Wall clock time and date at job start Mon Mar 30 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.50707 * 109.47162 * 269.99844 * 3 2 1 5 5 H 1.07998 * 119.99576 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99930 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47235 * 59.99855 * 8 6 4 10 10 H 1.48500 * 109.47168 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47142 * 299.99797 * 8 6 4 12 12 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00423 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99795 * 0.02562 * 12 2 1 15 15 N 1.46499 * 109.46992 * 179.97438 * 14 12 2 16 16 C 1.34263 * 125.75372 * 125.00175 * 15 14 12 17 17 C 1.38042 * 107.41991 * 180.02562 * 16 15 14 18 18 C 1.47429 * 126.41673 * 180.02562 * 17 16 15 19 19 N 1.34770 * 120.00088 * 179.97438 * 18 17 16 20 20 O 1.21609 * 119.99594 * 359.97438 * 18 17 16 21 21 C 1.41290 * 107.17098 * 359.97438 * 17 16 15 22 22 N 1.30458 * 108.02019 * 359.72283 * 21 17 16 23 23 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 24 24 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 25 25 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 26 26 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 27 27 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 28 28 H 0.97001 * 119.99961 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47060 * 299.99722 * 14 12 2 30 30 H 1.09001 * 109.47380 * 59.99809 * 14 12 2 31 31 H 1.08007 * 126.28734 * 359.97438 * 16 15 14 32 32 H 0.97005 * 119.99938 * 359.97438 * 19 18 17 33 33 H 0.97000 * 120.00291 * 179.97438 * 19 18 17 34 34 H 1.07997 * 125.98939 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5525 3.6184 -0.6732 8 14 3.4368 3.4174 -3.4339 9 1 2.1390 3.5946 -4.1337 10 1 4.1784 4.7039 -3.4340 11 1 4.2396 2.3828 -4.1343 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0001 14 6 1.3853 -2.4723 0.0005 15 7 2.3373 -3.5858 0.0005 16 6 2.3721 -4.5882 0.8930 17 6 3.4132 -5.4220 0.5377 18 6 3.8245 -6.6545 1.2345 19 7 4.8659 -7.3744 0.7724 20 8 3.2239 -7.0214 2.2262 21 6 4.0103 -4.8738 -0.6196 22 7 3.3598 -3.7874 -0.9333 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0283 0.5137 27 1 3.1499 1.1384 0.5139 28 1 4.0288 4.4447 -0.8504 29 1 0.7583 -2.5299 0.8903 30 1 0.7589 -2.5303 -0.8897 31 1 1.7079 -4.7179 1.7349 32 1 5.3447 -7.0818 -0.0189 33 1 5.1367 -8.1850 1.2310 34 1 4.8540 -5.2850 -1.1539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129431594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:29 Heat of formation + Delta-G solvation = 11.194862 kcal Electronic energy + Delta-G solvation = -19535.068853 eV Core-core repulsion = 16277.195843 eV Total energy + Delta-G solvation = -3257.873010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.38389 -39.16852 -38.65774 -34.98452 -33.92744 -33.17443 -32.54937 -30.26545 -28.69447 -27.17342 -25.74615 -23.33415 -22.84856 -21.12427 -20.15615 -18.81196 -17.91428 -17.00305 -16.71138 -16.55266 -15.95895 -15.27055 -15.15983 -14.83329 -14.47460 -14.09930 -13.90085 -13.71347 -13.00073 -12.80495 -12.67319 -12.28893 -11.98938 -11.95182 -11.26694 -11.00941 -10.94679 -10.62721 -10.21303 -9.94966 -9.81841 -9.77021 -9.69747 -9.06065 -8.62157 -8.47916 -7.79910 -6.09247 -4.14474 1.52361 2.21231 2.33366 3.13371 3.29522 3.34167 3.38123 3.48370 3.60103 3.73227 4.39138 4.49862 4.68203 4.83580 4.89458 5.03325 5.09701 5.25579 5.39620 5.49150 5.69225 5.76394 6.07151 6.39534 6.70842 6.71607 6.94384 7.28177 7.32813 7.40464 7.63721 7.86096 8.15653 8.20944 8.26865 8.77898 8.92971 9.50769 10.98951 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031177 B = 0.004046 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.876576 B = 6918.485917 C = 7383.654750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.599 5.599 3 C 0.248 3.752 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.491 3.509 13 O -0.510 6.510 14 C 0.106 3.894 15 N -0.339 5.339 16 C 0.130 3.870 17 C -0.306 4.306 18 C 0.605 3.395 19 N -0.854 5.854 20 O -0.561 6.561 21 C 0.069 3.931 22 N -0.254 5.254 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.187 0.813 32 H 0.400 0.600 33 H 0.402 0.598 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 -16.988 1.522 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.333 5.333 3 C 0.129 3.871 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.275 3.725 13 O -0.385 6.385 14 C -0.018 4.018 15 N -0.117 5.117 16 C -0.022 4.022 17 C -0.322 4.322 18 C 0.392 3.608 19 N -0.417 5.417 20 O -0.440 6.440 21 C -0.121 4.121 22 N -0.072 5.072 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.204 0.796 32 H 0.229 0.771 33 H 0.232 0.768 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.638 -15.729 1.344 16.453 hybrid contribution 0.536 -0.362 -0.646 0.914 sum -4.102 -16.091 0.699 16.620 Atomic orbital electron populations 1.21725 0.81204 1.02947 1.00721 1.48155 1.06257 1.07487 1.71396 1.19325 0.92527 0.77570 0.97695 1.21373 1.36925 1.06366 0.92158 0.92443 1.24932 0.95213 0.96335 0.97549 1.69919 1.38222 1.14336 1.30867 0.86536 0.78404 0.77847 0.84520 1.20212 1.21128 1.20108 1.20053 0.88497 0.84685 0.79305 1.90769 1.13149 1.86338 1.48225 1.21854 0.89662 0.84419 1.05912 1.48059 1.24788 1.18407 1.20435 1.22942 0.97741 0.87420 0.94074 1.20061 1.05284 1.02635 1.04187 1.17239 0.79058 0.81983 0.82536 1.43590 1.34928 1.29455 1.33693 1.90793 1.55262 1.71320 1.26630 1.24034 0.99543 0.92961 0.95527 1.77445 0.99983 1.17088 1.12701 0.93299 0.90220 0.92556 0.94718 0.93827 0.92580 0.85917 0.86674 0.79602 0.77120 0.76768 0.79642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.24 59.84 0.61 1.69 16 2 N -0.60 -11.94 2.86 -182.96 -0.52 -12.46 16 3 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 4 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.49 9.72 7.70 -10.98 -0.08 9.64 16 13 O -0.51 -12.83 15.29 5.56 0.08 -12.74 16 14 C 0.11 1.42 5.52 -5.19 -0.03 1.39 16 15 N -0.34 -5.09 3.37 -61.98 -0.21 -5.30 16 16 C 0.13 1.69 11.25 -16.56 -0.19 1.51 16 17 C -0.31 -4.00 6.13 -105.07 -0.64 -4.64 16 18 C 0.60 7.58 8.09 -12.52 -0.10 7.48 16 19 N -0.85 -6.82 8.87 30.43 0.27 -6.55 16 20 O -0.56 -8.97 17.73 5.27 0.09 -8.87 16 21 C 0.07 0.90 11.50 -16.98 -0.20 0.71 16 22 N -0.25 -4.31 11.56 30.86 0.36 -3.96 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 25 H 0.06 0.58 6.44 -51.93 -0.33 0.24 16 26 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 27 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.12 1.10 8.03 -51.93 -0.42 0.68 16 30 H 0.12 1.29 7.40 -51.93 -0.38 0.91 16 31 H 0.19 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.40 2.15 7.78 -40.82 -0.32 1.83 16 33 H 0.40 2.58 8.93 -40.82 -0.36 2.21 16 34 H 0.19 1.64 7.50 -52.49 -0.39 1.24 16 LS Contribution 306.22 15.07 4.61 4.61 Total: -1.00 -38.92 306.22 -4.50 -43.42 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.83 Total: 0.23 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -1.07 Total: 10.55 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.63 Total: -53.96 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.18 Total: -21.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -38.92 -4.50 -43.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129431594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.610 kcal (2) G-P(sol) polarization free energy of solvation -38.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds