Wall clock time and date at job start Mon Mar 30 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86793 * 120.00251 * 2 1 4 4 H 1.48502 * 109.47354 * 179.72626 * 3 2 1 5 5 H 1.48501 * 109.47240 * 299.72443 * 3 2 1 6 6 H 1.48503 * 109.47229 * 59.72264 * 3 2 1 7 7 C 1.38817 * 119.99760 * 179.72375 * 2 1 3 8 8 H 1.08002 * 119.99771 * 162.74493 * 7 2 1 9 9 N 1.36934 * 120.00285 * 342.74524 * 7 2 1 10 10 C 1.46920 * 120.63327 * 152.37990 * 9 7 2 11 11 C 1.53198 * 108.77460 * 126.36776 * 10 9 7 12 12 H 1.08995 * 109.49976 * 294.65082 * 11 10 9 13 13 N 1.46903 * 109.49525 * 174.58739 * 11 10 9 14 14 C 1.53035 * 109.31055 * 54.63795 * 11 10 9 15 15 C 1.53038 * 109.53950 * 298.63359 * 14 11 10 16 16 H 1.08997 * 109.49806 * 301.41597 * 15 14 11 17 17 C 1.53006 * 109.49843 * 181.34901 * 15 14 11 18 18 C 1.50701 * 109.47028 * 174.99993 * 17 15 14 19 19 C 1.38421 * 122.53680 * 269.73698 * 18 17 15 20 20 C 1.33391 * 114.91347 * 179.76272 * 19 18 17 21 21 S 1.75876 * 109.59797 * 0.47524 * 20 19 18 22 22 C 1.33394 * 122.53569 * 90.02500 * 18 17 15 23 23 C 1.46931 * 120.62972 * 332.10565 * 9 7 2 24 24 H 0.97003 * 120.00217 * 0.27596 * 1 2 3 25 25 H 1.09000 * 109.59221 * 246.15838 * 10 9 7 26 26 H 1.09005 * 109.58771 * 6.58463 * 10 9 7 27 27 H 1.00903 * 111.00179 * 60.00432 * 13 11 10 28 28 H 1.00899 * 110.99723 * 183.95605 * 13 11 10 29 29 H 1.09004 * 109.45978 * 58.65866 * 14 11 10 30 30 H 1.09004 * 109.46239 * 178.61049 * 14 11 10 31 31 H 1.09005 * 109.46897 * 295.00158 * 17 15 14 32 32 H 1.08996 * 109.46838 * 54.99946 * 17 15 14 33 33 H 1.08000 * 122.54202 * 359.97438 * 19 18 17 34 34 H 1.08011 * 125.19915 * 180.21169 * 20 19 18 35 35 H 1.07994 * 125.20790 * 359.97438 * 22 18 17 36 36 H 1.09003 * 109.58556 * 353.41387 * 23 9 7 37 37 H 1.08995 * 109.58969 * 113.84096 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 3.7101 1.3463 0.0067 5 1 1.8965 2.3935 -1.2158 6 1 1.8864 2.3993 1.2091 7 6 2.0101 -1.2022 0.0058 8 1 3.0537 -1.2246 -0.2715 9 7 1.3717 -2.3597 0.3631 10 6 1.8203 -3.6556 -0.1642 11 6 2.0735 -4.6051 1.0111 12 1 2.9063 -4.2322 1.6072 13 7 2.3977 -5.9433 0.4990 14 6 0.8161 -4.6814 1.8800 15 6 0.4963 -3.2938 2.4405 16 1 1.3435 -2.9328 3.0236 17 6 -0.7414 -3.3776 3.3361 18 6 -0.9838 -2.0390 3.9846 19 6 -0.4351 -1.6940 5.2077 20 6 -0.7451 -0.4699 5.6374 21 16 -1.7961 0.3175 4.4675 22 6 -1.7478 -1.0990 3.4260 23 6 0.2287 -2.3300 1.2859 24 1 -0.4850 0.8400 -0.0040 25 1 1.0495 -4.0732 -0.8119 26 1 2.7422 -3.5205 -0.7299 27 1 3.2235 -5.9186 -0.0803 28 1 2.5057 -6.6032 1.2547 29 1 -0.0216 -5.0314 1.2766 30 1 0.9852 -5.3755 2.7033 31 1 -1.6077 -3.6518 2.7340 32 1 -0.5816 -4.1312 4.1071 33 1 0.1987 -2.3639 5.7698 34 1 -0.4061 -0.0310 6.5643 35 1 -2.2582 -1.1931 2.4789 36 1 0.1007 -1.3205 1.6767 37 1 -0.6745 -2.6373 0.7589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108229704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:58 Heat of formation + Delta-G solvation = 44.924261 kcal Electronic energy + Delta-G solvation = -18726.031407 eV Core-core repulsion = 16015.914228 eV Total energy + Delta-G solvation = -2710.117179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.70604 -37.19759 -33.94906 -33.10304 -30.85827 -29.30074 -27.38465 -26.28375 -25.22519 -22.70381 -21.68775 -20.46981 -18.92925 -18.23672 -17.06323 -16.61092 -15.25892 -15.09407 -14.75791 -14.40723 -14.03405 -13.59791 -13.00339 -12.90504 -12.59997 -12.45759 -12.29908 -12.07916 -11.59569 -11.41534 -11.11536 -10.94677 -10.81311 -10.71217 -10.35516 -10.25330 -10.01786 -9.80735 -9.58270 -9.39984 -8.45933 -8.31163 -8.26584 -7.90010 -6.62681 -5.75582 -3.16664 1.46375 2.10215 2.43191 3.14770 3.38991 3.47013 3.48397 4.49928 4.87764 5.22075 5.38197 5.45064 5.50218 5.61512 5.65306 5.72982 5.85330 5.98683 6.04738 6.09755 6.25874 6.31243 6.38197 6.45867 6.54439 6.73609 6.83098 6.84293 6.92164 6.96061 7.06409 7.45790 7.56962 7.74437 7.79018 7.84817 8.49664 9.25727 9.89264 10.45863 11.32795 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.009581 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.213215 B = 2921.764022 C = 4668.649131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.007 3.993 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.155 3.845 11 C 0.072 3.928 12 H 0.029 0.971 13 N -0.848 5.848 14 C -0.094 4.094 15 C -0.107 4.107 16 H 0.061 0.939 17 C -0.047 4.047 18 C -0.102 4.102 19 C -0.123 4.123 20 C -0.226 4.226 21 S 0.074 5.926 22 C -0.178 4.178 23 C 0.176 3.824 24 H 0.252 0.748 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.336 0.664 28 H 0.331 0.669 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.096 0.904 37 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 -5.787 9.415 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.192 4.192 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.028 3.972 11 C -0.040 4.040 12 H 0.047 0.953 13 N -0.377 5.377 14 C -0.132 4.132 15 C -0.129 4.129 16 H 0.080 0.920 17 C -0.088 4.088 18 C -0.113 4.113 19 C -0.154 4.154 20 C -0.361 4.361 21 S 0.337 5.663 22 C -0.313 4.313 23 C 0.051 3.949 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.174 0.826 35 H 0.184 0.816 36 H 0.114 0.886 37 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.020 -4.133 8.952 10.312 hybrid contribution 2.141 -0.301 0.614 2.247 sum -0.879 -4.434 9.566 10.580 Atomic orbital electron populations 1.70029 1.05126 1.25173 1.53747 1.24958 0.95251 0.98132 1.00837 0.86328 0.79450 0.84334 0.77341 1.20359 1.21718 1.21443 1.19177 0.92597 0.84984 1.41542 0.91908 1.43997 1.35987 1.01023 1.50309 1.20824 0.97754 0.86295 0.92343 1.21941 0.96205 0.88441 0.97450 0.95316 1.58734 1.43853 1.09085 1.25991 1.21446 0.97706 0.96484 0.97613 1.21747 0.96271 0.96471 0.98365 0.92011 1.20292 0.99004 0.91834 0.97679 1.18877 0.99055 0.98239 0.95163 1.20033 1.02183 0.96540 0.96683 1.25430 1.07245 0.99138 1.04318 1.84122 1.48541 1.19808 1.13814 1.25503 1.06485 0.95553 1.03777 1.20828 0.88290 0.98756 0.87073 0.93808 0.95597 0.93428 0.85249 0.85757 0.91932 0.93985 0.91364 0.92029 0.84914 0.82589 0.81597 0.88576 0.96814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.20 55.49 0.62 -25.05 16 2 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 3 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.19 16 8 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.98 3.00 -172.58 -0.52 -15.50 16 10 C 0.15 3.38 6.10 -3.71 -0.02 3.36 16 11 C 0.07 1.30 3.40 -67.59 -0.23 1.07 16 12 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 13 N -0.85 -12.45 9.25 -4.56 -0.04 -12.49 16 14 C -0.09 -1.63 4.71 -26.69 -0.13 -1.76 16 15 C -0.11 -2.04 2.31 -90.72 -0.21 -2.24 16 16 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 17 C -0.05 -0.76 4.96 -27.88 -0.14 -0.90 16 18 C -0.10 -1.71 4.62 -106.25 -0.49 -2.21 16 19 C -0.12 -1.89 9.98 -41.21 -0.41 -2.30 16 20 C -0.23 -3.31 11.23 29.04 0.33 -2.99 16 21 S 0.07 1.17 23.34 -107.50 -2.51 -1.34 16 22 C -0.18 -3.12 9.52 29.04 0.28 -2.85 16 23 C 0.18 4.15 4.03 -3.93 -0.02 4.14 16 24 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 27 H 0.34 4.46 9.04 -39.29 -0.36 4.10 16 28 H 0.33 4.12 9.00 -39.29 -0.35 3.77 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 32 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 33 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.17 3.00 8.06 -52.49 -0.42 2.58 16 36 H 0.10 2.50 4.62 -51.93 -0.24 2.26 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -29.52 309.11 -9.65 -39.17 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.56 Total: 7.35 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.27 Total: -13.76 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.06 Total: -53.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.52 -9.65 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.097 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds