Wall clock time and date at job start Mon Mar 30 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47074 * 2 1 4 4 C 1.46904 * 110.99888 * 199.49121 * 3 2 1 5 5 C 1.50697 * 109.47282 * 66.04637 * 4 3 2 6 6 H 1.08000 * 119.99747 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99755 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00542 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99817 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46846 * 60.00140 * 9 7 5 11 11 H 1.48499 * 109.47177 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47136 * 300.00099 * 9 7 5 13 13 C 1.38997 * 110.99868 * 75.53548 * 3 2 1 14 14 N 1.32500 * 119.65805 * 58.90071 * 13 3 2 15 15 C 1.32462 * 121.52824 * 179.97438 * 14 13 3 16 16 N 1.38987 * 119.66253 * 180.02562 * 15 14 13 17 17 C 1.39010 * 120.67710 * 359.97438 * 15 14 13 18 18 C 1.38506 * 119.25921 * 0.02562 * 17 15 14 19 19 C 1.38541 * 118.59315 * 0.27496 * 18 17 15 20 20 N 1.48010 * 120.37244 * 179.72052 * 19 18 17 21 21 O 1.21795 * 119.99639 * 354.58596 * 20 19 18 22 22 O 1.21798 * 120.00078 * 174.58164 * 20 19 18 23 23 H 1.08996 * 109.47118 * 304.88065 * 1 2 3 24 24 H 1.08998 * 109.47062 * 64.88081 * 1 2 3 25 25 H 1.08999 * 109.46913 * 184.88126 * 1 2 3 26 26 H 1.09000 * 109.46947 * 240.00244 * 2 1 3 27 27 H 1.08994 * 109.47474 * 120.00578 * 2 1 3 28 28 H 1.08998 * 109.46996 * 186.04924 * 4 3 2 29 29 H 1.08996 * 109.46875 * 306.04594 * 4 3 2 30 30 H 0.96997 * 120.00614 * 180.02562 * 8 7 5 31 31 H 0.97004 * 120.00055 * 179.97438 * 16 15 14 32 32 H 0.97003 * 119.99952 * 359.97292 * 16 15 14 33 33 H 1.08000 * 120.36483 * 180.02562 * 17 15 14 34 34 H 1.08002 * 120.70106 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4141 1.4504 -0.4576 5 6 3.4867 1.0444 -1.9071 6 1 2.5869 0.7662 -2.4356 7 6 4.7016 1.0294 -2.5586 8 7 5.7971 1.3697 -1.9155 9 14 4.7915 0.5269 -4.3556 10 1 3.9593 1.4489 -5.1696 11 1 6.2010 0.5941 -4.8185 12 1 4.2858 -0.8610 -4.5074 13 6 1.8801 1.9626 1.2565 14 7 2.4791 1.4112 2.3019 15 6 2.3715 1.9307 3.5156 16 7 3.0168 1.3204 4.5847 17 6 1.6207 3.0806 3.7308 18 6 0.9816 3.6823 2.6594 19 6 1.1095 3.1096 1.4044 20 7 0.4382 3.7162 0.2330 21 8 -0.3101 4.6652 0.3839 22 8 0.6341 3.2663 -0.8817 23 1 -0.3633 0.5877 0.8430 24 1 -0.3633 0.4362 -0.9305 25 1 -0.3633 -1.0239 0.0874 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.7855 2.4691 -0.3465 29 1 4.0247 0.7738 0.1402 30 1 6.6518 1.3594 -2.3740 31 1 2.9416 1.6969 5.4755 32 1 3.5423 0.5180 4.4400 33 1 1.5368 3.5002 4.7225 34 1 0.3926 4.5766 2.8001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131459975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:14 Heat of formation + Delta-G solvation = 54.766123 kcal Electronic energy + Delta-G solvation = -20773.626359 eV Core-core repulsion = 17517.642741 eV Total energy + Delta-G solvation = -3255.983618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52369 -40.24504 -37.24523 -35.61004 -34.62768 -32.75809 -32.20358 -30.43812 -29.53154 -26.75129 -25.17601 -23.66533 -22.54365 -22.18111 -20.64186 -18.71542 -18.26561 -17.45590 -17.01150 -16.77196 -16.29533 -15.42964 -15.25623 -14.79514 -14.32080 -13.76129 -13.69851 -13.58454 -13.06117 -12.45595 -12.18719 -11.46985 -11.14499 -11.03689 -10.83895 -10.75975 -10.61689 -10.39398 -10.36336 -10.26722 -10.15270 -9.80587 -9.71405 -9.25015 -8.46709 -8.27465 -7.70939 -6.03187 -4.04263 0.43808 1.05525 1.96364 2.13271 3.18417 3.37943 3.41366 3.45898 3.62147 4.06530 4.48529 4.50967 4.70135 4.86440 5.18027 5.33617 5.48667 5.65451 5.68705 5.84582 5.91276 6.06530 6.27344 6.60297 6.71211 6.88872 7.03399 7.05478 7.16191 7.25319 7.73210 7.82061 7.98229 8.04585 8.40806 8.50333 9.01827 9.59034 11.07926 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.006993 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.613299 B = 4003.167664 C = 4595.977357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.479 5.479 4 C 0.209 3.791 5 C -0.504 4.504 6 H 0.071 0.929 7 C 0.057 3.943 8 N -0.900 5.900 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.445 3.555 14 N -0.560 5.560 15 C 0.450 3.550 16 N -0.837 5.837 17 C -0.258 4.258 18 C 0.026 3.974 19 C -0.144 4.144 20 N 0.043 4.957 21 O -0.234 6.234 22 O -0.080 6.080 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.411 0.589 32 H 0.410 0.590 33 H 0.146 0.854 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 -0.014 13.978 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 N -0.204 5.204 4 C 0.087 3.913 5 C -0.543 4.543 6 H 0.089 0.911 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.202 1.202 13 C 0.212 3.788 14 N -0.284 5.284 15 C 0.209 3.791 16 N -0.378 5.378 17 C -0.283 4.283 18 C 0.000 4.000 19 C -0.235 4.235 20 N 0.562 4.438 21 O -0.428 6.428 22 O -0.316 6.316 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.241 0.759 32 H 0.240 0.760 33 H 0.164 0.836 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.764 -0.619 14.152 15.697 hybrid contribution 0.315 0.156 -0.076 0.359 sum -6.449 -0.463 14.076 15.490 Atomic orbital electron populations 1.21806 0.96326 1.00330 1.01821 1.22102 0.94230 0.87595 1.02768 1.60897 1.27135 1.19412 1.12916 1.19778 0.78036 0.97303 0.96200 1.21043 0.93665 1.44917 0.94660 0.91058 1.24966 0.95454 0.95445 0.98592 1.69954 0.98544 1.48519 1.36900 0.86480 0.76794 0.79131 0.84574 1.19845 1.21502 1.20198 1.19861 0.82464 0.86758 0.89676 1.67919 1.26606 1.35512 0.98328 1.18571 0.85981 0.87466 0.87113 1.42387 1.55411 1.32443 1.07588 1.21194 1.07100 0.99578 1.00467 1.21052 0.92581 0.97375 0.89029 1.21626 1.11381 1.02755 0.87770 1.43038 0.99046 0.99410 1.02306 1.94437 1.35509 1.20445 1.92439 1.94702 1.64964 1.63076 1.08811 0.94927 0.91335 0.92774 0.88047 0.94202 0.95583 0.97249 0.92835 0.75905 0.76004 0.83611 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.07 37.16 0.37 -2.07 16 2 C 0.06 1.17 5.49 -3.82 -0.02 1.15 16 3 N -0.48 -10.64 2.31 -174.59 -0.40 -11.05 16 4 C 0.21 5.50 4.53 -4.98 -0.02 5.47 16 5 C -0.50 -14.04 8.23 -34.44 -0.28 -14.32 16 6 H 0.07 1.95 7.31 -52.49 -0.38 1.57 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 C 0.45 8.87 4.54 -155.00 -0.70 8.17 16 14 N -0.56 -10.00 9.46 -11.62 -0.11 -10.11 16 15 C 0.45 6.08 7.74 -155.03 -1.20 4.88 16 16 N -0.84 -7.52 9.07 31.11 0.28 -7.23 16 17 C -0.26 -3.00 9.93 -39.20 -0.39 -3.39 16 18 C 0.03 0.37 9.65 -39.37 -0.38 -0.01 16 19 C -0.14 -2.67 6.89 -79.57 -0.55 -3.22 16 20 N 0.04 0.89 4.45 34.15 0.15 1.04 16 21 O -0.23 -4.65 18.53 -29.46 -0.55 -5.20 16 22 O -0.08 -1.84 17.14 -29.46 -0.50 -2.35 16 23 H 0.03 0.55 7.59 -51.93 -0.39 0.15 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.10 2.12 6.58 -51.93 -0.34 1.78 16 27 H 0.04 0.77 7.40 -51.93 -0.38 0.38 16 28 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 29 H 0.01 0.27 8.12 -51.93 -0.42 -0.15 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.41 2.16 8.82 -40.82 -0.36 1.80 16 32 H 0.41 3.61 8.95 -40.82 -0.37 3.25 16 33 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.16 1.82 7.70 -52.49 -0.40 1.42 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -32.77 300.83 -8.03 -40.80 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -3.88 Total: 0.66 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.27 Total: -1.84 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.66 Total: -53.27 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -1.05 Total: -7.55 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.77 -8.03 -40.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131459975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.567 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds