Wall clock time and date at job start Mon Mar 30 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.38982 * 119.99834 * 2 1 4 4 C 1.39002 * 119.66235 * 0.02562 * 3 2 1 5 5 C 1.38513 * 119.25988 * 179.97438 * 4 3 2 6 6 C 1.38550 * 118.59102 * 359.97438 * 5 4 3 7 7 N 1.48007 * 120.37048 * 180.02562 * 6 5 4 8 8 O 1.21798 * 119.99757 * 354.42384 * 7 6 5 9 9 O 1.21793 * 119.99881 * 174.42778 * 7 6 5 10 10 C 1.38960 * 119.25929 * 0.02562 * 6 5 4 11 11 N 1.38995 * 119.65627 * 179.97438 * 10 6 5 12 12 C 1.46905 * 110.99668 * 248.52004 * 11 10 6 13 13 C 1.46894 * 111.00078 * 124.57086 * 11 10 6 14 14 C 1.50703 * 109.47034 * 189.99658 * 13 11 10 15 15 H 1.07998 * 120.00351 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99791 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00447 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99981 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47119 * 60.00322 * 18 16 14 20 20 H 1.48492 * 109.47262 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47069 * 300.00263 * 18 16 14 22 22 N 1.32471 * 119.65956 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47094 * 300.00610 * 1 2 3 24 24 H 1.09005 * 109.46462 * 60.00421 * 1 2 3 25 25 H 1.08999 * 109.47024 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99708 * 179.97438 * 2 1 3 27 27 H 1.07997 * 120.37233 * 359.95413 * 4 3 2 28 28 H 1.08006 * 120.70419 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47118 * 64.57443 * 12 11 10 30 30 H 1.08997 * 109.47017 * 184.56953 * 12 11 10 31 31 H 1.09004 * 109.47059 * 304.57199 * 12 11 10 32 32 H 1.08999 * 109.46989 * 309.99214 * 13 11 10 33 33 H 1.08995 * 109.47826 * 69.99617 * 13 11 10 34 34 H 0.97002 * 120.00308 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1600 1.2036 0.0000 4 6 1.4578 2.4033 0.0005 5 6 2.1588 3.5980 0.0011 6 6 3.5436 3.5542 0.0016 7 7 4.3318 4.8069 0.0028 8 8 3.7676 5.8815 -0.0992 9 8 5.5446 4.7631 0.1056 10 6 4.1841 2.3211 0.0010 11 7 5.5731 2.2675 0.0010 12 6 6.0797 1.7460 -1.2755 13 6 6.0691 1.4692 1.1299 14 6 7.5629 1.6333 1.2431 15 1 8.0910 2.2669 0.5460 16 6 8.2554 0.9744 2.2368 17 7 7.6125 0.2024 3.0855 18 14 10.1070 1.1784 2.3777 19 1 10.4316 2.6099 2.6028 20 1 10.6085 0.3712 3.5187 21 1 10.7528 0.7158 1.1230 22 7 3.4846 1.1958 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.9500 -0.8401 0.0004 27 1 0.3779 2.4039 0.0002 28 1 1.6369 4.5436 0.0019 29 1 5.8244 2.4383 -2.0778 30 1 7.1629 1.6382 -1.2196 31 1 5.6277 0.7746 -1.4762 32 1 5.5955 1.8088 2.0509 33 1 5.8306 0.4186 0.9646 34 1 8.0997 -0.2608 3.7848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127268852.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:08 Heat of formation + Delta-G solvation = 63.899150 kcal Electronic energy + Delta-G solvation = -20410.675670 eV Core-core repulsion = 17155.088090 eV Total energy + Delta-G solvation = -3255.587580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53853 -40.28590 -37.29963 -35.73390 -35.21850 -32.76180 -32.34960 -30.11265 -27.36880 -27.17391 -25.56881 -24.81956 -23.34151 -21.87507 -20.71148 -18.67697 -18.42469 -17.60449 -16.80855 -16.68782 -16.30759 -15.22365 -15.07090 -14.86377 -14.59138 -13.90713 -13.61204 -13.54851 -13.05123 -12.93354 -12.56223 -12.02566 -11.48007 -10.95910 -10.87576 -10.80267 -10.68973 -10.58755 -10.41991 -10.30576 -10.13128 -9.77695 -9.63449 -9.25450 -8.46094 -8.15874 -7.70834 -6.02406 -4.03659 0.41893 1.06514 1.93920 2.09785 2.84610 3.38244 3.41414 3.45994 3.61649 4.07658 4.48477 4.51360 4.68136 4.68853 4.87716 5.04418 5.24577 5.29961 5.35045 5.50897 5.63756 5.83420 6.03229 6.17168 6.60978 6.63372 7.00533 7.09869 7.16425 7.28272 7.72057 7.82002 7.92800 8.05538 8.41933 8.47221 9.02626 9.59637 11.08687 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.018339 B = 0.006531 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.405484 B = 4286.229161 C = 5385.175220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.717 5.717 3 C 0.447 3.553 4 C -0.257 4.257 5 C 0.027 3.973 6 C -0.145 4.145 7 N 0.044 4.956 8 O -0.231 6.231 9 O -0.086 6.086 10 C 0.441 3.559 11 N -0.483 5.483 12 C 0.045 3.955 13 C 0.205 3.795 14 C -0.506 4.506 15 H 0.071 0.929 16 C 0.057 3.943 17 N -0.900 5.900 18 Si 0.903 3.097 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.276 1.276 22 N -0.557 5.557 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.412 0.588 27 H 0.147 0.853 28 H 0.158 0.842 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.012 0.988 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 -0.237 -7.410 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.348 5.348 3 C 0.207 3.793 4 C -0.282 4.282 5 C 0.000 4.000 6 C -0.236 4.236 7 N 0.562 4.438 8 O -0.426 6.426 9 O -0.320 6.320 10 C 0.208 3.792 11 N -0.207 5.207 12 C -0.101 4.101 13 C 0.083 3.917 14 C -0.545 4.545 15 H 0.089 0.911 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.730 3.270 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.202 1.202 22 N -0.280 5.280 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.248 0.752 27 H 0.165 0.835 28 H 0.176 0.824 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.801 -1.164 -7.210 17.408 hybrid contribution 0.467 -0.098 0.257 0.542 sum -15.335 -1.262 -6.953 16.885 Atomic orbital electron populations 1.21716 0.78456 1.03396 1.01788 1.44504 1.06204 1.05574 1.78485 1.18614 0.88162 0.86737 0.85773 1.21250 1.01246 0.90241 1.15472 1.21064 0.90743 1.00009 0.88140 1.21626 0.91891 0.85355 1.24740 1.43057 1.01626 1.01332 0.97784 1.94437 1.73726 1.16975 1.57469 1.94692 0.94549 1.93749 1.49031 1.19898 0.92493 0.85039 0.81767 1.60851 0.97853 1.55278 1.06705 1.22247 1.02894 0.96618 0.88361 1.19801 0.96024 0.90485 0.85433 1.21072 0.90977 1.27769 1.14647 0.91111 1.24971 0.98944 0.95107 0.95458 1.69963 1.36054 1.30339 1.17566 0.86477 0.84685 0.78366 0.77423 1.19872 1.21495 1.20184 1.67944 1.06200 1.30769 1.23068 0.92081 0.92152 0.89885 0.75202 0.83544 0.82439 0.93500 0.88658 0.95219 0.95628 0.97018 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 9.92 59.85 0.59 1.15 16 2 N -0.72 -7.56 5.88 -67.23 -0.40 -7.96 16 3 C 0.45 6.40 7.65 -155.03 -1.19 5.21 16 4 C -0.26 -3.12 9.32 -39.20 -0.37 -3.49 16 5 C 0.03 0.38 9.66 -39.36 -0.38 0.00 16 6 C -0.14 -2.71 6.88 -79.57 -0.55 -3.26 16 7 N 0.04 0.90 4.45 34.15 0.15 1.05 16 8 O -0.23 -4.55 18.53 -29.46 -0.55 -5.10 16 9 O -0.09 -1.98 17.14 -29.46 -0.50 -2.49 16 10 C 0.44 9.00 5.29 -155.01 -0.82 8.18 16 11 N -0.48 -11.01 2.63 -182.46 -0.48 -11.49 16 12 C 0.05 0.91 9.41 60.07 0.57 1.47 16 13 C 0.21 5.48 4.39 -4.98 -0.02 5.46 16 14 C -0.51 -14.27 8.39 -34.44 -0.29 -14.56 16 15 H 0.07 1.96 7.16 -52.49 -0.38 1.58 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 18 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 N -0.56 -10.34 9.67 -11.63 -0.11 -10.45 16 23 H 0.06 0.35 7.92 -51.93 -0.41 -0.07 16 24 H 0.06 0.31 7.92 -51.93 -0.41 -0.10 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.41 4.27 8.95 -40.82 -0.37 3.91 16 27 H 0.15 1.20 6.69 -52.49 -0.35 0.85 16 28 H 0.16 1.82 7.70 -52.48 -0.40 1.41 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.97 6.67 -51.93 -0.35 1.62 16 31 H 0.03 0.57 7.91 -51.93 -0.41 0.16 16 32 H 0.03 0.75 8.06 -51.93 -0.42 0.34 16 33 H 0.01 0.34 8.03 -51.93 -0.42 -0.08 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -33.24 300.41 -8.08 -41.32 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -3.89 Total: -1.76 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.55 Total: 1.68 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.10 Total: -54.97 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -1.05 Total: -7.58 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.24 -8.08 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127268852.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.222 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds