Wall clock time and date at job start Mon Mar 30 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.50707 * 109.47162 * 269.99844 * 3 2 1 5 5 H 1.07998 * 119.99576 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99930 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47235 * 59.99855 * 8 6 4 10 10 H 1.48500 * 109.47168 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47142 * 299.99797 * 8 6 4 12 12 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00423 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99795 * 0.02562 * 12 2 1 15 15 N 1.46499 * 109.46992 * 179.97438 * 14 12 2 16 16 C 1.34263 * 125.75372 * 125.00175 * 15 14 12 17 17 C 1.38042 * 107.41991 * 180.02562 * 16 15 14 18 18 C 1.47429 * 126.41673 * 180.02562 * 17 16 15 19 19 N 1.34770 * 120.00088 * 179.97438 * 18 17 16 20 20 O 1.21609 * 119.99594 * 359.97438 * 18 17 16 21 21 C 1.41290 * 107.17098 * 359.97438 * 17 16 15 22 22 N 1.30458 * 108.02019 * 359.72283 * 21 17 16 23 23 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 24 24 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 25 25 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 26 26 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 27 27 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 28 28 H 0.97001 * 119.99961 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47060 * 299.99722 * 14 12 2 30 30 H 1.09001 * 109.47380 * 59.99809 * 14 12 2 31 31 H 1.08007 * 126.28734 * 359.97438 * 16 15 14 32 32 H 0.97005 * 119.99938 * 359.97438 * 19 18 17 33 33 H 0.97000 * 120.00291 * 179.97438 * 19 18 17 34 34 H 1.07997 * 125.98939 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5525 3.6184 -0.6732 8 14 3.4368 3.4174 -3.4339 9 1 2.1390 3.5946 -4.1337 10 1 4.1784 4.7039 -3.4340 11 1 4.2396 2.3828 -4.1343 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0001 14 6 1.3853 -2.4723 0.0005 15 7 2.3373 -3.5858 0.0005 16 6 2.3721 -4.5882 0.8930 17 6 3.4132 -5.4220 0.5377 18 6 3.8245 -6.6545 1.2345 19 7 4.8659 -7.3744 0.7724 20 8 3.2239 -7.0214 2.2262 21 6 4.0103 -4.8738 -0.6196 22 7 3.3598 -3.7874 -0.9333 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0283 0.5137 27 1 3.1499 1.1384 0.5139 28 1 4.0288 4.4447 -0.8504 29 1 0.7583 -2.5299 0.8903 30 1 0.7589 -2.5303 -0.8897 31 1 1.7079 -4.7179 1.7349 32 1 5.3447 -7.0818 -0.0189 33 1 5.1367 -8.1850 1.2310 34 1 4.8540 -5.2850 -1.1539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129431594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:21 Heat of formation + Delta-G solvation = -21.368553 kcal Electronic energy + Delta-G solvation = -19536.480909 eV Core-core repulsion = 16277.195843 eV Total energy + Delta-G solvation = -3259.285066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 6.48 seconds Orbital eigenvalues (eV) -42.41349 -40.57367 -39.75930 -36.65207 -34.99872 -34.70134 -34.00921 -31.30539 -30.32619 -28.50618 -27.22398 -24.96543 -24.03528 -22.30608 -21.13490 -20.15863 -18.90047 -18.73218 -18.14909 -17.76925 -17.14863 -16.82899 -16.39783 -16.11393 -15.96922 -15.31156 -15.08652 -14.75857 -14.45724 -14.13178 -13.83895 -13.74066 -13.48612 -13.27471 -13.14687 -12.79076 -12.55778 -12.21478 -12.04303 -11.74750 -11.06990 -10.98214 -10.66444 -10.60316 -10.41717 -9.67037 -9.46887 -8.24919 -6.39711 0.53629 1.21042 1.34782 1.35460 1.39524 1.46631 1.69645 2.27257 2.40412 2.53206 2.80001 3.05079 3.47331 3.66824 3.80018 4.01382 4.08016 4.21669 4.41139 4.49801 4.74394 4.79505 4.95362 5.00569 5.19322 5.44954 5.51532 5.75121 5.83240 6.00460 6.02873 6.51279 6.64293 6.65609 6.71850 7.24461 7.39625 7.44621 8.81989 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031177 B = 0.004046 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.876576 B = 6918.485917 C = 7383.654750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.606 5.606 3 C 0.262 3.738 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.966 3.034 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.480 3.520 13 O -0.578 6.578 14 C 0.118 3.882 15 N -0.351 5.351 16 C 0.132 3.868 17 C -0.318 4.318 18 C 0.604 3.396 19 N -0.832 5.832 20 O -0.600 6.600 21 C 0.078 3.922 22 N -0.316 5.316 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.028 0.972 27 H -0.006 1.006 28 H 0.267 0.733 29 H 0.175 0.825 30 H 0.144 0.856 31 H 0.216 0.784 32 H 0.415 0.585 33 H 0.412 0.588 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 -18.533 0.736 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.338 5.338 3 C 0.140 3.860 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.206 1.206 12 C 0.267 3.733 13 O -0.457 6.457 14 C -0.006 4.006 15 N -0.129 5.129 16 C -0.019 4.019 17 C -0.333 4.333 18 C 0.391 3.609 19 N -0.395 5.395 20 O -0.483 6.483 21 C -0.111 4.111 22 N -0.134 5.134 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.046 0.954 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.193 0.807 30 H 0.161 0.839 31 H 0.233 0.767 32 H 0.246 0.754 33 H 0.244 0.756 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.092 -17.305 0.532 18.354 hybrid contribution 1.008 0.064 -0.356 1.071 sum -5.084 -17.241 0.176 17.976 Atomic orbital electron populations 1.22091 0.77138 1.04584 1.03313 1.48145 1.08725 1.05866 1.71111 1.18733 0.91042 0.80285 0.95908 1.21685 1.36990 1.06494 0.93122 0.92852 1.25853 0.94877 0.96476 1.01941 1.70040 1.38915 1.14795 1.33095 0.85487 0.78933 0.77291 0.79230 1.18223 1.20319 1.20586 1.21192 0.88187 0.86522 0.77386 1.90730 1.16347 1.87564 1.51039 1.22007 0.88766 0.80085 1.09719 1.48150 1.25003 1.19078 1.20669 1.23502 0.97858 0.86613 0.93939 1.20278 1.05587 1.03089 1.04370 1.17236 0.79603 0.81999 0.82041 1.43404 1.33366 1.29015 1.33713 1.90774 1.56902 1.72288 1.28344 1.24612 0.99504 0.91663 0.95291 1.77371 1.01960 1.19115 1.14962 0.90157 0.91461 0.88091 0.95410 0.98813 0.92381 0.80739 0.83890 0.76747 0.75391 0.75555 0.76378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 10.24 127.77 1.31 3.05 16 2 N -0.61 -23.98 2.86 -851.14 -2.43 -26.41 16 3 C 0.26 13.88 5.16 85.64 0.44 14.32 16 4 C -0.54 -31.25 9.39 25.60 0.24 -31.01 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.44 5.46 84.65 0.46 0.90 16 7 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 8 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 C 0.48 18.88 7.70 87.66 0.67 19.55 16 13 O -0.58 -30.12 15.29 -3.03 -0.05 -30.17 16 14 C 0.12 2.82 5.52 85.63 0.47 3.29 16 15 N -0.35 -9.92 3.37 -350.02 -1.18 -11.10 16 16 C 0.13 3.17 11.25 84.27 0.95 4.11 16 17 C -0.32 -7.79 6.13 -20.15 -0.12 -7.91 16 18 C 0.60 14.13 8.09 86.67 0.70 14.83 16 19 N -0.83 -11.46 8.87 -175.89 -1.56 -13.02 16 20 O -0.60 -18.46 17.73 -4.06 -0.07 -18.53 16 21 C 0.08 1.95 11.50 85.65 0.99 2.94 16 22 N -0.32 -10.53 11.56 -56.27 -0.65 -11.18 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 1.86 8.07 -2.38 -0.02 1.84 16 25 H 0.10 1.61 6.44 -2.39 -0.02 1.59 16 26 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 27 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.18 2.27 8.03 -2.39 -0.02 2.25 16 30 H 0.14 2.63 7.40 -2.39 -0.02 2.61 16 31 H 0.22 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.42 3.39 7.78 -92.70 -0.72 2.66 16 33 H 0.41 4.38 8.93 -92.71 -0.83 3.56 16 34 H 0.22 3.42 7.50 -2.91 -0.02 3.40 16 Total: -1.00 -90.61 306.22 2.09 -88.52 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -0.39 Total: 6.83 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 6.11 Total: 24.08 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -5.54 Total: -117.75 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.12 Total: -48.70 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -90.61 2.09 -88.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129431594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.149 kcal (2) G-P(sol) polarization free energy of solvation -90.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.48 seconds