36 86.36 0.46 7.25 16 24 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 25 H 0.05 2.92 6.06 -2.39 -0.01 2.91 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.33 11.72 9.04 -89.69 -0.81 10.91 16 28 H 0.34 9.11 9.00 -89.69 -0.81 8.30 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.04 1.98 6.38 -2.38 -0.02 1.96 16 Total: -1.00 -66.45 307.90 0.89 -65.56 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.54 Total: 22.17 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.85 Total: -18.00 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -3.20 Total: -118.80 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.25 Total: 0.36 kcal Total: -66.45 0.89 -65.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.935 kcal (2) G-P(sol) polarization free energy of solvation -66.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds