Wall clock time and date at job start Mon Mar 30 2020 04:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39801 * 126.51478 * 2 1 4 4 C 1.35489 * 107.83982 * 179.86783 * 3 2 1 5 5 N 1.34962 * 108.98480 * 0.40606 * 4 3 2 6 6 C 1.46495 * 125.63295 * 179.74945 * 5 4 3 7 7 C 1.50706 * 109.47090 * 264.99598 * 6 5 4 8 8 O 1.21282 * 119.99753 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00104 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46994 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00326 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00498 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00024 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47099 * 89.99961 * 15 13 11 17 17 H 1.48503 * 109.47410 * 209.99900 * 15 13 11 18 18 H 1.48504 * 109.47034 * 330.00152 * 15 13 11 19 19 C 1.37695 * 108.73084 * 359.74262 * 5 4 3 20 20 C 1.46488 * 126.26201 * 179.97438 * 19 5 4 21 21 O 1.21632 * 119.99681 * 180.02562 * 20 19 5 22 22 O 1.34891 * 120.00165 * 0.02562 * 20 19 5 23 23 H 1.09002 * 109.47152 * 269.68338 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.68438 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.68419 * 1 2 3 26 26 H 1.07988 * 126.07835 * 0.02562 * 3 2 1 27 27 H 1.07995 * 125.50871 * 180.15421 * 4 3 2 28 28 H 1.08998 * 109.47894 * 24.99720 * 6 5 4 29 29 H 1.09001 * 109.47140 * 144.99871 * 6 5 4 30 30 H 0.96999 * 120.00231 * 359.97438 * 9 7 6 31 31 H 1.08993 * 109.46922 * 299.99775 * 10 9 7 32 32 H 1.09001 * 109.47058 * 59.99678 * 10 9 7 33 33 H 0.96998 * 120.00151 * 179.97438 * 14 13 11 34 34 H 0.96708 * 116.99988 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1236 0.0000 4 6 3.6224 0.6898 0.0030 5 7 3.6298 -0.6598 -0.0042 6 6 4.8250 -1.5068 -0.0090 7 6 5.1629 -1.8908 -1.4266 8 8 4.4734 -1.4955 -2.3427 9 7 6.2312 -2.6736 -1.6764 10 6 6.5600 -3.0464 -3.0545 11 6 7.7895 -3.9178 -3.0594 12 1 8.2770 -4.1691 -2.1291 13 6 8.2914 -4.3951 -4.2516 14 7 9.3641 -5.1560 -4.2560 15 14 7.4478 -3.9610 -5.8607 16 1 8.0311 -2.7076 -6.4031 17 1 7.6465 -5.0624 -6.8368 18 1 5.9949 -3.7677 -5.6215 19 6 2.3282 -1.1091 -0.0061 20 6 1.8945 -2.5083 -0.0139 21 8 0.7083 -2.7772 -0.0153 22 8 2.8106 -3.4983 -0.0196 23 1 -0.3633 -0.0057 1.0277 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5089 26 1 2.0158 2.1540 0.0004 27 1 4.4982 1.3217 0.0061 28 1 5.6602 -0.9594 0.4279 29 1 4.6349 -2.4068 0.5757 30 1 6.7829 -2.9895 -0.9438 31 1 5.7248 -3.5933 -3.4919 32 1 6.7507 -2.1462 -3.6388 33 1 9.7169 -5.4920 -5.0947 34 1 2.4763 -4.4058 -0.0242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122554818.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:17 Heat of formation + Delta-G solvation = -80.862392 kcal Electronic energy + Delta-G solvation = -19985.021071 eV Core-core repulsion = 16690.863408 eV Total energy + Delta-G solvation = -3294.157663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65750 -39.56286 -38.87987 -36.12504 -34.49123 -33.59893 -32.45996 -30.55257 -29.15785 -27.80262 -25.72662 -23.46385 -22.28989 -20.74869 -20.12845 -19.35030 -18.12844 -17.69356 -17.09351 -16.33378 -15.58934 -15.56325 -15.10448 -14.99745 -14.36948 -13.83708 -13.63585 -13.56026 -13.10422 -13.00087 -12.76112 -12.52834 -12.32537 -12.27882 -11.76903 -11.71444 -11.53241 -11.11575 -10.84094 -10.54493 -10.05138 -9.65530 -9.55835 -8.86622 -8.56098 -8.32418 -8.24613 -6.29190 -4.32376 1.21552 2.50406 2.71412 2.95816 3.04634 3.16646 3.21178 3.28476 3.36475 3.83138 4.26523 4.67044 4.75899 4.99458 5.06167 5.07043 5.14705 5.25681 5.46106 5.67853 5.77268 5.92789 6.05440 6.28674 6.49230 6.67294 6.71895 6.93323 6.95656 7.03035 7.12363 7.27210 7.91458 7.98670 8.35843 8.61883 8.74161 9.30243 10.82534 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.004599 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.841219 B = 6087.150791 C = 6269.986914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.065 4.065 3 C -0.216 4.216 4 C 0.047 3.953 5 N -0.396 5.396 6 C 0.077 3.923 7 C 0.489 3.511 8 O -0.540 6.540 9 N -0.699 5.699 10 C 0.222 3.778 11 C -0.546 4.546 12 H 0.081 0.919 13 C 0.080 3.920 14 N -0.890 5.890 15 Si 0.876 3.124 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.262 1.262 19 C -0.043 4.043 20 C 0.558 3.442 21 O -0.513 6.513 22 O -0.517 6.517 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.146 0.854 27 H 0.171 0.829 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.398 0.602 31 H 0.026 0.974 32 H 0.021 0.979 33 H 0.269 0.731 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 9.066 12.022 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.239 4.239 4 C -0.090 4.090 5 N -0.070 5.070 6 C -0.048 4.048 7 C 0.272 3.728 8 O -0.418 6.418 9 N -0.348 5.348 10 C 0.101 3.899 11 C -0.584 4.584 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.527 5.527 15 Si 0.702 3.298 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.186 1.186 19 C -0.152 4.152 20 C 0.404 3.596 21 O -0.403 6.403 22 O -0.330 6.330 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.164 0.836 27 H 0.188 0.812 28 H 0.138 0.862 29 H 0.146 0.854 30 H 0.232 0.768 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -11.480 9.265 11.212 18.529 hybrid contribution 0.053 -0.652 -0.646 0.919 sum -11.427 8.614 10.566 17.788 Atomic orbital electron populations 1.20360 0.89198 1.03033 1.02103 1.19906 0.95643 0.90511 1.01254 1.20698 0.91469 0.98612 1.13157 1.21934 0.99761 0.82526 1.04731 1.43378 1.04779 1.06072 1.52747 1.21984 0.87269 0.97530 0.98006 1.20461 0.81990 0.80177 0.90184 1.90733 1.50453 1.54825 1.45785 1.46099 1.27554 1.49332 1.11788 1.19520 0.96623 0.95558 0.78247 1.21055 1.10161 1.31500 0.95674 0.90146 1.24778 0.94498 0.94079 0.99111 1.69870 1.21811 1.33464 1.27581 0.86835 0.81060 0.78596 0.83308 1.19788 1.20776 1.18588 1.19012 0.83824 0.90150 1.22196 1.19479 0.83410 0.84563 0.72188 1.90894 1.17664 1.83867 1.47840 1.84630 1.42264 1.19975 1.86109 0.91467 0.90409 0.91655 0.83628 0.81197 0.86182 0.85394 0.76834 0.95620 0.96098 0.92154 0.72627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.83 36.01 0.35 -0.72 16 2 C -0.06 -0.90 6.22 -104.12 -0.65 -1.55 16 3 C -0.22 -2.60 10.76 -39.98 -0.43 -3.03 16 4 C 0.05 0.57 11.33 -17.16 -0.19 0.37 16 5 N -0.40 -5.48 2.23 -114.32 -0.26 -5.73 16 6 C 0.08 0.96 5.88 -5.19 -0.03 0.93 16 7 C 0.49 8.71 7.80 -10.98 -0.09 8.63 16 8 O -0.54 -12.12 16.43 5.56 0.09 -12.03 16 9 N -0.70 -13.11 5.55 -61.47 -0.34 -13.45 16 10 C 0.22 5.28 4.50 -5.19 -0.02 5.26 16 11 C -0.55 -14.47 9.83 -34.44 -0.34 -14.81 16 12 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 14 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 15 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 19 C -0.04 -0.65 6.88 -82.00 -0.56 -1.22 16 20 C 0.56 8.50 8.29 34.05 0.28 8.78 16 21 O -0.51 -8.53 15.60 -19.37 -0.30 -8.83 16 22 O -0.52 -6.55 10.89 -41.01 -0.45 -7.00 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 1.06 6.50 -51.93 -0.34 0.72 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.12 1.05 8.12 -51.93 -0.42 0.62 16 29 H 0.13 1.40 6.46 -51.93 -0.34 1.07 16 30 H 0.40 6.31 8.32 -40.82 -0.34 5.97 16 31 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 32 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.41 3.44 9.11 45.56 0.42 3.85 16 LS Contribution 301.51 15.07 4.54 4.54 Total: -1.00 -35.36 301.51 -5.44 -40.80 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.06 Total: 5.61 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.78 Total: 4.74 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.18 Total: -44.27 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.66 Total: -27.87 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.36 -5.44 -40.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122554818.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.064 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds