Wall clock time and date at job start Mon Mar 30 2020 05:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99542 * 2 1 4 4 H 1.48504 * 109.46870 * 274.05866 * 3 2 1 5 5 H 1.48496 * 109.47350 * 34.06334 * 3 2 1 6 6 H 1.48496 * 109.46696 * 154.06207 * 3 2 1 7 7 C 1.38807 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99816 * 197.52544 * 7 2 1 9 9 N 1.36935 * 120.00101 * 17.52334 * 7 2 1 10 10 C 1.46919 * 120.62865 * 28.02816 * 9 7 2 11 11 C 1.53194 * 108.77029 * 126.35542 * 10 9 7 12 12 H 1.08994 * 109.48965 * 174.59293 * 11 10 9 13 13 N 1.46891 * 109.50928 * 294.69927 * 11 10 9 14 14 C 1.53048 * 109.30700 * 54.65094 * 11 10 9 15 15 C 1.53038 * 109.52901 * 298.61451 * 14 11 10 16 16 H 1.08996 * 109.49788 * 301.42531 * 15 14 11 17 17 C 1.52999 * 109.49709 * 181.32338 * 15 14 11 18 18 C 1.50702 * 109.47019 * 175.00309 * 17 15 14 19 19 C 1.38423 * 122.53755 * 90.00355 * 18 17 15 20 20 C 1.33391 * 114.91601 * 179.97438 * 19 18 17 21 21 S 1.75886 * 109.59535 * 0.02562 * 20 19 18 22 22 C 1.33387 * 122.53686 * 269.70994 * 18 17 15 23 23 C 1.46921 * 120.63117 * 207.99432 * 9 7 2 24 24 H 0.96999 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.58648 * 246.15265 * 10 9 7 26 26 H 1.08993 * 109.59066 * 6.43180 * 10 9 7 27 27 H 1.00902 * 111.00310 * 299.83936 * 13 11 10 28 28 H 1.00901 * 111.00514 * 63.79533 * 13 11 10 29 29 H 1.09009 * 109.45742 * 178.59884 * 14 11 10 30 30 H 1.09000 * 109.45765 * 58.63535 * 14 11 10 31 31 H 1.09001 * 109.47354 * 295.00408 * 17 15 14 32 32 H 1.08998 * 109.47055 * 55.00120 * 17 15 14 33 33 H 1.07993 * 122.54227 * 359.95584 * 19 18 17 34 34 H 1.08001 * 125.20093 * 180.02562 * 20 19 18 35 35 H 1.08005 * 125.20191 * 0.02596 * 22 18 17 36 36 H 1.08999 * 109.58608 * 113.84497 * 23 9 7 37 37 H 1.08998 * 109.70670 * 353.49466 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4118 2.0961 -1.3966 5 1 1.4932 2.6264 0.7842 6 1 3.5880 1.4170 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0528 -1.2237 0.2822 9 7 1.3733 -2.3607 -0.3560 10 6 0.2360 -2.3339 -1.2857 11 6 0.5169 -3.3056 -2.4363 12 1 -0.3589 -3.3674 -3.0821 13 7 1.6673 -2.8260 -3.2136 14 6 0.8286 -4.6906 -1.8643 15 6 2.0777 -4.6111 -0.9836 16 1 2.9164 -4.2428 -1.5743 17 6 2.4077 -6.0022 -0.4388 18 6 3.7046 -5.9472 0.3268 19 6 3.7575 -5.6764 1.6832 20 6 4.9844 -5.6655 2.2066 21 16 6.1651 -6.0112 0.9496 22 6 4.8879 -6.1613 -0.2503 23 6 1.8147 -3.6541 0.1833 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6706 -2.6387 -0.7628 26 1 0.1093 -1.3254 -1.6792 27 1 1.4859 -1.9126 -3.6019 28 1 2.5059 -2.8203 -2.6525 29 1 1.0044 -5.3899 -2.6818 30 1 -0.0156 -5.0351 -1.2670 31 1 1.6079 -6.3318 0.2245 32 1 2.5044 -6.7034 -1.2676 33 1 2.8727 -5.4878 2.2729 34 1 5.2171 -5.4738 3.2437 35 1 5.0389 -6.3896 -1.2951 36 1 1.0369 -4.0665 0.8260 37 1 2.7305 -3.5192 0.7586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108229698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:51 Heat of formation + Delta-G solvation = 44.031417 kcal Electronic energy + Delta-G solvation = -18706.175007 eV Core-core repulsion = 15996.019111 eV Total energy + Delta-G solvation = -2710.155896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.97605 -37.40885 -33.63424 -32.91318 -30.77812 -29.37260 -27.76879 -26.06158 -25.30599 -23.11180 -21.68044 -20.79742 -18.55796 -18.42096 -17.42100 -16.67430 -15.33409 -15.09114 -14.59219 -14.40340 -13.83096 -13.50819 -13.15296 -12.89072 -12.79057 -12.63966 -12.45975 -11.85544 -11.72587 -11.60365 -11.12544 -11.10188 -10.97757 -10.76551 -10.57003 -10.37566 -10.17862 -9.86961 -9.56883 -9.44490 -8.60200 -8.51611 -8.14614 -7.93713 -6.65004 -5.81241 -3.24802 1.19459 1.83880 2.14913 2.92594 3.34226 3.42265 3.43338 4.46148 5.04034 5.16642 5.29370 5.39558 5.43984 5.49759 5.52372 5.64098 5.75040 5.79461 5.99950 6.07851 6.24226 6.24979 6.30811 6.41130 6.42047 6.61655 6.68511 6.71733 6.83486 6.91594 7.04351 7.24950 7.56767 7.76403 7.99991 8.26324 8.41767 9.18203 9.82004 10.38721 11.25576 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.006516 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.191267 B = 4295.813367 C = 5196.486561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.139 3.861 11 C 0.062 3.938 12 H 0.063 0.937 13 N -0.840 5.840 14 C -0.096 4.096 15 C -0.098 4.098 16 H 0.071 0.929 17 C -0.055 4.055 18 C -0.084 4.084 19 C -0.121 4.121 20 C -0.212 4.212 21 S 0.065 5.935 22 C -0.214 4.214 23 C 0.152 3.848 24 H 0.253 0.747 25 H 0.016 0.984 26 H 0.086 0.914 27 H 0.331 0.669 28 H 0.343 0.657 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.014 0.986 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -12.245 -0.289 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.012 3.988 11 C -0.052 4.052 12 H 0.081 0.919 13 N -0.369 5.369 14 C -0.134 4.134 15 C -0.118 4.118 16 H 0.090 0.910 17 C -0.095 4.095 18 C -0.096 4.096 19 C -0.151 4.151 20 C -0.347 4.347 21 S 0.328 5.672 22 C -0.349 4.349 23 C 0.025 3.975 24 H 0.063 0.937 25 H 0.034 0.966 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.157 0.843 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.158 0.842 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.031 0.969 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.908 -12.856 -0.742 15.112 hybrid contribution -1.134 1.931 0.875 2.404 sum 6.774 -10.925 0.133 12.856 Atomic orbital electron populations 1.70054 1.05237 1.25417 1.53851 1.25036 0.95230 0.98367 1.00958 0.86315 0.79237 0.83875 0.77626 1.21476 1.21809 1.20394 1.19196 0.92710 0.84837 1.41436 0.91743 1.44017 1.36184 1.01448 1.49520 1.21561 0.89185 0.98853 0.89203 1.22034 0.93086 0.95197 0.94863 0.91881 1.59283 1.06250 1.31623 1.39732 1.21448 0.97289 0.96782 0.97876 1.21655 0.98079 0.93811 0.98302 0.91035 1.20412 0.92616 0.98146 0.98364 1.18997 0.95843 1.00914 0.93858 1.20182 0.97983 1.02186 0.94797 1.25517 0.95927 1.10519 1.02779 1.84087 1.11647 1.70832 1.00589 1.25364 0.94913 1.11670 1.02913 1.21001 0.97382 0.86507 0.92563 0.93701 0.96560 0.89622 0.85827 0.84347 0.92985 0.92616 0.91216 0.91511 0.84175 0.82187 0.82209 0.96855 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 11.22 55.49 0.62 -25.29 16 2 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 8 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.22 2.57 -172.33 -0.44 -14.66 16 10 C 0.14 3.24 4.92 -3.71 -0.02 3.23 16 11 C 0.06 1.17 3.71 -67.59 -0.25 0.92 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 13 N -0.84 -15.57 9.22 -4.57 -0.04 -15.61 16 14 C -0.10 -1.61 4.89 -26.69 -0.13 -1.74 16 15 C -0.10 -1.64 2.01 -90.50 -0.18 -1.82 16 16 H 0.07 1.30 6.49 -51.93 -0.34 0.96 16 17 C -0.05 -0.76 4.95 -27.88 -0.14 -0.90 16 18 C -0.08 -1.17 4.59 -106.25 -0.49 -1.66 16 19 C -0.12 -1.67 8.55 -41.21 -0.35 -2.02 16 20 C -0.21 -2.70 11.23 29.04 0.33 -2.37 16 21 S 0.07 0.80 23.34 -107.50 -2.51 -1.71 16 22 C -0.21 -2.80 10.98 29.04 0.32 -2.48 16 23 C 0.15 3.10 5.27 -3.71 -0.02 3.08 16 24 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 27 H 0.33 6.14 9.04 -39.29 -0.36 5.79 16 28 H 0.34 6.74 6.55 -39.29 -0.26 6.48 16 29 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 33 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 1.15 6.50 -51.93 -0.34 0.82 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -28.32 304.81 -9.35 -37.67 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.38 Total: 11.13 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.16 Total: -12.71 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.14 Total: -55.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.32 -9.35 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.700 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds