Wall clock time and date at job start Mon Mar 30 2020 04:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46972 * 2 1 4 4 C 1.50701 * 109.47421 * 240.00394 * 2 1 3 5 5 H 1.07998 * 119.99910 * 239.99639 * 4 2 1 6 6 C 1.37881 * 119.99850 * 59.99802 * 4 2 1 7 7 N 1.31512 * 120.00247 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99894 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47055 * 59.99395 * 8 6 4 10 10 H 1.48494 * 109.47108 * 179.97438 * 8 6 4 11 11 H 1.48509 * 109.46720 * 299.99814 * 8 6 4 12 12 O 1.45201 * 109.47606 * 120.00065 * 2 1 3 13 13 C 1.34875 * 116.99913 * 270.00785 * 12 2 1 14 14 O 1.21602 * 120.00001 * 359.71461 * 13 12 2 15 15 C 1.46636 * 119.99887 * 179.97438 * 13 12 2 16 16 C 1.36440 * 125.85853 * 179.74628 * 15 13 12 17 17 C 1.41253 * 107.00309 * 179.97438 * 16 15 13 18 18 C 1.47401 * 126.45205 * 179.97438 * 17 16 15 19 19 N 1.34769 * 120.00136 * 0.03015 * 18 17 16 20 20 O 1.21620 * 119.99538 * 180.02562 * 18 17 16 21 21 C 1.38236 * 107.09263 * 0.02562 * 17 16 15 22 22 N 1.34241 * 108.41359 * 359.72615 * 21 17 16 23 23 C 1.46500 * 125.39707 * 180.29555 * 22 21 17 24 24 H 1.09004 * 109.46534 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47186 * 299.99277 * 1 2 3 26 26 H 1.08993 * 109.47184 * 60.00272 * 1 2 3 27 27 H 0.96993 * 120.00304 * 180.02562 * 7 6 4 28 28 H 1.07998 * 126.49888 * 359.97438 * 16 15 13 29 29 H 0.96999 * 120.00551 * 359.97438 * 19 18 17 30 30 H 0.97002 * 119.99727 * 179.97438 * 19 18 17 31 31 H 1.08002 * 125.79928 * 179.97438 * 21 17 16 32 32 H 1.08994 * 109.47085 * 270.16793 * 23 22 21 33 33 H 1.09001 * 109.47328 * 30.16752 * 23 22 21 34 34 H 1.09004 * 109.46917 * 150.16834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.8261 -2.5199 -4.0078 10 1 1.8260 -0.4203 -5.2204 11 1 3.8065 -1.1205 -4.0081 12 8 2.0141 -0.6845 1.1855 13 6 2.2181 0.0676 2.2864 14 8 2.0021 1.2638 2.2541 15 6 2.7058 -0.5563 3.5205 16 6 2.9570 0.0880 4.6966 17 6 3.4070 -0.8873 5.6140 18 6 3.7993 -0.6560 7.0159 19 7 3.7453 0.5867 7.5346 20 8 4.1717 -1.5867 7.7045 21 6 3.4113 -2.0992 4.9491 22 7 2.9836 -1.8952 3.6931 23 6 2.8380 -2.9312 2.6675 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7081 1.1610 -3.4843 28 1 2.8349 1.1436 4.8896 29 1 3.4486 1.3291 6.9853 30 1 4.0031 0.7387 8.4573 31 1 3.7048 -3.0496 5.3698 32 1 3.7710 -3.0262 2.1120 33 1 2.5999 -3.8826 3.1432 34 1 2.0348 -2.6556 1.9841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121443434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:49 Heat of formation + Delta-G solvation = -108.280476 kcal Electronic energy + Delta-G solvation = -19816.963244 eV Core-core repulsion = 16521.616644 eV Total energy + Delta-G solvation = -3295.346600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.72516 -40.89243 -39.82435 -37.61590 -35.36196 -34.79256 -33.63087 -31.92103 -30.58885 -27.86692 -27.46312 -25.31669 -23.72414 -22.64970 -21.01740 -20.65838 -19.39485 -18.62860 -17.90195 -17.65459 -17.16925 -16.94781 -16.67612 -16.12843 -16.03517 -15.38123 -15.08362 -14.64285 -14.56710 -14.30648 -14.01398 -13.47064 -13.33528 -13.30512 -13.07634 -12.85607 -12.75171 -12.38717 -12.17598 -11.73321 -11.60065 -11.17999 -11.01695 -10.61376 -10.60092 -9.98671 -9.50999 -8.28601 -6.45611 0.21028 0.72839 1.42697 1.46065 1.53793 1.61644 1.90548 1.97425 2.40460 2.53120 2.80747 3.02807 3.69167 3.89006 3.91793 4.13764 4.29520 4.43719 4.50202 4.66445 4.76388 4.79754 4.82276 4.93821 5.12633 5.38119 5.46666 5.59328 5.64182 5.87359 5.99304 6.00309 6.04606 6.52246 6.58560 6.87222 7.25689 7.42014 8.78951 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038277 B = 0.004234 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.338274 B = 6611.464238 C = 7044.932374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.219 3.781 3 H 0.007 0.993 4 C -0.545 4.545 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.269 1.269 12 O -0.353 6.353 13 C 0.520 3.480 14 O -0.544 6.544 15 C -0.068 4.068 16 C -0.061 4.061 17 C -0.261 4.261 18 C 0.601 3.399 19 N -0.834 5.834 20 O -0.594 6.594 21 C 0.121 3.879 22 N -0.402 5.402 23 C 0.054 3.946 24 H 0.047 0.953 25 H 0.022 0.978 26 H 0.081 0.919 27 H 0.271 0.729 28 H 0.169 0.831 29 H 0.414 0.586 30 H 0.413 0.587 31 H 0.217 0.783 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -5.527 13.866 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.583 4.583 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.194 1.194 12 O -0.269 6.269 13 C 0.367 3.633 14 O -0.435 6.435 15 C -0.176 4.176 16 C -0.086 4.086 17 C -0.270 4.270 18 C 0.388 3.612 19 N -0.397 5.397 20 O -0.477 6.477 21 C -0.024 4.024 22 N -0.073 5.073 23 C -0.085 4.085 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.186 0.814 29 H 0.244 0.756 30 H 0.245 0.755 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.147 0.853 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.946 -5.945 13.591 15.350 hybrid contribution -0.059 0.728 -0.954 1.201 sum 3.887 -5.217 12.637 14.213 Atomic orbital electron populations 1.21992 0.96746 1.00491 1.00791 1.20385 0.91958 0.92200 0.78844 0.97474 1.21233 1.33450 1.14000 0.89603 0.91000 1.25808 0.94702 0.95620 1.02124 1.70007 1.36505 1.23681 1.25288 0.85250 0.78723 0.78706 0.76841 1.18638 1.20577 1.19419 1.86571 1.76541 1.42721 1.21107 1.20370 0.74152 0.84968 0.83786 1.90809 1.51088 1.16778 1.84860 1.19137 1.18995 0.85151 0.94283 1.21337 0.97593 1.00160 0.89483 1.19500 1.18136 0.94190 0.95179 1.17294 0.75523 0.83105 0.85228 1.43483 1.69618 1.08934 1.17634 1.90782 1.50627 1.43790 1.62465 1.22890 0.96341 1.00762 0.82376 1.44090 1.45063 1.06768 1.11384 1.22682 1.05305 0.90071 0.90491 0.93357 0.95942 0.90065 0.92016 0.81373 0.75559 0.75507 0.76691 0.89077 0.85284 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.12 9.33 71.98 0.67 -6.45 16 2 C 0.22 11.61 2.57 29.85 0.08 11.69 16 3 H 0.01 0.45 7.16 -2.38 -0.02 0.43 16 4 C -0.55 -29.48 8.90 25.60 0.23 -29.26 16 5 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -51.41 11.32 21.45 0.24 -51.17 16 8 Si 0.98 41.26 29.54 68.60 2.03 43.29 16 9 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 12 O -0.35 -16.02 7.22 -57.89 -0.42 -16.44 16 13 C 0.52 22.07 7.89 70.01 0.55 22.62 16 14 O -0.54 -26.17 16.12 19.50 0.31 -25.86 16 15 C -0.07 -2.21 6.82 39.97 0.27 -1.94 16 16 C -0.06 -1.63 10.03 22.59 0.23 -1.40 16 17 C -0.26 -6.31 6.13 -20.12 -0.12 -6.43 16 18 C 0.60 14.14 8.09 86.66 0.70 14.84 16 19 N -0.83 -12.80 8.87 -175.90 -1.56 -14.36 16 20 O -0.59 -17.81 17.74 -4.10 -0.07 -17.88 16 21 C 0.12 2.64 11.17 84.32 0.94 3.59 16 22 N -0.40 -10.30 3.13 -534.04 -1.67 -11.97 16 23 C 0.05 1.15 10.50 127.77 1.34 2.49 16 24 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 4.38 6.07 -2.39 -0.01 4.37 16 27 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.17 3.88 7.54 -2.91 -0.02 3.86 16 29 H 0.41 4.72 7.81 -92.71 -0.72 4.00 16 30 H 0.41 4.85 8.93 -92.71 -0.83 4.02 16 31 H 0.22 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 33 H 0.13 1.63 8.13 -2.39 -0.02 1.61 16 34 H 0.09 2.40 6.09 -2.38 -0.01 2.38 16 Total: -1.00 -71.80 302.30 3.81 -67.99 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.39 Total: 15.27 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.34 Total: 11.13 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -2.99 Total: -77.50 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -0.18 Total: -60.18 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -71.80 3.81 -67.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121443434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.289 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds