Wall clock time and date at job start Mon Mar 30 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48498 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46899 * 299.99616 * 3 2 1 6 6 H 1.48501 * 109.47319 * 59.99563 * 3 2 1 7 7 C 1.38807 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99882 * 163.07338 * 7 2 1 9 9 N 1.36939 * 120.00023 * 343.06335 * 7 2 1 10 10 C 1.46933 * 120.60302 * 151.86966 * 9 7 2 11 11 C 1.53183 * 108.77368 * 126.42388 * 10 9 7 12 12 H 1.09001 * 109.50244 * 294.62202 * 11 10 9 13 13 C 1.53000 * 109.49993 * 174.55389 * 11 10 9 14 14 C 1.50700 * 109.47301 * 65.06395 * 13 11 10 15 15 C 1.38428 * 122.53585 * 90.00168 * 14 13 11 16 16 C 1.33390 * 114.91552 * 179.97438 * 15 14 13 17 17 S 1.75875 * 109.59702 * 359.97438 * 16 15 14 18 18 C 1.33389 * 122.53909 * 269.98231 * 14 13 11 19 19 C 1.53047 * 109.33890 * 54.58713 * 11 10 9 20 20 C 1.53041 * 109.53441 * 298.65362 * 19 11 10 21 21 H 1.08997 * 109.49738 * 301.40700 * 20 19 11 22 22 N 1.46904 * 109.49247 * 181.34890 * 20 19 11 23 23 C 1.46920 * 120.63446 * 331.85170 * 9 7 2 24 24 H 0.97007 * 119.99592 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.61528 * 6.62204 * 10 9 7 26 26 H 1.09003 * 109.56092 * 246.19848 * 10 9 7 27 27 H 1.09009 * 109.47101 * 305.06673 * 13 11 10 28 28 H 1.09002 * 109.47436 * 185.06790 * 13 11 10 29 29 H 1.07995 * 122.53637 * 359.71119 * 15 14 13 30 30 H 1.08000 * 125.19853 * 179.97438 * 16 15 14 31 31 H 1.07995 * 125.20439 * 359.97438 * 18 14 13 32 32 H 1.08999 * 109.45603 * 58.66995 * 19 11 10 33 33 H 1.08995 * 109.46135 * 178.64068 * 19 11 10 34 34 H 1.00903 * 110.99627 * 179.97438 * 22 20 19 35 35 H 1.00898 * 111.00051 * 303.94951 * 22 20 19 36 36 H 1.09000 * 109.58972 * 113.81403 * 23 9 7 37 37 H 1.09001 * 109.70397 * 353.45966 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2226 -0.2718 9 7 1.3700 -2.3622 0.3465 10 6 1.8147 -3.6528 -0.1970 11 6 2.0678 -4.6167 0.9662 12 1 2.9029 -4.2531 1.5651 13 6 2.4005 -6.0051 0.4159 14 6 3.7020 -5.9466 -0.3415 15 6 4.9268 -6.1670 0.2647 16 6 5.9804 -6.0784 -0.5486 17 16 5.4377 -5.6981 -2.1777 18 6 3.7610 -5.6790 -1.6470 19 6 0.8125 -4.7001 1.8377 20 6 0.4977 -3.3182 2.4152 21 1 1.3474 -2.9662 3.0002 22 7 -0.6885 -3.4057 3.2773 23 6 0.2261 -2.3397 1.2683 24 1 -0.4850 0.8401 -0.0004 25 1 2.7357 -3.5135 -0.7632 26 1 1.0414 -4.0606 -0.8480 27 1 1.6046 -6.3307 -0.2540 28 1 2.4920 -6.7109 1.2415 29 1 5.0223 -6.3893 1.3172 30 1 7.0093 -6.2189 -0.2519 31 1 2.9094 -5.4821 -2.2812 32 1 -0.0276 -5.0407 1.2326 33 1 0.9821 -5.4039 2.6525 34 1 -0.9165 -2.5051 3.6712 35 1 -1.4740 -3.7898 2.7737 36 1 -0.6770 -2.6406 0.7373 37 1 0.0965 -1.3343 1.6688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108229693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:47 Heat of formation + Delta-G solvation = 42.011296 kcal Electronic energy + Delta-G solvation = -18465.111520 eV Core-core repulsion = 15754.868025 eV Total energy + Delta-G solvation = -2710.243495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.87701 -37.32847 -33.73806 -33.42840 -30.77642 -29.43867 -27.41342 -26.32323 -25.26337 -22.89216 -21.63163 -20.62372 -19.14843 -18.49541 -17.24768 -16.67013 -15.48872 -15.05532 -14.90623 -14.25358 -13.86982 -13.45001 -13.11861 -13.04876 -12.85676 -12.73064 -12.37233 -12.14195 -11.72340 -11.53581 -11.26229 -11.01738 -10.78216 -10.64375 -10.47272 -10.31824 -10.16396 -9.93011 -9.75213 -9.54279 -8.59264 -8.49406 -8.17524 -8.15029 -6.64665 -5.79924 -3.22716 1.19341 1.84100 2.16026 2.90188 3.35465 3.43670 3.46397 4.48139 4.96739 5.07131 5.23959 5.32432 5.42013 5.50684 5.57293 5.71285 5.72272 5.84961 5.90008 6.07527 6.14124 6.19184 6.29509 6.41093 6.42986 6.59306 6.64127 6.71993 6.83175 6.93371 7.02959 7.26038 7.52134 7.74250 7.78620 7.98632 8.43647 9.19933 9.83728 10.40162 11.27631 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.006670 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.502424 B = 4197.075816 C = 5510.435543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.153 3.847 11 C -0.097 4.097 12 H 0.068 0.932 13 C -0.053 4.053 14 C -0.092 4.092 15 C -0.125 4.125 16 C -0.217 4.217 17 S 0.074 5.926 18 C -0.202 4.202 19 C -0.093 4.093 20 C 0.061 3.939 21 H 0.071 0.929 22 N -0.847 5.847 23 C 0.146 3.854 24 H 0.252 0.748 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.137 0.863 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.337 0.663 35 H 0.331 0.669 36 H 0.013 0.987 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 -12.520 0.480 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.027 3.973 11 C -0.118 4.118 12 H 0.087 0.913 13 C -0.094 4.094 14 C -0.103 4.103 15 C -0.156 4.156 16 C -0.353 4.353 17 S 0.337 5.663 18 C -0.337 4.337 19 C -0.132 4.132 20 C -0.052 4.052 21 H 0.089 0.911 22 N -0.374 5.374 23 C 0.018 3.982 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.155 0.845 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.031 0.969 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.081 -12.629 -0.494 14.487 hybrid contribution -0.723 1.473 0.585 1.742 sum 6.358 -11.156 0.091 12.841 Atomic orbital electron populations 1.70046 1.05270 1.25284 1.54358 1.25032 0.95283 0.98398 1.01045 0.86249 0.79485 0.83989 0.77277 1.20189 1.21717 1.21568 1.19244 0.92593 0.84806 1.41150 0.91667 1.43965 1.35541 1.01628 1.49991 1.20986 0.97402 0.86407 0.92499 1.21615 0.97650 0.93997 0.98559 0.91330 1.20382 0.92534 0.97957 0.98479 1.18966 0.96287 1.01799 0.93290 1.20104 0.91357 1.03213 1.00920 1.25494 1.02791 1.10570 0.96402 1.84161 1.00998 1.70400 1.10756 1.25476 0.99195 1.09932 0.99098 1.21421 0.97093 0.96781 0.97868 1.22194 0.92717 0.96044 0.94238 0.91089 1.59137 1.08239 1.30774 1.39236 1.21555 0.89023 0.98747 0.88875 0.93789 0.92572 0.96900 0.91285 0.91405 0.84510 0.82295 0.81909 0.93029 0.92881 0.85178 0.85772 0.96914 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 11.19 55.49 0.62 -25.66 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.80 7.89 -52.48 -0.41 1.39 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.25 16 10 C 0.15 3.20 5.26 -3.71 -0.02 3.18 16 11 C -0.10 -1.67 2.33 -90.50 -0.21 -1.88 16 12 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.05 -0.74 4.96 -27.88 -0.14 -0.88 16 14 C -0.09 -1.29 4.63 -106.25 -0.49 -1.78 16 15 C -0.13 -1.62 9.98 -41.21 -0.41 -2.03 16 16 C -0.22 -2.63 11.23 29.04 0.33 -2.30 16 17 S 0.07 0.93 23.34 -107.50 -2.51 -1.58 16 18 C -0.20 -2.83 9.52 29.04 0.28 -2.55 16 19 C -0.09 -1.59 4.71 -26.69 -0.13 -1.71 16 20 C 0.06 1.16 3.40 -67.59 -0.23 0.93 16 21 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 22 N -0.85 -14.06 9.26 -4.57 -0.04 -14.10 16 23 C 0.15 3.43 4.87 -3.72 -0.02 3.41 16 24 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.06 1.20 6.51 -51.93 -0.34 0.86 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.93 8.12 -51.92 -0.42 0.50 16 28 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.16 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.34 5.41 9.04 -39.29 -0.36 5.05 16 35 H 0.33 5.13 8.98 -39.29 -0.35 4.78 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 2.24 6.06 -51.93 -0.31 1.92 16 LS Contribution 309.13 15.07 4.66 4.66 Total: -1.00 -29.48 309.13 -9.65 -39.13 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.56 Total: 8.62 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.27 Total: -12.68 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.06 Total: -55.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.58 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.48 -9.65 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.142 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds