Wall clock time and date at job start Mon Mar 30 2020 05:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48498 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46899 * 299.99616 * 3 2 1 6 6 H 1.48501 * 109.47319 * 59.99563 * 3 2 1 7 7 C 1.38807 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99882 * 163.07338 * 7 2 1 9 9 N 1.36939 * 120.00023 * 343.06335 * 7 2 1 10 10 C 1.46933 * 120.60302 * 151.86966 * 9 7 2 11 11 C 1.53183 * 108.77368 * 126.42388 * 10 9 7 12 12 H 1.09001 * 109.50244 * 294.62202 * 11 10 9 13 13 C 1.53000 * 109.49993 * 174.55389 * 11 10 9 14 14 C 1.50700 * 109.47301 * 65.06395 * 13 11 10 15 15 C 1.38428 * 122.53585 * 90.00168 * 14 13 11 16 16 C 1.33390 * 114.91552 * 179.97438 * 15 14 13 17 17 S 1.75875 * 109.59702 * 359.97438 * 16 15 14 18 18 C 1.33389 * 122.53909 * 269.98231 * 14 13 11 19 19 C 1.53047 * 109.33890 * 54.58713 * 11 10 9 20 20 C 1.53041 * 109.53441 * 298.65362 * 19 11 10 21 21 H 1.08997 * 109.49738 * 301.40700 * 20 19 11 22 22 N 1.46904 * 109.49247 * 181.34890 * 20 19 11 23 23 C 1.46920 * 120.63446 * 331.85170 * 9 7 2 24 24 H 0.97007 * 119.99592 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.61528 * 6.62204 * 10 9 7 26 26 H 1.09003 * 109.56092 * 246.19848 * 10 9 7 27 27 H 1.09009 * 109.47101 * 305.06673 * 13 11 10 28 28 H 1.09002 * 109.47436 * 185.06790 * 13 11 10 29 29 H 1.07995 * 122.53637 * 359.71119 * 15 14 13 30 30 H 1.08000 * 125.19853 * 179.97438 * 16 15 14 31 31 H 1.07995 * 125.20439 * 359.97438 * 18 14 13 32 32 H 1.08999 * 109.45603 * 58.66995 * 19 11 10 33 33 H 1.08995 * 109.46135 * 178.64068 * 19 11 10 34 34 H 1.00903 * 110.99627 * 179.97438 * 22 20 19 35 35 H 1.00898 * 111.00051 * 303.94951 * 22 20 19 36 36 H 1.09000 * 109.58972 * 113.81403 * 23 9 7 37 37 H 1.09001 * 109.70397 * 353.45966 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2226 -0.2718 9 7 1.3700 -2.3622 0.3465 10 6 1.8147 -3.6528 -0.1970 11 6 2.0678 -4.6167 0.9662 12 1 2.9029 -4.2531 1.5651 13 6 2.4005 -6.0051 0.4159 14 6 3.7020 -5.9466 -0.3415 15 6 4.9268 -6.1670 0.2647 16 6 5.9804 -6.0784 -0.5486 17 16 5.4377 -5.6981 -2.1777 18 6 3.7610 -5.6790 -1.6470 19 6 0.8125 -4.7001 1.8377 20 6 0.4977 -3.3182 2.4152 21 1 1.3474 -2.9662 3.0002 22 7 -0.6885 -3.4057 3.2773 23 6 0.2261 -2.3397 1.2683 24 1 -0.4850 0.8401 -0.0004 25 1 2.7357 -3.5135 -0.7632 26 1 1.0414 -4.0606 -0.8480 27 1 1.6046 -6.3307 -0.2540 28 1 2.4920 -6.7109 1.2415 29 1 5.0223 -6.3893 1.3172 30 1 7.0093 -6.2189 -0.2519 31 1 2.9094 -5.4821 -2.2812 32 1 -0.0276 -5.0407 1.2326 33 1 0.9821 -5.4039 2.6525 34 1 -0.9165 -2.5051 3.6712 35 1 -1.4740 -3.7898 2.7737 36 1 -0.6770 -2.6406 0.7373 37 1 0.0965 -1.3343 1.6688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108229693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:46 Heat of formation + Delta-G solvation = 23.821157 kcal Electronic energy + Delta-G solvation = -18465.900304 eV Core-core repulsion = 15754.868025 eV Total energy + Delta-G solvation = -2711.032278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.21733 -38.67027 -35.57933 -34.84258 -32.64730 -30.62461 -28.88752 -27.72934 -27.18510 -24.06238 -23.39856 -22.05653 -20.75226 -19.52827 -18.68907 -18.26372 -17.02674 -16.69274 -16.24034 -15.86423 -15.46046 -14.99996 -14.92618 -14.34904 -14.05182 -13.94151 -13.80877 -13.51153 -13.10646 -12.92141 -12.83722 -12.78046 -12.49363 -12.26665 -12.00379 -11.99018 -11.71850 -11.50507 -11.26395 -11.20878 -10.58408 -9.71360 -9.59751 -9.18654 -8.65627 -7.90143 -5.36656 0.19042 0.85655 1.16684 1.40996 1.43265 1.53792 1.87932 2.47016 3.22185 3.54115 3.80312 4.01406 4.11068 4.15324 4.25883 4.38582 4.44807 4.62095 4.63068 4.73017 4.80003 4.86423 4.89682 5.04713 5.06882 5.21482 5.23997 5.34996 5.37667 5.51956 5.60317 5.62505 5.69865 5.73046 6.23711 6.36270 6.63240 7.11449 7.83405 8.34081 9.13949 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.006670 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.502424 B = 4197.075816 C = 5510.435543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.259 4.259 8 H 0.060 0.940 9 N -0.608 5.608 10 C 0.155 3.845 11 C -0.083 4.083 12 H 0.057 0.943 13 C -0.044 4.044 14 C -0.100 4.100 15 C -0.140 4.140 16 C -0.212 4.212 17 S 0.075 5.925 18 C -0.224 4.224 19 C -0.087 4.087 20 C 0.075 3.925 21 H 0.057 0.943 22 N -0.834 5.834 23 C 0.156 3.844 24 H 0.249 0.751 25 H 0.047 0.953 26 H 0.008 0.992 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.186 0.814 31 H 0.160 0.840 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.340 0.660 35 H 0.341 0.659 36 H -0.009 1.009 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 -13.897 1.390 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.390 4.390 8 H 0.078 0.922 9 N -0.331 5.331 10 C 0.030 3.970 11 C -0.104 4.104 12 H 0.076 0.924 13 C -0.084 4.084 14 C -0.113 4.113 15 C -0.170 4.170 16 C -0.347 4.347 17 S 0.339 5.661 18 C -0.359 4.359 19 C -0.125 4.125 20 C -0.038 4.038 21 H 0.075 0.925 22 N -0.362 5.362 23 C 0.028 3.972 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.173 0.827 30 H 0.203 0.797 31 H 0.177 0.823 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.009 0.991 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.184 -14.038 0.419 16.255 hybrid contribution -1.056 1.885 0.254 2.176 sum 7.128 -12.153 0.673 14.105 Atomic orbital electron populations 1.70185 1.06544 1.25676 1.55631 1.25746 0.96055 1.01329 1.01367 0.85278 0.78653 0.80079 0.76929 1.19297 1.21798 1.21447 1.19491 0.92631 0.86211 1.40646 0.92194 1.44253 1.35714 1.02397 1.50771 1.21075 0.96488 0.85559 0.93918 1.21407 0.97364 0.94881 0.96732 0.92449 1.20304 0.92755 0.96046 0.99344 1.19123 0.96878 1.01959 0.93312 1.20326 0.91008 1.03661 1.01993 1.25870 1.04020 1.09200 0.95624 1.84141 1.00190 1.70256 1.11558 1.25614 0.99997 1.10744 0.99579 1.21380 0.97014 0.95558 0.98511 1.21921 0.93223 0.96237 0.92469 0.92451 1.59130 1.07931 1.30943 1.38182 1.21423 0.87922 0.98080 0.89750 0.94157 0.93494 0.97426 0.90747 0.88889 0.82711 0.79686 0.82262 0.92605 0.90328 0.84813 0.84735 0.99085 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 11.19 21.65 0.24 -55.42 16 2 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 3 Si 0.96 45.65 29.59 68.60 2.03 47.68 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.26 -14.62 9.58 84.03 0.81 -13.81 16 8 H 0.06 3.37 7.89 -2.91 -0.02 3.34 16 9 N -0.61 -30.95 2.99 -699.11 -2.09 -33.04 16 10 C 0.15 6.47 5.26 86.36 0.45 6.93 16 11 C -0.08 -2.72 2.33 -10.72 -0.02 -2.74 16 12 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 13 C -0.04 -1.12 4.96 29.85 0.15 -0.97 16 14 C -0.10 -2.65 4.63 -20.92 -0.10 -2.74 16 15 C -0.14 -3.27 9.98 21.22 0.21 -3.06 16 16 C -0.21 -4.62 11.23 66.72 0.75 -3.87 16 17 S 0.08 1.81 23.34 -56.49 -1.32 0.49 16 18 C -0.22 -6.11 9.52 66.72 0.63 -5.47 16 19 C -0.09 -2.75 4.71 30.62 0.14 -2.61 16 20 C 0.07 2.80 3.40 44.99 0.15 2.96 16 21 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 22 N -0.83 -26.52 9.26 -168.36 -1.56 -28.08 16 23 C 0.16 7.48 4.87 86.36 0.42 7.90 16 24 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 25 H 0.05 2.02 6.51 -2.39 -0.02 2.00 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.07 1.82 8.12 -2.38 -0.02 1.80 16 28 H 0.09 1.94 8.13 -2.39 -0.02 1.92 16 29 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.34 10.64 9.04 -89.69 -0.81 9.83 16 35 H 0.34 10.00 8.98 -89.70 -0.81 9.19 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.05 2.71 6.06 -2.39 -0.01 2.69 16 Total: -1.00 -63.80 309.13 0.77 -63.02 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.55 Total: 25.23 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 4.02 Total: -19.89 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -3.41 Total: -116.53 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.32 Total: 0.49 kcal Total: -63.80 0.77 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.846 kcal (2) G-P(sol) polarization free energy of solvation -63.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds