Wall clock time and date at job start Mon Mar 30 2020 04:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46972 * 2 1 4 4 C 1.50701 * 109.47421 * 240.00394 * 2 1 3 5 5 H 1.07998 * 119.99910 * 239.99639 * 4 2 1 6 6 C 1.37881 * 119.99850 * 59.99802 * 4 2 1 7 7 N 1.31512 * 120.00247 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99894 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47055 * 59.99395 * 8 6 4 10 10 H 1.48494 * 109.47108 * 179.97438 * 8 6 4 11 11 H 1.48509 * 109.46720 * 299.99814 * 8 6 4 12 12 O 1.45201 * 109.47606 * 120.00065 * 2 1 3 13 13 C 1.34875 * 116.99913 * 270.00785 * 12 2 1 14 14 O 1.21602 * 120.00001 * 359.71461 * 13 12 2 15 15 C 1.46636 * 119.99887 * 179.97438 * 13 12 2 16 16 C 1.36440 * 125.85853 * 179.74628 * 15 13 12 17 17 C 1.41253 * 107.00309 * 179.97438 * 16 15 13 18 18 C 1.47401 * 126.45205 * 179.97438 * 17 16 15 19 19 N 1.34769 * 120.00136 * 0.03015 * 18 17 16 20 20 O 1.21620 * 119.99538 * 180.02562 * 18 17 16 21 21 C 1.38236 * 107.09263 * 0.02562 * 17 16 15 22 22 N 1.34241 * 108.41359 * 359.72615 * 21 17 16 23 23 C 1.46500 * 125.39707 * 180.29555 * 22 21 17 24 24 H 1.09004 * 109.46534 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47186 * 299.99277 * 1 2 3 26 26 H 1.08993 * 109.47184 * 60.00272 * 1 2 3 27 27 H 0.96993 * 120.00304 * 180.02562 * 7 6 4 28 28 H 1.07998 * 126.49888 * 359.97438 * 16 15 13 29 29 H 0.96999 * 120.00551 * 359.97438 * 19 18 17 30 30 H 0.97002 * 119.99727 * 179.97438 * 19 18 17 31 31 H 1.08002 * 125.79928 * 179.97438 * 21 17 16 32 32 H 1.08994 * 109.47085 * 270.16793 * 23 22 21 33 33 H 1.09001 * 109.47328 * 30.16752 * 23 22 21 34 34 H 1.09004 * 109.46917 * 150.16834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.8261 -2.5199 -4.0078 10 1 1.8260 -0.4203 -5.2204 11 1 3.8065 -1.1205 -4.0081 12 8 2.0141 -0.6845 1.1855 13 6 2.2181 0.0676 2.2864 14 8 2.0021 1.2638 2.2541 15 6 2.7058 -0.5563 3.5205 16 6 2.9570 0.0880 4.6966 17 6 3.4070 -0.8873 5.6140 18 6 3.7993 -0.6560 7.0159 19 7 3.7453 0.5867 7.5346 20 8 4.1717 -1.5867 7.7045 21 6 3.4113 -2.0992 4.9491 22 7 2.9836 -1.8952 3.6931 23 6 2.8380 -2.9312 2.6675 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7081 1.1610 -3.4843 28 1 2.8349 1.1436 4.8896 29 1 3.4486 1.3291 6.9853 30 1 4.0031 0.7387 8.4573 31 1 3.7048 -3.0496 5.3698 32 1 3.7710 -3.0262 2.1120 33 1 2.5999 -3.8826 3.1432 34 1 2.0348 -2.6556 1.9841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121443434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:49 Heat of formation + Delta-G solvation = -85.514254 kcal Electronic energy + Delta-G solvation = -19815.976027 eV Core-core repulsion = 16521.616644 eV Total energy + Delta-G solvation = -3294.359383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58116 -39.29837 -38.72599 -35.84019 -33.85202 -33.37027 -32.61916 -30.15382 -29.14951 -26.88745 -25.42018 -23.84415 -22.65251 -20.86382 -19.91885 -19.29044 -18.17167 -16.77419 -16.71889 -16.23361 -15.83435 -15.74820 -15.11145 -14.72077 -14.46429 -14.33182 -13.82456 -13.53461 -13.04503 -12.63430 -12.41491 -12.32186 -12.11381 -11.82222 -11.31631 -11.11356 -10.92098 -10.47927 -10.37689 -10.19147 -9.91962 -9.72822 -9.67151 -9.02828 -8.91490 -8.58204 -8.36259 -6.26793 -4.34825 1.49711 1.77239 2.67078 3.19706 3.23247 3.25258 3.38418 3.46188 3.63182 3.70059 4.25570 4.80033 4.81511 5.06249 5.10176 5.12125 5.33895 5.39670 5.66898 5.84111 6.04616 6.48613 6.52719 6.69491 6.77830 6.80565 6.84027 6.98721 7.06283 7.35711 7.48310 7.62105 7.81830 8.02790 8.30106 8.48487 8.74969 9.30933 10.80513 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038277 B = 0.004234 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.338274 B = 6611.464238 C = 7044.932374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.049 0.951 4 C -0.524 4.524 5 H 0.068 0.932 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 O -0.357 6.357 13 C 0.524 3.476 14 O -0.507 6.507 15 C -0.027 4.027 16 C -0.081 4.081 17 C -0.251 4.251 18 C 0.601 3.399 19 N -0.853 5.853 20 O -0.560 6.560 21 C 0.097 3.903 22 N -0.403 5.403 23 C 0.057 3.943 24 H 0.036 0.964 25 H 0.017 0.983 26 H 0.100 0.900 27 H 0.268 0.732 28 H 0.155 0.845 29 H 0.403 0.597 30 H 0.401 0.599 31 H 0.184 0.816 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -3.896 13.016 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.562 4.562 5 H 0.086 0.914 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.274 6.274 13 C 0.368 3.632 14 O -0.397 6.397 15 C -0.136 4.136 16 C -0.105 4.105 17 C -0.260 4.260 18 C 0.388 3.612 19 N -0.416 5.416 20 O -0.440 6.440 21 C -0.046 4.046 22 N -0.075 5.075 23 C -0.083 4.083 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.172 0.828 29 H 0.231 0.769 30 H 0.232 0.768 31 H 0.201 0.799 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.151 -4.343 12.725 13.810 hybrid contribution 0.161 0.195 -0.831 0.869 sum 3.312 -4.148 11.893 13.024 Atomic orbital electron populations 1.22174 0.97437 1.00121 1.01574 1.20693 0.91412 0.94082 0.77356 0.93365 1.20936 1.32835 1.13607 0.88812 0.91423 1.24879 0.94839 0.95057 0.99063 1.69877 1.35717 1.22425 1.24434 0.86329 0.79224 0.79507 0.81046 1.19942 1.20970 1.19972 1.86559 1.76293 1.43196 1.21347 1.19737 0.75019 0.85186 0.83303 1.90841 1.49192 1.15332 1.84287 1.19508 1.15307 0.83292 0.95445 1.21083 0.99862 0.99249 0.90350 1.19368 1.17654 0.94070 0.94907 1.17336 0.75719 0.82473 0.85622 1.43630 1.71198 1.09800 1.16935 1.90792 1.48765 1.42556 1.61888 1.22299 0.99105 0.99708 0.83461 1.43966 1.45435 1.07564 1.10536 1.22536 1.06003 0.89051 0.90684 0.94469 0.96415 0.88127 0.92221 0.82758 0.76873 0.76823 0.79942 0.89602 0.89470 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.33 37.16 0.35 -3.43 16 2 C 0.22 5.54 2.57 -27.88 -0.07 5.47 16 3 H 0.05 1.38 7.16 -51.92 -0.37 1.01 16 4 C -0.52 -13.95 8.90 -34.44 -0.31 -14.26 16 5 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.91 20.29 29.54 -169.99 -5.02 15.26 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 O -0.36 -7.89 7.22 -40.97 -0.30 -8.18 16 13 C 0.52 10.81 7.89 34.12 0.27 11.08 16 14 O -0.51 -11.73 16.12 -19.34 -0.31 -12.04 16 15 C -0.03 -0.44 6.82 -82.43 -0.56 -1.00 16 16 C -0.08 -1.14 10.03 -39.09 -0.39 -1.54 16 17 C -0.25 -3.32 6.13 -105.02 -0.64 -3.97 16 18 C 0.60 7.78 8.09 -12.53 -0.10 7.68 16 19 N -0.85 -7.59 8.87 30.43 0.27 -7.32 16 20 O -0.56 -9.02 17.74 5.26 0.09 -8.92 16 21 C 0.10 1.21 11.17 -16.50 -0.18 1.03 16 22 N -0.40 -5.54 3.13 -120.15 -0.38 -5.91 16 23 C 0.06 0.67 10.50 59.85 0.63 1.29 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.10 2.63 6.07 -51.93 -0.32 2.31 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.15 1.88 7.54 -52.49 -0.40 1.49 16 29 H 0.40 2.80 7.81 -40.82 -0.32 2.48 16 30 H 0.40 2.86 8.93 -40.82 -0.36 2.49 16 31 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.11 1.60 6.09 -51.93 -0.32 1.28 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -32.56 302.30 -5.31 -37.86 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.74 Total: 4.51 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.11 Total: 3.97 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.52 Total: -37.02 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.51 Total: -29.15 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.56 -5.31 -37.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121443434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.650 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds