Wall clock time and date at job start Mon Mar 30 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86793 * 120.00251 * 2 1 4 4 H 1.48502 * 109.47354 * 179.72626 * 3 2 1 5 5 H 1.48501 * 109.47240 * 299.72443 * 3 2 1 6 6 H 1.48503 * 109.47229 * 59.72264 * 3 2 1 7 7 C 1.38817 * 119.99760 * 179.72375 * 2 1 3 8 8 H 1.08002 * 119.99771 * 162.74493 * 7 2 1 9 9 N 1.36934 * 120.00285 * 342.74524 * 7 2 1 10 10 C 1.46920 * 120.63327 * 152.37990 * 9 7 2 11 11 C 1.53198 * 108.77460 * 126.36776 * 10 9 7 12 12 H 1.08995 * 109.49976 * 294.65082 * 11 10 9 13 13 N 1.46903 * 109.49525 * 174.58739 * 11 10 9 14 14 C 1.53035 * 109.31055 * 54.63795 * 11 10 9 15 15 C 1.53038 * 109.53950 * 298.63359 * 14 11 10 16 16 H 1.08997 * 109.49806 * 301.41597 * 15 14 11 17 17 C 1.53006 * 109.49843 * 181.34901 * 15 14 11 18 18 C 1.50701 * 109.47028 * 174.99993 * 17 15 14 19 19 C 1.38421 * 122.53680 * 269.73698 * 18 17 15 20 20 C 1.33391 * 114.91347 * 179.76272 * 19 18 17 21 21 S 1.75876 * 109.59797 * 0.47524 * 20 19 18 22 22 C 1.33394 * 122.53569 * 90.02500 * 18 17 15 23 23 C 1.46931 * 120.62972 * 332.10565 * 9 7 2 24 24 H 0.97003 * 120.00217 * 0.27596 * 1 2 3 25 25 H 1.09000 * 109.59221 * 246.15838 * 10 9 7 26 26 H 1.09005 * 109.58771 * 6.58463 * 10 9 7 27 27 H 1.00903 * 111.00179 * 60.00432 * 13 11 10 28 28 H 1.00899 * 110.99723 * 183.95605 * 13 11 10 29 29 H 1.09004 * 109.45978 * 58.65866 * 14 11 10 30 30 H 1.09004 * 109.46239 * 178.61049 * 14 11 10 31 31 H 1.09005 * 109.46897 * 295.00158 * 17 15 14 32 32 H 1.08996 * 109.46838 * 54.99946 * 17 15 14 33 33 H 1.08000 * 122.54202 * 359.97438 * 19 18 17 34 34 H 1.08011 * 125.19915 * 180.21169 * 20 19 18 35 35 H 1.07994 * 125.20790 * 359.97438 * 22 18 17 36 36 H 1.09003 * 109.58556 * 353.41387 * 23 9 7 37 37 H 1.08995 * 109.58969 * 113.84096 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 3.7101 1.3463 0.0067 5 1 1.8965 2.3935 -1.2158 6 1 1.8864 2.3993 1.2091 7 6 2.0101 -1.2022 0.0058 8 1 3.0537 -1.2246 -0.2715 9 7 1.3717 -2.3597 0.3631 10 6 1.8203 -3.6556 -0.1642 11 6 2.0735 -4.6051 1.0111 12 1 2.9063 -4.2322 1.6072 13 7 2.3977 -5.9433 0.4990 14 6 0.8161 -4.6814 1.8800 15 6 0.4963 -3.2938 2.4405 16 1 1.3435 -2.9328 3.0236 17 6 -0.7414 -3.3776 3.3361 18 6 -0.9838 -2.0390 3.9846 19 6 -0.4351 -1.6940 5.2077 20 6 -0.7451 -0.4699 5.6374 21 16 -1.7961 0.3175 4.4675 22 6 -1.7478 -1.0990 3.4260 23 6 0.2287 -2.3300 1.2859 24 1 -0.4850 0.8400 -0.0040 25 1 1.0495 -4.0732 -0.8119 26 1 2.7422 -3.5205 -0.7299 27 1 3.2235 -5.9186 -0.0803 28 1 2.5057 -6.6032 1.2547 29 1 -0.0216 -5.0314 1.2766 30 1 0.9852 -5.3755 2.7033 31 1 -1.6077 -3.6518 2.7340 32 1 -0.5816 -4.1312 4.1071 33 1 0.1987 -2.3639 5.7698 34 1 -0.4061 -0.0310 6.5643 35 1 -2.2582 -1.1931 2.4789 36 1 0.1007 -1.3205 1.6767 37 1 -0.6745 -2.6373 0.7589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108229704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:57 Heat of formation + Delta-G solvation = 26.518697 kcal Electronic energy + Delta-G solvation = -18726.829532 eV Core-core repulsion = 16015.914228 eV Total energy + Delta-G solvation = -2710.915304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.17828 -38.61554 -35.70264 -34.59243 -32.78188 -30.62110 -28.89186 -27.81551 -27.13551 -24.03119 -23.49454 -21.93798 -20.57527 -19.50389 -18.69998 -18.21796 -16.92926 -16.55396 -16.15088 -15.89779 -15.82254 -15.22610 -14.67027 -14.31269 -14.04041 -13.91440 -13.81503 -13.58570 -12.99405 -12.96188 -12.87491 -12.69371 -12.51330 -12.19276 -12.14671 -11.92765 -11.69433 -11.46579 -11.20002 -11.10106 -10.51686 -9.56863 -9.54711 -9.17824 -8.66277 -7.86304 -5.30885 0.22006 0.87003 1.19264 1.42104 1.44706 1.53850 1.90345 2.48867 3.27640 3.48680 3.84155 4.04090 4.08327 4.18525 4.21103 4.36923 4.47407 4.63041 4.65916 4.72495 4.84503 4.87034 4.91080 5.05323 5.13060 5.17030 5.25999 5.28848 5.39932 5.58653 5.66746 5.70396 5.74303 5.87539 6.28111 6.42977 6.72791 7.16856 7.88051 8.39437 9.18964 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.009581 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.213215 B = 2921.764022 C = 4668.649131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.039 4.039 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.268 4.268 8 H 0.060 0.940 9 N -0.610 5.610 10 C 0.152 3.848 11 C 0.086 3.914 12 H 0.024 0.976 13 N -0.843 5.843 14 C -0.089 4.089 15 C -0.094 4.094 16 H 0.052 0.948 17 C -0.042 4.042 18 C -0.105 4.105 19 C -0.135 4.135 20 C -0.214 4.214 21 S 0.063 5.937 22 C -0.209 4.209 23 C 0.186 3.814 24 H 0.248 0.752 25 H 0.010 0.990 26 H 0.044 0.956 27 H 0.346 0.654 28 H 0.350 0.650 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.146 0.854 36 H 0.069 0.931 37 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -7.010 11.369 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.236 4.236 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.398 4.398 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.026 3.974 11 C -0.026 4.026 12 H 0.042 0.958 13 N -0.375 5.375 14 C -0.127 4.127 15 C -0.115 4.115 16 H 0.071 0.929 17 C -0.082 4.082 18 C -0.117 4.117 19 C -0.165 4.165 20 C -0.349 4.349 21 S 0.327 5.673 22 C -0.345 4.345 23 C 0.061 3.939 24 H 0.057 0.943 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.159 0.841 28 H 0.164 0.836 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.179 0.821 34 H 0.206 0.794 35 H 0.164 0.836 36 H 0.087 0.913 37 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges -1.742 -5.395 10.910 12.295 hybrid contribution 1.747 0.057 -0.060 1.749 sum 0.005 -5.339 10.850 12.092 Atomic orbital electron populations 1.70174 1.06286 1.25448 1.54693 1.25637 0.95990 1.00865 1.01099 0.85405 0.78790 0.80632 0.76893 1.19301 1.21780 1.21618 1.19445 0.92729 0.86264 1.41340 0.92186 1.44273 1.36237 1.01667 1.51119 1.20914 0.96807 0.85830 0.93880 1.21586 0.96488 0.89091 0.95474 0.95812 1.58599 1.44692 1.07497 1.26722 1.21400 0.96909 0.95897 0.98474 1.21513 0.97179 0.96196 0.96638 0.92924 1.20279 0.97428 0.92557 0.97974 1.19145 0.98502 0.98242 0.95814 1.20297 1.02635 0.97348 0.96245 1.25853 1.05733 0.98684 1.04655 1.84093 1.49400 1.19583 1.14260 1.25473 1.08020 0.97077 1.03893 1.20631 0.86719 0.98610 0.87990 0.94255 0.97232 0.93784 0.84149 0.83605 0.92716 0.90283 0.91627 0.88556 0.82149 0.79381 0.83638 0.91301 0.99791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.51 11.20 21.65 0.24 -54.27 16 2 C -0.04 -2.24 4.91 84.86 0.42 -1.82 16 3 Si 0.95 45.78 29.59 68.60 2.03 47.80 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.27 -15.13 9.58 84.04 0.81 -14.32 16 8 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -31.54 3.00 -699.91 -2.10 -33.64 16 10 C 0.15 6.66 6.10 86.37 0.53 7.18 16 11 C 0.09 2.95 3.40 44.99 0.15 3.10 16 12 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 13 N -0.84 -22.48 9.25 -168.35 -1.56 -24.03 16 14 C -0.09 -2.86 4.71 30.62 0.14 -2.71 16 15 C -0.09 -3.47 2.31 -10.86 -0.03 -3.50 16 16 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 17 C -0.04 -1.28 4.96 29.85 0.15 -1.14 16 18 C -0.10 -3.44 4.62 -20.92 -0.10 -3.54 16 19 C -0.13 -3.80 9.98 21.22 0.21 -3.59 16 20 C -0.21 -5.78 11.23 66.72 0.75 -5.03 16 21 S 0.06 2.00 23.34 -56.49 -1.32 0.68 16 22 C -0.21 -7.56 9.52 66.72 0.64 -6.92 16 23 C 0.19 8.99 4.03 86.22 0.35 9.34 16 24 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.04 1.90 7.93 -2.38 -0.02 1.88 16 27 H 0.35 8.31 9.04 -89.69 -0.81 7.50 16 28 H 0.35 7.37 9.00 -89.69 -0.81 6.56 16 29 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.07 2.04 8.12 -2.38 -0.02 2.02 16 32 H 0.10 2.31 8.13 -2.39 -0.02 2.29 16 33 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 34 H 0.19 3.77 8.06 -2.90 -0.02 3.74 16 35 H 0.15 5.72 8.06 -2.91 -0.02 5.69 16 36 H 0.07 3.72 4.62 -2.39 -0.01 3.71 16 37 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 Total: -1.00 -65.04 309.11 0.77 -64.27 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.55 Total: 22.13 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 4.02 Total: -22.95 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -3.41 Total: -111.94 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.32 Total: 0.68 kcal Total: -65.04 0.77 -64.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108229704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.789 kcal (2) G-P(sol) polarization free energy of solvation -65.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds