Wall clock time and date at job start Mon Mar 30 2020 05:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99542 * 2 1 4 4 H 1.48504 * 109.46870 * 274.05866 * 3 2 1 5 5 H 1.48496 * 109.47350 * 34.06334 * 3 2 1 6 6 H 1.48496 * 109.46696 * 154.06207 * 3 2 1 7 7 C 1.38807 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99816 * 197.52544 * 7 2 1 9 9 N 1.36935 * 120.00101 * 17.52334 * 7 2 1 10 10 C 1.46919 * 120.62865 * 28.02816 * 9 7 2 11 11 C 1.53194 * 108.77029 * 126.35542 * 10 9 7 12 12 H 1.08994 * 109.48965 * 174.59293 * 11 10 9 13 13 N 1.46891 * 109.50928 * 294.69927 * 11 10 9 14 14 C 1.53048 * 109.30700 * 54.65094 * 11 10 9 15 15 C 1.53038 * 109.52901 * 298.61451 * 14 11 10 16 16 H 1.08996 * 109.49788 * 301.42531 * 15 14 11 17 17 C 1.52999 * 109.49709 * 181.32338 * 15 14 11 18 18 C 1.50702 * 109.47019 * 175.00309 * 17 15 14 19 19 C 1.38423 * 122.53755 * 90.00355 * 18 17 15 20 20 C 1.33391 * 114.91601 * 179.97438 * 19 18 17 21 21 S 1.75886 * 109.59535 * 0.02562 * 20 19 18 22 22 C 1.33387 * 122.53686 * 269.70994 * 18 17 15 23 23 C 1.46921 * 120.63117 * 207.99432 * 9 7 2 24 24 H 0.96999 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.58648 * 246.15265 * 10 9 7 26 26 H 1.08993 * 109.59066 * 6.43180 * 10 9 7 27 27 H 1.00902 * 111.00310 * 299.83936 * 13 11 10 28 28 H 1.00901 * 111.00514 * 63.79533 * 13 11 10 29 29 H 1.09009 * 109.45742 * 178.59884 * 14 11 10 30 30 H 1.09000 * 109.45765 * 58.63535 * 14 11 10 31 31 H 1.09001 * 109.47354 * 295.00408 * 17 15 14 32 32 H 1.08998 * 109.47055 * 55.00120 * 17 15 14 33 33 H 1.07993 * 122.54227 * 359.95584 * 19 18 17 34 34 H 1.08001 * 125.20093 * 180.02562 * 20 19 18 35 35 H 1.08005 * 125.20191 * 0.02596 * 22 18 17 36 36 H 1.08999 * 109.58608 * 113.84497 * 23 9 7 37 37 H 1.08998 * 109.70670 * 353.49466 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4118 2.0961 -1.3966 5 1 1.4932 2.6264 0.7842 6 1 3.5880 1.4170 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0528 -1.2237 0.2822 9 7 1.3733 -2.3607 -0.3560 10 6 0.2360 -2.3339 -1.2857 11 6 0.5169 -3.3056 -2.4363 12 1 -0.3589 -3.3674 -3.0821 13 7 1.6673 -2.8260 -3.2136 14 6 0.8286 -4.6906 -1.8643 15 6 2.0777 -4.6111 -0.9836 16 1 2.9164 -4.2428 -1.5743 17 6 2.4077 -6.0022 -0.4388 18 6 3.7046 -5.9472 0.3268 19 6 3.7575 -5.6764 1.6832 20 6 4.9844 -5.6655 2.2066 21 16 6.1651 -6.0112 0.9496 22 6 4.8879 -6.1613 -0.2503 23 6 1.8147 -3.6541 0.1833 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6706 -2.6387 -0.7628 26 1 0.1093 -1.3254 -1.6792 27 1 1.4859 -1.9126 -3.6019 28 1 2.5059 -2.8203 -2.6525 29 1 1.0044 -5.3899 -2.6818 30 1 -0.0156 -5.0351 -1.2670 31 1 1.6079 -6.3318 0.2245 32 1 2.5044 -6.7034 -1.2676 33 1 2.8727 -5.4878 2.2729 34 1 5.2171 -5.4738 3.2437 35 1 5.0389 -6.3896 -1.2951 36 1 1.0369 -4.0665 0.8260 37 1 2.7305 -3.5192 0.7586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108229698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:50 Heat of formation + Delta-G solvation = 27.419360 kcal Electronic energy + Delta-G solvation = -18706.895359 eV Core-core repulsion = 15996.019111 eV Total energy + Delta-G solvation = -2710.876248 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33407 -38.71415 -35.46408 -34.33398 -32.62366 -30.57349 -29.29660 -27.36512 -27.23419 -24.28265 -23.48353 -22.20711 -20.03751 -19.56791 -18.71101 -18.28608 -17.02801 -16.56077 -16.01960 -15.90267 -15.56252 -15.02417 -14.76332 -14.37832 -14.02433 -13.85167 -13.73450 -13.33695 -13.10853 -12.94074 -12.82693 -12.78206 -12.52113 -12.36781 -12.18214 -11.98362 -11.67160 -11.42915 -11.21883 -10.97489 -10.57208 -9.61008 -9.55940 -9.14948 -8.62099 -7.87795 -5.34494 0.19227 0.86889 1.15686 1.42425 1.44554 1.52926 1.87884 2.47860 3.23967 3.68067 3.93864 3.97170 4.06498 4.17392 4.25338 4.36157 4.57205 4.66045 4.69079 4.77064 4.83207 4.89245 4.93489 5.05130 5.09890 5.20136 5.26689 5.35032 5.43750 5.55776 5.61637 5.64080 5.68370 5.75402 6.34232 6.44253 6.68620 7.13205 7.85357 8.36667 9.15586 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.006516 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.191267 B = 4295.813367 C = 5196.486561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.960 3.040 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.256 4.256 8 H 0.061 0.939 9 N -0.603 5.603 10 C 0.148 3.852 11 C 0.069 3.931 12 H 0.075 0.925 13 N -0.827 5.827 14 C -0.092 4.092 15 C -0.082 4.082 16 H 0.063 0.937 17 C -0.046 4.046 18 C -0.101 4.101 19 C -0.141 4.141 20 C -0.219 4.219 21 S 0.087 5.913 22 C -0.219 4.219 23 C 0.154 3.846 24 H 0.248 0.752 25 H -0.010 1.010 26 H 0.053 0.947 27 H 0.330 0.670 28 H 0.337 0.663 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.006 0.994 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -13.550 -0.986 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.789 3.211 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.078 0.922 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.044 4.044 12 H 0.093 0.907 13 N -0.355 5.355 14 C -0.130 4.130 15 C -0.102 4.102 16 H 0.081 0.919 17 C -0.086 4.086 18 C -0.113 4.113 19 C -0.171 4.171 20 C -0.354 4.354 21 S 0.350 5.650 22 C -0.354 4.354 23 C 0.029 3.971 24 H 0.058 0.942 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.155 0.845 34 H 0.195 0.805 35 H 0.194 0.806 36 H 0.024 0.976 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.265 -14.193 -1.446 17.011 hybrid contribution -1.511 2.308 1.144 2.986 sum 7.754 -11.886 -0.301 14.195 Atomic orbital electron populations 1.70199 1.06562 1.25646 1.55503 1.25703 0.95885 1.01190 1.01465 0.85355 0.78182 0.80100 0.77450 1.21142 1.22409 1.19597 1.19418 0.92678 0.86067 1.40436 0.92161 1.44224 1.36130 1.02109 1.50104 1.21422 0.88070 0.98251 0.90188 1.21950 0.93800 0.95350 0.93304 0.90678 1.59320 1.05716 1.31541 1.38936 1.21438 0.97344 0.95586 0.98584 1.21429 0.97741 0.94610 0.96465 0.91897 1.20319 0.92863 0.96323 0.99131 1.19060 0.96204 1.02042 0.93995 1.20298 0.98430 1.03258 0.95163 1.25830 0.95859 1.09727 1.03944 1.84017 1.10937 1.70075 0.99938 1.25656 0.94935 1.10888 1.03932 1.21080 0.96434 0.85671 0.93953 0.94246 0.99236 0.92908 0.85938 0.84918 0.90479 0.92206 0.90747 0.89300 0.84512 0.80473 0.80612 0.97627 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 11.22 21.65 0.24 -54.76 16 2 C -0.05 -2.60 4.90 84.86 0.42 -2.18 16 3 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.26 -13.87 9.58 84.03 0.81 -13.06 16 8 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 9 N -0.60 -29.37 2.57 -699.12 -1.80 -31.16 16 10 C 0.15 7.01 4.92 86.36 0.42 7.43 16 11 C 0.07 2.55 3.71 45.00 0.17 2.72 16 12 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 13 N -0.83 -29.50 9.22 -168.36 -1.55 -31.06 16 14 C -0.09 -2.86 4.89 30.62 0.15 -2.71 16 15 C -0.08 -2.60 2.01 -10.72 -0.02 -2.63 16 16 H 0.06 2.15 6.49 -2.39 -0.02 2.13 16 17 C -0.05 -1.16 4.95 29.85 0.15 -1.01 16 18 C -0.10 -2.63 4.59 -20.92 -0.10 -2.72 16 19 C -0.14 -3.74 8.55 21.22 0.18 -3.56 16 20 C -0.22 -5.21 11.23 66.72 0.75 -4.46 16 21 S 0.09 1.95 23.34 -56.49 -1.32 0.63 16 22 C -0.22 -5.22 10.98 66.72 0.73 -4.49 16 23 C 0.15 6.24 5.27 86.36 0.46 6.70 16 24 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 25 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 26 H 0.05 2.84 6.06 -2.39 -0.01 2.82 16 27 H 0.33 11.98 9.04 -89.69 -0.81 11.17 16 28 H 0.34 12.83 6.55 -89.69 -0.59 12.24 16 29 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 33 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 34 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 35 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.05 1.96 6.50 -2.39 -0.02 1.94 16 Total: -1.00 -60.67 304.81 1.39 -59.27 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.32 Total: 30.10 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.11 Total: -19.98 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -3.11 Total: -116.97 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.32 Total: 0.63 kcal Total: -60.67 1.39 -59.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.694 kcal (2) G-P(sol) polarization free energy of solvation -60.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds