Wall clock time and date at job start Mon Mar 30 2020 04:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39801 * 126.51478 * 2 1 4 4 C 1.35489 * 107.83982 * 179.86783 * 3 2 1 5 5 N 1.34962 * 108.98480 * 0.40606 * 4 3 2 6 6 C 1.46495 * 125.63295 * 179.74945 * 5 4 3 7 7 C 1.50706 * 109.47090 * 264.99598 * 6 5 4 8 8 O 1.21282 * 119.99753 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00104 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46994 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00326 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00498 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00024 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47099 * 89.99961 * 15 13 11 17 17 H 1.48503 * 109.47410 * 209.99900 * 15 13 11 18 18 H 1.48504 * 109.47034 * 330.00152 * 15 13 11 19 19 C 1.37695 * 108.73084 * 359.74262 * 5 4 3 20 20 C 1.46488 * 126.26201 * 179.97438 * 19 5 4 21 21 O 1.21632 * 119.99681 * 180.02562 * 20 19 5 22 22 O 1.34891 * 120.00165 * 0.02562 * 20 19 5 23 23 H 1.09002 * 109.47152 * 269.68338 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.68438 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.68419 * 1 2 3 26 26 H 1.07988 * 126.07835 * 0.02562 * 3 2 1 27 27 H 1.07995 * 125.50871 * 180.15421 * 4 3 2 28 28 H 1.08998 * 109.47894 * 24.99720 * 6 5 4 29 29 H 1.09001 * 109.47140 * 144.99871 * 6 5 4 30 30 H 0.96999 * 120.00231 * 359.97438 * 9 7 6 31 31 H 1.08993 * 109.46922 * 299.99775 * 10 9 7 32 32 H 1.09001 * 109.47058 * 59.99678 * 10 9 7 33 33 H 0.96998 * 120.00151 * 179.97438 * 14 13 11 34 34 H 0.96708 * 116.99988 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1236 0.0000 4 6 3.6224 0.6898 0.0030 5 7 3.6298 -0.6598 -0.0042 6 6 4.8250 -1.5068 -0.0090 7 6 5.1629 -1.8908 -1.4266 8 8 4.4734 -1.4955 -2.3427 9 7 6.2312 -2.6736 -1.6764 10 6 6.5600 -3.0464 -3.0545 11 6 7.7895 -3.9178 -3.0594 12 1 8.2770 -4.1691 -2.1291 13 6 8.2914 -4.3951 -4.2516 14 7 9.3641 -5.1560 -4.2560 15 14 7.4478 -3.9610 -5.8607 16 1 8.0311 -2.7076 -6.4031 17 1 7.6465 -5.0624 -6.8368 18 1 5.9949 -3.7677 -5.6215 19 6 2.3282 -1.1091 -0.0061 20 6 1.8945 -2.5083 -0.0139 21 8 0.7083 -2.7772 -0.0153 22 8 2.8106 -3.4983 -0.0196 23 1 -0.3633 -0.0057 1.0277 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5089 26 1 2.0158 2.1540 0.0004 27 1 4.4982 1.3217 0.0061 28 1 5.6602 -0.9594 0.4279 29 1 4.6349 -2.4068 0.5757 30 1 6.7829 -2.9895 -0.9438 31 1 5.7248 -3.5933 -3.4919 32 1 6.7507 -2.1462 -3.6388 33 1 9.7169 -5.4920 -5.0947 34 1 2.4763 -4.4058 -0.0242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122554818.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:16 Heat of formation + Delta-G solvation = -107.321339 kcal Electronic energy + Delta-G solvation = -19986.168417 eV Core-core repulsion = 16690.863408 eV Total energy + Delta-G solvation = -3295.305009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.65374 -40.70643 -40.28598 -37.20601 -36.24010 -34.68033 -34.40246 -31.59246 -30.52025 -29.25551 -26.88499 -24.49485 -24.09762 -21.98199 -21.40378 -20.36409 -19.49142 -19.05167 -18.26337 -17.96267 -16.93849 -16.76482 -16.54242 -16.30121 -15.93943 -15.17664 -14.86278 -14.70250 -14.49029 -14.28055 -14.20018 -13.89919 -13.50922 -13.35862 -13.09495 -12.88228 -12.72245 -12.68115 -12.61042 -11.98104 -11.67797 -11.64270 -11.09877 -10.94105 -10.01372 -9.56030 -9.24575 -8.42017 -6.48684 0.15555 1.29563 1.33091 1.44238 1.48905 1.58091 1.79139 2.04154 2.13948 2.25233 2.50062 2.93668 3.72462 3.80476 3.90600 4.14154 4.18598 4.31296 4.52983 4.74699 4.83309 4.87216 4.98194 5.00021 5.13833 5.23119 5.36331 5.43428 5.51671 5.79183 5.93293 6.05021 6.22161 6.52499 6.74657 6.90839 7.12598 7.31481 8.72451 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.004599 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.841219 B = 6087.150791 C = 6269.986914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.077 4.077 3 C -0.221 4.221 4 C 0.052 3.948 5 N -0.405 5.405 6 C 0.088 3.912 7 C 0.491 3.509 8 O -0.588 6.588 9 N -0.696 5.696 10 C 0.234 3.766 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.030 3.970 14 N -0.929 5.929 15 Si 0.932 3.068 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.266 1.266 19 C -0.083 4.083 20 C 0.554 3.446 21 O -0.540 6.540 22 O -0.516 6.516 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.173 0.827 27 H 0.206 0.794 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.413 0.587 31 H 0.008 0.992 32 H 0.011 0.989 33 H 0.272 0.728 34 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 10.714 12.806 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.245 4.245 4 C -0.084 4.084 5 N -0.079 5.079 6 C -0.036 4.036 7 C 0.277 3.723 8 O -0.469 6.469 9 N -0.346 5.346 10 C 0.111 3.889 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.171 4.171 14 N -0.568 5.568 15 Si 0.757 3.243 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.190 1.190 19 C -0.192 4.192 20 C 0.401 3.599 21 O -0.432 6.432 22 O -0.330 6.330 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.190 0.810 27 H 0.223 0.777 28 H 0.185 0.815 29 H 0.162 0.838 30 H 0.250 0.750 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.082 0.918 34 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -11.527 10.899 12.038 19.914 hybrid contribution 0.078 -1.137 -0.827 1.408 sum -11.450 9.762 11.211 18.763 Atomic orbital electron populations 1.20370 0.88479 1.02841 1.02785 1.20360 0.96576 0.91095 1.00484 1.21098 0.91331 0.99393 1.12628 1.22652 1.01124 0.82121 1.02532 1.43518 1.04417 1.06818 1.53139 1.22072 0.88507 0.99131 0.93920 1.21340 0.80367 0.78493 0.92125 1.90714 1.51738 1.56386 1.48031 1.45879 1.28560 1.49872 1.10299 1.19070 0.94611 0.94283 0.80985 1.21272 1.10655 1.31238 0.95079 0.91693 1.25523 0.95064 0.94149 1.02319 1.69964 1.23293 1.34877 1.28616 0.85939 0.79693 0.78807 0.79900 1.18916 1.19910 1.19018 1.19269 0.85048 0.90389 1.24452 1.19669 0.83293 0.85200 0.71708 1.90870 1.18605 1.84348 1.49375 1.84582 1.41843 1.20907 1.85682 0.90294 0.92644 0.89716 0.80980 0.77690 0.81458 0.83757 0.75046 0.97439 0.97069 0.91832 0.70766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.02 9.83 71.24 0.70 -1.32 16 2 C -0.08 -2.03 6.22 -19.54 -0.12 -2.15 16 3 C -0.22 -4.72 10.76 22.01 0.24 -4.48 16 4 C 0.05 1.07 11.33 83.58 0.95 2.02 16 5 N -0.40 -10.17 2.23 -515.61 -1.15 -11.32 16 6 C 0.09 1.92 5.88 85.64 0.50 2.42 16 7 C 0.49 16.60 7.80 87.66 0.68 17.29 16 8 O -0.59 -25.88 16.43 -3.04 -0.05 -25.93 16 9 N -0.70 -25.12 5.55 -466.79 -2.59 -27.71 16 10 C 0.23 11.01 4.50 85.63 0.38 11.40 16 11 C -0.54 -28.82 9.83 25.60 0.25 -28.57 16 12 H 0.06 3.56 7.84 -2.91 -0.02 3.54 16 13 C 0.03 1.66 5.47 84.65 0.46 2.12 16 14 N -0.93 -54.13 13.96 21.45 0.30 -53.84 16 15 Si 0.93 43.42 27.47 68.60 1.88 45.30 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.27 -12.45 6.54 99.48 0.65 -11.80 16 19 C -0.08 -2.46 6.88 40.32 0.28 -2.18 16 20 C 0.55 16.79 8.29 69.97 0.58 17.38 16 21 O -0.54 -18.28 15.60 19.40 0.30 -17.98 16 22 O -0.52 -12.69 10.89 -58.05 -0.63 -13.33 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.53 6.50 -2.39 -0.02 1.51 16 25 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.17 2.60 8.06 -2.92 -0.02 2.57 16 27 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.17 2.08 8.12 -2.39 -0.02 2.06 16 29 H 0.14 2.72 6.46 -2.39 -0.02 2.71 16 30 H 0.41 12.33 8.32 -92.71 -0.77 11.56 16 31 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 32 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.43 6.92 9.11 -74.05 -0.67 6.24 16 Total: -1.00 -77.24 301.51 2.62 -74.61 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.35 Total: 16.26 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 4.91 Total: 13.93 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -3.44 Total: -92.86 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -0.38 Total: -57.24 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.30 kcal Total: -77.24 2.62 -74.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122554818.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.710 kcal (2) G-P(sol) polarization free energy of solvation -77.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds