Wall clock time and date at job start Mon Mar 30 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 13 13 N 1.46899 * 109.49733 * 65.39251 * 11 10 9 14 14 C 1.53075 * 109.29571 * 305.57547 * 11 10 9 15 15 C 1.53045 * 109.65346 * 61.15848 * 14 11 10 16 16 H 1.08993 * 109.49940 * 58.64865 * 15 14 11 17 17 C 1.53001 * 109.51996 * 178.73248 * 15 14 11 18 18 C 1.50705 * 109.46884 * 184.85226 * 17 15 14 19 19 C 1.38424 * 122.53928 * 89.99527 * 18 17 15 20 20 C 1.33387 * 114.91897 * 179.97438 * 19 18 17 21 21 S 1.75887 * 109.59476 * 0.02562 * 20 19 18 22 22 C 1.33392 * 122.53562 * 269.70937 * 18 17 15 23 23 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 24 24 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 26 26 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 27 27 H 1.00894 * 111.00371 * 59.99615 * 13 11 10 28 28 H 1.00899 * 110.99822 * 183.95437 * 13 11 10 29 29 H 1.08990 * 109.34912 * 301.13395 * 14 11 10 30 30 H 1.09001 * 109.44851 * 181.24180 * 14 11 10 31 31 H 1.08995 * 109.46805 * 304.84570 * 17 15 14 32 32 H 1.08997 * 109.47194 * 64.85097 * 17 15 14 33 33 H 1.07997 * 122.53755 * 359.96170 * 19 18 17 34 34 H 1.07995 * 125.20384 * 179.97438 * 20 19 18 35 35 H 1.07997 * 125.20727 * 0.02562 * 22 18 17 36 36 H 1.09007 * 109.58325 * 246.20224 * 23 9 7 37 37 H 1.08996 * 109.58499 * 6.48109 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 1 -0.3880 -3.3841 3.0518 13 7 1.6379 -2.8474 3.2061 14 6 0.8120 -4.7009 1.8361 15 6 2.0675 -4.6174 0.9647 16 1 2.9024 -4.2537 1.5636 17 6 2.4005 -6.0053 0.4136 18 6 3.7012 -5.9455 -0.3453 19 6 4.9268 -6.1650 0.2594 20 6 5.9794 -6.0754 -0.5550 21 16 5.4346 -5.6936 -2.1832 22 6 3.7580 -5.6826 -1.6518 23 6 1.8138 -3.6528 -0.1981 24 1 -0.4850 0.8400 -0.0004 25 1 0.0994 -1.3343 1.6687 26 1 -0.6774 -2.6381 0.7363 27 1 1.4555 -1.9350 3.5964 28 1 1.8750 -3.5094 3.9297 29 1 -0.0281 -5.0409 1.2308 30 1 0.9814 -5.4053 2.6504 31 1 2.4936 -6.7111 1.2389 32 1 1.6041 -6.3313 -0.2553 33 1 5.0235 -6.3914 1.3110 34 1 7.0088 -6.2150 -0.2596 35 1 2.9052 -5.4901 -2.2859 36 1 1.0401 -4.0604 -0.8488 37 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108229701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:54 Heat of formation + Delta-G solvation = 49.322361 kcal Electronic energy + Delta-G solvation = -18647.960902 eV Core-core repulsion = 15938.034439 eV Total energy + Delta-G solvation = -2709.926463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.80024 -37.25490 -33.54472 -33.06631 -30.60932 -29.30515 -27.69499 -26.27925 -25.15310 -22.82427 -21.60753 -20.71097 -18.50779 -18.41054 -17.19650 -16.59616 -15.29153 -14.90014 -14.60436 -14.28421 -13.92293 -13.68548 -13.05951 -12.96072 -12.69177 -12.48634 -12.31056 -11.94782 -11.67048 -11.43435 -11.13850 -11.00743 -10.72579 -10.60505 -10.53370 -10.23594 -9.98319 -9.73466 -9.54939 -9.41674 -8.52579 -8.34979 -8.08770 -7.77760 -6.47501 -5.65767 -3.03992 1.25494 1.90009 2.21875 2.97357 3.44668 3.51404 3.55837 4.61397 5.07276 5.20797 5.29914 5.45731 5.47198 5.54671 5.59737 5.71430 5.80902 5.89546 5.95675 6.11678 6.24168 6.29938 6.34226 6.42180 6.49546 6.63134 6.73916 6.76291 6.97178 7.02747 7.20508 7.36783 7.67250 7.92352 7.97506 8.19423 8.59827 9.36017 10.00691 10.57956 11.43238 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.006654 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.286839 B = 4207.135606 C = 5184.272394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.004 4.004 3 Si 0.898 3.102 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.060 0.940 9 N -0.575 5.575 10 C 0.178 3.822 11 C 0.064 3.936 12 H 0.015 0.985 13 N -0.823 5.823 14 C -0.096 4.096 15 C -0.089 4.089 16 H 0.083 0.917 17 C -0.057 4.057 18 C -0.089 4.089 19 C -0.123 4.123 20 C -0.218 4.218 21 S 0.071 5.929 22 C -0.202 4.202 23 C 0.158 3.842 24 H 0.250 0.750 25 H 0.085 0.915 26 H 0.018 0.982 27 H 0.336 0.664 28 H 0.318 0.682 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.008 0.992 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 -13.162 2.125 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.201 4.201 3 Si 0.728 3.272 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.078 0.922 9 N -0.296 5.296 10 C 0.052 3.948 11 C -0.049 4.049 12 H 0.033 0.967 13 N -0.352 5.352 14 C -0.134 4.134 15 C -0.110 4.110 16 H 0.101 0.899 17 C -0.098 4.098 18 C -0.100 4.100 19 C -0.154 4.154 20 C -0.353 4.353 21 S 0.334 5.666 22 C -0.338 4.338 23 C 0.032 3.968 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.036 0.964 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.025 0.975 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.073 -12.792 -0.001 14.618 hybrid contribution -0.950 0.733 2.209 2.513 sum 6.123 -12.059 2.208 13.704 Atomic orbital electron populations 1.70026 1.05150 1.25064 1.55426 1.24937 0.95198 0.98091 1.01847 0.86359 0.79238 0.84055 0.77545 1.21698 1.21829 1.20599 1.19106 0.92278 0.84886 1.39479 0.92200 1.43704 1.35362 1.01330 1.49229 1.20756 0.88728 0.97794 0.87568 1.22122 0.89899 0.96517 0.96332 0.96741 1.58531 1.41965 1.05964 1.28759 1.21465 0.97962 0.95894 0.98105 1.21504 0.98071 0.92998 0.98397 0.89897 1.20457 0.92446 0.98594 0.98255 1.18958 0.96289 1.01582 0.93211 1.20088 0.91388 1.03133 1.00829 1.25477 1.02749 1.10652 0.96430 1.84138 1.01039 1.70542 1.10862 1.25459 0.99101 1.10107 0.99085 1.20901 0.96988 0.86569 0.92371 0.93987 0.89641 0.96394 0.85118 0.87104 0.92681 0.94066 0.91813 0.91597 0.84604 0.82366 0.81957 0.97457 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.79 11.20 55.49 0.62 -26.16 16 2 C 0.00 -0.11 4.92 -17.43 -0.09 -0.19 16 3 Si 0.90 22.35 29.59 -169.99 -5.03 17.32 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.39 9.58 -15.06 -0.14 -6.54 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 9 N -0.58 -14.55 2.92 -172.32 -0.50 -15.05 16 10 C 0.18 4.27 4.90 -3.71 -0.02 4.25 16 11 C 0.06 1.21 3.61 -67.58 -0.24 0.97 16 12 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 13 N -0.82 -14.75 8.34 -4.55 -0.04 -14.79 16 14 C -0.10 -1.62 4.82 -26.67 -0.13 -1.75 16 15 C -0.09 -1.57 2.18 -90.50 -0.20 -1.76 16 16 H 0.08 1.63 7.54 -51.93 -0.39 1.23 16 17 C -0.06 -0.82 4.96 -27.88 -0.14 -0.96 16 18 C -0.09 -1.29 4.62 -106.24 -0.49 -1.78 16 19 C -0.12 -1.66 9.98 -41.21 -0.41 -2.07 16 20 C -0.22 -2.73 11.23 29.04 0.33 -2.41 16 21 S 0.07 0.93 23.34 -107.50 -2.51 -1.58 16 22 C -0.20 -2.93 9.53 29.04 0.28 -2.66 16 23 C 0.16 3.40 5.26 -3.71 -0.02 3.38 16 24 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.34 6.05 9.04 -39.29 -0.36 5.70 16 28 H 0.32 4.76 8.99 -39.29 -0.35 4.41 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.05 1.17 6.52 -51.93 -0.34 0.83 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -30.14 307.76 -9.62 -39.76 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.53 Total: 7.38 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.28 Total: -11.51 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.08 Total: -56.01 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.58 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.14 -9.62 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.084 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds