Wall clock time and date at job start Mon Mar 30 2020 05:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99517 * 3 2 1 5 5 H 1.48496 * 109.46939 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47298 * 119.99533 * 3 2 1 7 7 C 1.39587 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99783 * 180.02562 * 7 2 1 9 9 N 1.36116 * 119.99728 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99914 * 179.97438 * 9 7 2 11 11 O 1.21503 * 119.99876 * 0.02562 * 10 9 7 12 12 C 1.48832 * 119.99874 * 180.02562 * 10 9 7 13 13 O 1.21439 * 120.00192 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99874 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00165 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.46993 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46969 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.47035 * 179.97438 * 17 16 15 19 19 C 1.34944 * 126.03372 * 125.00124 * 18 17 16 20 20 C 1.35317 * 107.74658 * 179.97438 * 19 18 17 21 21 C 1.39871 * 107.91935 * 0.02562 * 20 19 18 22 22 N 1.30845 * 108.20108 * 359.74200 * 21 20 19 23 23 H 0.97002 * 119.99942 * 0.02562 * 1 2 3 24 24 H 0.97004 * 120.00613 * 0.02562 * 9 7 2 25 25 H 0.97010 * 119.99926 * 0.02562 * 14 12 10 26 26 H 1.08992 * 109.46764 * 60.00078 * 15 14 12 27 27 H 1.08996 * 109.46739 * 299.99985 * 15 14 12 28 28 H 1.09004 * 109.47298 * 60.00068 * 16 15 14 29 29 H 1.09004 * 109.47552 * 299.99940 * 16 15 14 30 30 H 1.09004 * 109.46930 * 59.99996 * 17 16 15 31 31 H 1.09000 * 109.47312 * 299.99939 * 17 16 15 32 32 H 1.08001 * 126.12891 * 0.02562 * 19 18 17 33 33 H 1.08002 * 126.04160 * 179.97438 * 20 19 18 34 34 H 1.07995 * 125.90070 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0980 1.6964 -1.2125 5 1 1.2791 2.7464 -0.0006 6 1 3.0977 1.6965 1.2125 7 6 2.0081 -1.2089 0.0005 8 1 3.0880 -1.2088 0.0010 9 7 1.3274 -2.3876 0.0005 10 6 2.0013 -3.5549 0.0005 11 8 3.2163 -3.5549 0.0010 12 6 1.2571 -4.8438 0.0000 13 8 0.0427 -4.8437 -0.0010 14 7 1.9310 -6.0110 -0.0006 15 6 1.1985 -7.2797 -0.0017 16 6 2.1927 -8.4426 -0.0014 17 6 1.4277 -9.7676 -0.0020 18 7 2.3798 -10.8812 -0.0024 19 6 2.4198 -11.8916 0.8911 20 6 3.4396 -12.7101 0.5427 21 6 4.0437 -12.1814 -0.6026 22 7 3.4059 -11.0878 -0.9333 23 1 -0.4850 0.8401 -0.0004 24 1 0.3574 -2.3877 -0.0002 25 1 2.9011 -6.0110 -0.0002 26 1 0.5722 -7.3368 -0.8919 27 1 0.5715 -7.3380 0.8880 28 1 2.8187 -8.3853 0.8891 29 1 2.8201 -8.3845 -0.8909 30 1 0.8014 -9.8252 -0.8923 31 1 0.8007 -9.8255 0.8877 32 1 1.7564 -12.0239 1.7330 33 1 3.7353 -13.6118 1.0584 34 1 4.8881 -12.6048 -1.1260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127148160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:35 Heat of formation + Delta-G solvation = 1.337629 kcal Electronic energy + Delta-G solvation = -18713.999268 eV Core-core repulsion = 15455.698817 eV Total energy + Delta-G solvation = -3258.300452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -41.32146 -39.52452 -37.35994 -35.97590 -34.39675 -33.52730 -31.44847 -30.78442 -29.94314 -26.55961 -25.42367 -23.09299 -21.87273 -21.24392 -20.78529 -19.39495 -18.34686 -17.55318 -16.91957 -16.09786 -15.89382 -15.14116 -15.03799 -14.59728 -14.47670 -14.13034 -13.93082 -13.75144 -13.11588 -12.90896 -12.78567 -12.49197 -12.23698 -11.85079 -11.78110 -11.28135 -11.17979 -10.80753 -10.60079 -10.47418 -10.37479 -9.72732 -9.66252 -8.84291 -8.82271 -8.30836 -8.24711 -6.69105 -4.01366 1.67813 2.25196 2.41132 2.64031 3.14367 3.16296 3.17138 3.36137 4.03510 4.22602 4.25602 4.55126 4.62989 4.72235 4.84906 4.99599 5.07724 5.14752 5.19150 5.34260 5.50194 5.53655 5.76873 5.84005 5.92085 6.04886 6.42391 6.68429 6.77771 7.28981 7.48759 7.64587 7.83216 8.29628 8.57940 8.93671 9.29306 9.82811 10.45643 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.057997 B = 0.002761 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.666371 B =10137.718526 C =10485.699512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.498 5.498 10 C 0.393 3.607 11 O -0.598 6.598 12 C 0.514 3.486 13 O -0.547 6.547 14 N -0.715 5.715 15 C 0.124 3.876 16 C -0.144 4.144 17 C 0.137 3.863 18 N -0.371 5.371 19 C 0.053 3.947 20 C -0.278 4.278 21 C 0.041 3.959 22 N -0.293 5.293 23 H 0.281 0.719 24 H 0.405 0.595 25 H 0.411 0.589 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.146 0.854 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -20.309 1.859 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.132 5.132 10 C 0.177 3.823 11 O -0.487 6.487 12 C 0.299 3.701 13 O -0.424 6.424 14 N -0.370 5.370 15 C -0.001 4.001 16 C -0.182 4.182 17 C 0.015 3.985 18 N -0.153 5.153 19 C -0.093 4.093 20 C -0.308 4.308 21 C -0.145 4.145 22 N -0.114 5.114 23 H 0.092 0.908 24 H 0.240 0.760 25 H 0.247 0.753 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.190 0.810 33 H 0.164 0.836 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.515 -19.066 1.034 19.154 hybrid contribution 0.252 -0.024 0.657 0.704 sum 1.767 -19.091 1.691 19.247 Atomic orbital electron populations 1.69475 1.06530 1.29510 1.45135 1.25597 0.95640 1.00506 0.95844 0.85767 0.78873 0.79253 0.79543 1.19345 1.20574 1.19353 1.19843 0.93978 0.81881 1.47996 0.86996 1.41559 1.10492 1.04222 1.56935 1.18927 0.87815 0.84188 0.91363 1.90585 1.12873 1.86587 1.58616 1.20701 0.87476 0.85877 0.76079 1.90687 1.14050 1.88124 1.49491 1.45606 1.11211 1.04487 1.75696 1.21144 0.94170 0.82122 1.02625 1.22052 0.99079 0.92285 1.04833 1.21642 0.89110 0.83261 1.04442 1.48773 1.25659 1.19952 1.20902 1.22610 1.00487 0.90030 0.96218 1.21521 1.01733 1.05069 1.02477 1.23917 1.00057 0.93668 0.96851 1.77393 1.01326 1.19274 1.13426 0.90827 0.75984 0.75300 0.91175 0.91324 0.90476 0.89446 0.89195 0.88125 0.80974 0.83650 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.21 13.03 55.53 0.72 -22.49 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.05 29.56 -169.99 -5.02 15.03 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.31 -8.45 9.67 -15.15 -0.15 -8.59 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 9 N -0.50 -13.33 5.25 -11.59 -0.06 -13.39 16 10 C 0.39 9.90 7.82 -11.87 -0.09 9.81 16 11 O -0.60 -16.08 16.03 5.36 0.09 -16.00 16 12 C 0.51 11.06 7.87 -11.87 -0.09 10.97 16 13 O -0.55 -12.61 16.47 5.42 0.09 -12.52 16 14 N -0.72 -11.93 5.55 -60.94 -0.34 -12.27 16 15 C 0.12 1.54 5.67 -4.04 -0.02 1.51 16 16 C -0.14 -1.42 5.52 -26.73 -0.15 -1.57 16 17 C 0.14 1.10 6.51 -4.04 -0.03 1.07 16 18 N -0.37 -3.69 3.68 -61.36 -0.23 -3.92 16 19 C 0.05 0.43 11.45 -17.22 -0.20 0.23 16 20 C -0.28 -2.33 10.80 -40.01 -0.43 -2.76 16 21 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 22 N -0.29 -3.50 12.42 30.63 0.38 -3.12 16 23 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 24 H 0.40 10.88 7.35 -40.82 -0.30 10.58 16 25 H 0.41 6.59 7.93 -40.82 -0.32 6.26 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -33.25 309.83 -5.10 -38.35 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -3.93 Total: 14.08 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -1.46 Total: 11.58 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.48 Total: -55.19 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: 0.18 Total: -28.52 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.25 -5.10 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127148160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.688 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds