Wall clock time and date at job start Mon Mar 30 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47508 * 240.00343 * 3 2 1 5 5 H 1.48502 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46705 * 120.00218 * 3 2 1 7 7 C 1.38807 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99905 * 162.76319 * 7 2 1 9 9 N 1.36934 * 120.00300 * 343.03779 * 7 2 1 10 10 C 1.46928 * 120.63411 * 151.76472 * 9 7 2 11 11 C 1.53629 * 108.54140 * 126.36820 * 10 9 7 12 12 H 1.09003 * 109.63416 * 294.86740 * 11 10 9 13 13 N 1.46901 * 109.42649 * 174.72820 * 11 10 9 14 14 C 1.53041 * 109.24068 * 54.85852 * 11 10 9 15 15 C 1.53035 * 109.53808 * 298.50898 * 14 11 10 16 16 H 1.09000 * 109.50015 * 301.41249 * 15 14 11 17 17 C 1.52999 * 109.49805 * 181.31807 * 15 14 11 18 18 C 1.50706 * 109.47301 * 175.16050 * 17 15 14 19 19 C 1.33391 * 125.20005 * 90.00296 * 18 17 15 20 20 C 1.38417 * 114.91817 * 179.97438 * 19 18 17 21 21 C 1.33393 * 114.92455 * 359.97438 * 20 19 18 22 22 S 1.75881 * 125.20336 * 269.69239 * 18 17 15 23 23 C 1.46923 * 120.62828 * 332.04478 * 9 7 2 24 24 H 0.96997 * 119.99932 * 359.97438 * 1 2 3 25 25 H 1.08987 * 109.58580 * 246.20290 * 10 9 7 26 26 H 1.08996 * 109.58113 * 6.63234 * 10 9 7 27 27 H 1.00899 * 111.00234 * 60.29071 * 13 11 10 28 28 H 1.00901 * 110.99407 * 184.24848 * 13 11 10 29 29 H 1.09002 * 109.45604 * 178.48986 * 14 11 10 30 30 H 1.09004 * 109.44859 * 58.52190 * 14 11 10 31 31 H 1.09002 * 109.46794 * 295.16146 * 17 15 14 32 32 H 1.09002 * 109.47330 * 55.16081 * 17 15 14 33 33 H 1.07996 * 122.53749 * 359.94869 * 19 18 17 34 34 H 1.07999 * 122.54062 * 180.02562 * 20 19 18 35 35 H 1.07997 * 125.20607 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.58936 * 353.37128 * 23 9 7 37 37 H 1.09003 * 109.58932 * 113.65651 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2777 9 7 1.3703 -2.3624 0.3449 10 6 1.8129 -3.6526 -0.2011 11 6 2.0681 -4.6161 0.9680 12 1 2.9013 -4.2509 1.5685 13 7 2.3897 -5.9492 0.4412 14 6 0.8106 -4.6996 1.8363 15 6 0.4935 -3.3176 2.4121 16 1 1.3415 -2.9647 2.9990 17 6 -0.7446 -3.4088 3.3063 18 6 -0.9867 -2.0758 3.9665 19 6 -1.7381 -1.0945 3.4648 20 6 -1.8151 0.0416 4.2517 21 6 -1.1266 -0.0172 5.3928 22 16 -0.3281 -1.5792 5.5198 23 6 0.2241 -2.3400 1.2638 24 1 -0.4850 0.8400 0.0004 25 1 1.0383 -4.0594 -0.8510 26 1 2.7329 -3.5129 -0.7686 27 1 3.2169 -5.9201 -0.1358 28 1 2.4940 -6.6181 1.1894 29 1 0.9787 -5.4030 2.6519 30 1 -0.0277 -5.0412 1.2291 31 1 -1.6107 -3.6773 2.7014 32 1 -0.5855 -4.1693 4.0708 33 1 -2.2474 -1.1798 2.5163 34 1 -2.3897 0.9097 3.9642 35 1 -1.0713 0.7719 6.1280 36 1 0.0954 -1.3340 1.6631 37 1 -0.6780 -2.6396 0.7302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108229681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:52 Heat of formation + Delta-G solvation = 26.403503 kcal Electronic energy + Delta-G solvation = -18687.293922 eV Core-core repulsion = 15976.373623 eV Total energy + Delta-G solvation = -2710.920299 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.96101 -38.49459 -35.70399 -35.14312 -32.85133 -30.86772 -28.81920 -27.40347 -26.97072 -24.07494 -23.54470 -21.86415 -20.66930 -20.02778 -18.60837 -17.84842 -16.92958 -16.52551 -16.27161 -15.93125 -15.83302 -15.36849 -14.69422 -14.39711 -14.04384 -13.94563 -13.88347 -13.37659 -13.13591 -12.95191 -12.89702 -12.65411 -12.51647 -12.22918 -12.14328 -11.93785 -11.69781 -11.49945 -11.31284 -11.13598 -10.50639 -9.56269 -9.41279 -9.27116 -8.66082 -7.85378 -5.30763 0.17174 0.81519 1.14103 1.43598 1.46117 1.52109 1.94374 2.49535 3.27896 3.45980 3.77775 3.99747 4.04398 4.10251 4.27168 4.35775 4.40175 4.54040 4.64679 4.75743 4.80529 4.84146 4.88449 4.97757 5.11505 5.19152 5.26992 5.30186 5.41156 5.51541 5.57971 5.68612 5.69218 5.86002 6.27294 6.43383 6.71758 7.17223 7.87939 8.39654 9.19586 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.009789 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.879022 B = 2859.566498 C = 4590.571260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.039 4.039 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.272 4.272 8 H 0.060 0.940 9 N -0.609 5.609 10 C 0.152 3.848 11 C 0.086 3.914 12 H 0.023 0.977 13 N -0.843 5.843 14 C -0.089 4.089 15 C -0.095 4.095 16 H 0.050 0.950 17 C -0.033 4.033 18 C -0.171 4.171 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.221 4.221 22 S 0.091 5.909 23 C 0.187 3.813 24 H 0.250 0.750 25 H 0.012 0.988 26 H 0.044 0.956 27 H 0.346 0.654 28 H 0.350 0.650 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.186 0.814 36 H 0.069 0.931 37 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.680 -6.721 10.765 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.235 4.235 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.402 4.402 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.026 3.974 11 C -0.026 4.026 12 H 0.041 0.959 13 N -0.374 5.374 14 C -0.127 4.127 15 C -0.116 4.116 16 H 0.069 0.931 17 C -0.073 4.073 18 C -0.288 4.288 19 C -0.175 4.175 20 C -0.173 4.173 21 C -0.356 4.356 22 S 0.353 5.647 23 C 0.061 3.939 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.159 0.841 28 H 0.164 0.836 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.204 0.796 36 H 0.088 0.912 37 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -0.562 -7.196 11.458 13.542 hybrid contribution 0.253 2.039 -1.043 2.304 sum -0.309 -5.157 10.415 11.626 Atomic orbital electron populations 1.70156 1.06232 1.25706 1.54400 1.25657 0.96020 1.00885 1.00976 0.85512 0.77847 0.79969 0.78177 1.20190 1.21726 1.20778 1.19382 0.92716 0.86144 1.41936 0.92201 1.44274 1.36095 1.01933 1.50961 1.21001 0.96905 0.85831 0.93673 1.21666 0.96347 0.89211 0.95413 0.95882 1.58598 1.44660 1.07191 1.26995 1.21399 0.97188 0.95668 0.98470 1.21630 0.96646 0.96606 0.96748 0.93143 1.20144 0.98360 0.91135 0.97660 1.24600 1.03443 1.01715 0.99082 1.20220 1.02487 0.93859 1.00973 1.20330 1.02566 0.99612 0.94777 1.25811 1.04719 1.01620 1.03416 1.83798 1.52083 1.10538 1.18269 1.20700 0.86795 0.98411 0.87956 0.94120 0.97049 0.93723 0.84102 0.83645 0.90436 0.92358 0.90103 0.88897 0.85858 0.83604 0.79641 0.91233 0.99408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 11.18 21.65 0.24 -53.92 16 2 C -0.04 -2.19 4.92 84.86 0.42 -1.77 16 3 Si 0.96 45.61 29.59 68.60 2.03 47.64 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.27 -15.35 9.58 84.03 0.81 -14.54 16 8 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 9 N -0.61 -31.51 2.99 -698.27 -2.09 -33.59 16 10 C 0.15 6.66 6.13 86.51 0.53 7.19 16 11 C 0.09 2.97 3.41 45.14 0.15 3.12 16 12 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 13 N -0.84 -22.54 9.25 -167.74 -1.55 -24.09 16 14 C -0.09 -2.90 4.71 30.62 0.14 -2.75 16 15 C -0.10 -3.55 2.33 -10.72 -0.02 -3.57 16 16 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 17 C -0.03 -1.04 5.19 29.85 0.15 -0.88 16 18 C -0.17 -5.74 5.27 24.59 0.13 -5.61 16 19 C -0.15 -5.23 8.76 21.22 0.19 -5.05 16 20 C -0.14 -4.54 10.18 21.22 0.22 -4.32 16 21 C -0.22 -6.19 11.23 66.72 0.75 -5.44 16 22 S 0.09 2.61 23.33 -56.49 -1.32 1.29 16 23 C 0.19 9.04 4.11 86.36 0.36 9.39 16 24 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.04 1.93 7.93 -2.39 -0.02 1.91 16 27 H 0.35 8.34 9.04 -89.69 -0.81 7.53 16 28 H 0.35 7.44 8.99 -89.69 -0.81 6.63 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16 35 H 0.19 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.07 3.76 4.67 -2.39 -0.01 3.75 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 Total: -1.00 -64.20 309.61 0.59 -63.62 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.55 Total: 23.30 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 3.82 Total: -24.24 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -3.40 Total: -111.61 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.32 Total: 1.29 kcal Total: -64.20 0.59 -63.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.021 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds