Wall clock time and date at job start Mon Mar 30 2020 05:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 13 13 N 1.46899 * 109.49733 * 65.39251 * 11 10 9 14 14 C 1.53075 * 109.29571 * 305.57547 * 11 10 9 15 15 C 1.53045 * 109.65346 * 61.15848 * 14 11 10 16 16 H 1.08993 * 109.49940 * 58.64865 * 15 14 11 17 17 C 1.53001 * 109.51996 * 178.73248 * 15 14 11 18 18 C 1.50705 * 109.46884 * 184.85226 * 17 15 14 19 19 C 1.38424 * 122.53928 * 89.99527 * 18 17 15 20 20 C 1.33387 * 114.91897 * 179.97438 * 19 18 17 21 21 S 1.75887 * 109.59476 * 0.02562 * 20 19 18 22 22 C 1.33392 * 122.53562 * 269.70937 * 18 17 15 23 23 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 24 24 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 26 26 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 27 27 H 1.00894 * 111.00371 * 59.99615 * 13 11 10 28 28 H 1.00899 * 110.99822 * 183.95437 * 13 11 10 29 29 H 1.08990 * 109.34912 * 301.13395 * 14 11 10 30 30 H 1.09001 * 109.44851 * 181.24180 * 14 11 10 31 31 H 1.08995 * 109.46805 * 304.84570 * 17 15 14 32 32 H 1.08997 * 109.47194 * 64.85097 * 17 15 14 33 33 H 1.07997 * 122.53755 * 359.96170 * 19 18 17 34 34 H 1.07995 * 125.20384 * 179.97438 * 20 19 18 35 35 H 1.07997 * 125.20727 * 0.02562 * 22 18 17 36 36 H 1.09007 * 109.58325 * 246.20224 * 23 9 7 37 37 H 1.08996 * 109.58499 * 6.48109 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 1 -0.3880 -3.3841 3.0518 13 7 1.6379 -2.8474 3.2061 14 6 0.8120 -4.7009 1.8361 15 6 2.0675 -4.6174 0.9647 16 1 2.9024 -4.2537 1.5636 17 6 2.4005 -6.0053 0.4136 18 6 3.7012 -5.9455 -0.3453 19 6 4.9268 -6.1650 0.2594 20 6 5.9794 -6.0754 -0.5550 21 16 5.4346 -5.6936 -2.1832 22 6 3.7580 -5.6826 -1.6518 23 6 1.8138 -3.6528 -0.1981 24 1 -0.4850 0.8400 -0.0004 25 1 0.0994 -1.3343 1.6687 26 1 -0.6774 -2.6381 0.7363 27 1 1.4555 -1.9350 3.5964 28 1 1.8750 -3.5094 3.9297 29 1 -0.0281 -5.0409 1.2308 30 1 0.9814 -5.4053 2.6504 31 1 2.4936 -6.7111 1.2389 32 1 1.6041 -6.3313 -0.2553 33 1 5.0235 -6.3914 1.3110 34 1 7.0088 -6.2150 -0.2596 35 1 2.9052 -5.4901 -2.2859 36 1 1.0401 -4.0604 -0.8488 37 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108229701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:53 Heat of formation + Delta-G solvation = 30.599644 kcal Electronic energy + Delta-G solvation = -18648.772780 eV Core-core repulsion = 15938.034439 eV Total energy + Delta-G solvation = -2710.738341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15150 -38.60920 -35.43329 -34.46846 -32.52526 -30.51978 -29.22945 -27.67146 -27.09066 -24.01258 -23.42379 -22.15640 -20.09683 -19.51802 -18.55232 -18.25363 -16.81825 -16.57030 -16.05366 -15.91051 -15.51439 -15.27697 -14.56365 -14.36730 -13.89291 -13.86897 -13.66740 -13.54138 -12.99955 -12.94525 -12.78186 -12.56457 -12.45958 -12.32003 -12.16629 -11.81755 -11.66279 -11.36025 -11.14739 -11.09749 -10.47739 -9.57331 -9.23366 -9.13585 -8.52811 -7.79779 -5.21009 0.21539 0.87910 1.18835 1.45352 1.46814 1.57217 1.91652 2.55516 3.33291 3.73419 3.91449 4.01540 4.13275 4.18408 4.27659 4.40820 4.56469 4.68422 4.74409 4.76908 4.87446 4.91465 4.97779 5.08189 5.08675 5.24249 5.30928 5.39831 5.45557 5.61552 5.67371 5.71874 5.75149 5.86182 6.42789 6.54292 6.89955 7.23986 7.97934 8.48816 9.25829 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.006654 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.286839 B = 4207.135606 C = 5184.272394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.052 4.052 3 Si 0.959 3.041 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.051 0.949 9 N -0.591 5.591 10 C 0.184 3.816 11 C 0.073 3.927 12 H 0.031 0.969 13 N -0.831 5.831 14 C -0.093 4.093 15 C -0.072 4.072 16 H 0.068 0.932 17 C -0.049 4.049 18 C -0.097 4.097 19 C -0.138 4.138 20 C -0.212 4.212 21 S 0.072 5.928 22 C -0.226 4.226 23 C 0.158 3.842 24 H 0.247 0.753 25 H 0.051 0.949 26 H -0.008 1.008 27 H 0.334 0.666 28 H 0.340 0.660 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.186 0.814 35 H 0.158 0.842 36 H 0.001 0.999 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 -14.665 3.414 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.246 4.246 3 Si 0.788 3.212 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.367 4.367 8 H 0.069 0.931 9 N -0.313 5.313 10 C 0.057 3.943 11 C -0.040 4.040 12 H 0.049 0.951 13 N -0.362 5.362 14 C -0.131 4.131 15 C -0.093 4.093 16 H 0.086 0.914 17 C -0.089 4.089 18 C -0.110 4.110 19 C -0.168 4.168 20 C -0.347 4.347 21 S 0.335 5.665 22 C -0.361 4.361 23 C 0.033 3.967 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.010 0.990 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.203 0.797 35 H 0.176 0.824 36 H 0.018 0.982 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.357 -14.336 1.299 16.645 hybrid contribution -1.316 1.180 1.749 2.487 sum 7.041 -13.156 3.049 15.230 Atomic orbital electron populations 1.70172 1.06377 1.25355 1.56720 1.25595 0.95921 1.00866 1.02268 0.85399 0.78125 0.80353 0.77324 1.21594 1.21797 1.20037 1.19290 0.92070 0.86334 1.38988 0.93144 1.43927 1.35460 1.01905 1.49994 1.20579 0.87502 0.97411 0.88799 1.21876 0.91106 0.96153 0.94818 0.95115 1.58429 1.41490 1.06539 1.29696 1.21465 0.97475 0.95128 0.99014 1.21244 0.97913 0.93672 0.96438 0.91402 1.20380 0.92563 0.96813 0.99155 1.19136 0.96969 1.01652 0.93217 1.20311 0.91002 1.03575 1.01924 1.25860 1.04008 1.09258 0.95618 1.84116 1.00215 1.70421 1.11717 1.25592 0.99889 1.11030 0.99611 1.21002 0.95843 0.86001 0.93892 0.94433 0.93025 0.98975 0.85366 0.84697 0.92501 0.90419 0.89090 0.91181 0.82727 0.79708 0.82437 0.98153 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 11.20 21.65 0.24 -56.48 16 2 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 3 Si 0.96 46.68 29.59 68.60 2.03 48.71 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.24 -13.52 9.58 84.03 0.81 -12.71 16 8 H 0.05 2.93 7.89 -2.91 -0.02 2.91 16 9 N -0.59 -30.39 2.92 -699.10 -2.04 -32.43 16 10 C 0.18 8.94 4.90 86.36 0.42 9.37 16 11 C 0.07 2.67 3.61 45.00 0.16 2.83 16 12 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 13 N -0.83 -28.31 8.34 -168.30 -1.40 -29.71 16 14 C -0.09 -2.87 4.82 30.63 0.15 -2.72 16 15 C -0.07 -2.40 2.18 -10.71 -0.02 -2.43 16 16 H 0.07 2.51 7.54 -2.39 -0.02 2.49 16 17 C -0.05 -1.27 4.96 29.85 0.15 -1.12 16 18 C -0.10 -2.66 4.62 -20.92 -0.10 -2.76 16 19 C -0.14 -3.34 9.98 21.22 0.21 -3.13 16 20 C -0.21 -4.80 11.23 66.72 0.75 -4.05 16 21 S 0.07 1.80 23.34 -56.49 -1.32 0.48 16 22 C -0.23 -6.42 9.53 66.72 0.64 -5.78 16 23 C 0.16 6.81 5.26 86.36 0.45 7.27 16 24 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.05 2.85 6.06 -2.39 -0.01 2.84 16 26 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.33 11.71 9.04 -89.70 -0.81 10.90 16 28 H 0.34 9.14 8.99 -89.69 -0.81 8.33 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 1.92 8.13 -2.39 -0.02 1.90 16 32 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 33 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.16 4.47 8.06 -2.91 -0.02 4.44 16 36 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 37 H 0.04 1.77 6.52 -2.39 -0.02 1.76 16 Total: -1.00 -65.79 307.76 1.00 -64.79 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.54 Total: 22.48 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.03 Total: -17.84 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -3.20 Total: -118.63 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.32 Total: 0.48 kcal Total: -65.79 1.00 -64.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.390 kcal (2) G-P(sol) polarization free energy of solvation -65.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds