Wall clock time and date at job start Mon Mar 30 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47074 * 2 1 4 4 C 1.46904 * 110.99888 * 199.49121 * 3 2 1 5 5 C 1.50697 * 109.47282 * 66.04637 * 4 3 2 6 6 H 1.08000 * 119.99747 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99755 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00542 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99817 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46846 * 60.00140 * 9 7 5 11 11 H 1.48499 * 109.47177 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47136 * 300.00099 * 9 7 5 13 13 C 1.38997 * 110.99868 * 75.53548 * 3 2 1 14 14 N 1.32500 * 119.65805 * 58.90071 * 13 3 2 15 15 C 1.32462 * 121.52824 * 179.97438 * 14 13 3 16 16 N 1.38987 * 119.66253 * 180.02562 * 15 14 13 17 17 C 1.39010 * 120.67710 * 359.97438 * 15 14 13 18 18 C 1.38506 * 119.25921 * 0.02562 * 17 15 14 19 19 C 1.38541 * 118.59315 * 0.27496 * 18 17 15 20 20 N 1.48010 * 120.37244 * 179.72052 * 19 18 17 21 21 O 1.21795 * 119.99639 * 354.58596 * 20 19 18 22 22 O 1.21798 * 120.00078 * 174.58164 * 20 19 18 23 23 H 1.08996 * 109.47118 * 304.88065 * 1 2 3 24 24 H 1.08998 * 109.47062 * 64.88081 * 1 2 3 25 25 H 1.08999 * 109.46913 * 184.88126 * 1 2 3 26 26 H 1.09000 * 109.46947 * 240.00244 * 2 1 3 27 27 H 1.08994 * 109.47474 * 120.00578 * 2 1 3 28 28 H 1.08998 * 109.46996 * 186.04924 * 4 3 2 29 29 H 1.08996 * 109.46875 * 306.04594 * 4 3 2 30 30 H 0.96997 * 120.00614 * 180.02562 * 8 7 5 31 31 H 0.97004 * 120.00055 * 179.97438 * 16 15 14 32 32 H 0.97003 * 119.99952 * 359.97292 * 16 15 14 33 33 H 1.08000 * 120.36483 * 180.02562 * 17 15 14 34 34 H 1.08002 * 120.70106 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4141 1.4504 -0.4576 5 6 3.4867 1.0444 -1.9071 6 1 2.5869 0.7662 -2.4356 7 6 4.7016 1.0294 -2.5586 8 7 5.7971 1.3697 -1.9155 9 14 4.7915 0.5269 -4.3556 10 1 3.9593 1.4489 -5.1696 11 1 6.2010 0.5941 -4.8185 12 1 4.2858 -0.8610 -4.5074 13 6 1.8801 1.9626 1.2565 14 7 2.4791 1.4112 2.3019 15 6 2.3715 1.9307 3.5156 16 7 3.0168 1.3204 4.5847 17 6 1.6207 3.0806 3.7308 18 6 0.9816 3.6823 2.6594 19 6 1.1095 3.1096 1.4044 20 7 0.4382 3.7162 0.2330 21 8 -0.3101 4.6652 0.3839 22 8 0.6341 3.2663 -0.8817 23 1 -0.3633 0.5877 0.8430 24 1 -0.3633 0.4362 -0.9305 25 1 -0.3633 -1.0239 0.0874 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.7855 2.4691 -0.3465 29 1 4.0247 0.7738 0.1402 30 1 6.6518 1.3594 -2.3740 31 1 2.9416 1.6969 5.4755 32 1 3.5423 0.5180 4.4400 33 1 1.5368 3.5002 4.7225 34 1 0.3926 4.5766 2.8001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131459975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:13 Heat of formation + Delta-G solvation = 32.638693 kcal Electronic energy + Delta-G solvation = -20774.585877 eV Core-core repulsion = 17517.642741 eV Total energy + Delta-G solvation = -3256.943136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.98720 -41.58993 -38.73921 -37.15619 -35.79272 -34.77813 -33.51689 -31.88308 -31.01175 -28.63614 -26.59442 -25.05714 -24.42771 -23.48468 -22.19387 -20.12696 -19.65714 -18.83655 -18.32112 -18.25974 -18.13748 -16.99313 -16.57058 -16.24409 -16.01679 -15.10795 -15.00755 -14.72059 -14.44602 -14.31582 -14.10895 -12.95366 -12.90071 -12.77486 -12.47066 -12.37828 -12.27000 -11.99581 -11.92711 -11.92473 -11.85980 -11.53481 -11.00740 -10.98416 -10.62970 -9.44103 -9.32113 -8.21646 -6.30856 -0.95834 -0.10690 0.53332 0.72986 1.42992 1.48033 1.55237 2.17234 2.39258 2.43213 2.71744 3.12162 3.38357 3.55844 3.74617 3.91107 4.19665 4.37895 4.46732 4.59226 4.63157 4.78942 4.91289 4.99396 5.03730 5.14721 5.31156 5.54761 5.65901 5.94533 6.00823 6.02518 6.15196 6.49253 6.81245 6.90310 6.98655 7.37402 8.90009 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.006993 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.613299 B = 4003.167664 C = 4595.977357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.061 3.939 3 N -0.488 5.488 4 C 0.237 3.763 5 C -0.519 4.519 6 H 0.069 0.931 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.420 3.580 14 N -0.590 5.590 15 C 0.443 3.557 16 N -0.808 5.808 17 C -0.223 4.223 18 C 0.024 3.976 19 C -0.166 4.166 20 N 0.049 4.951 21 O -0.200 6.200 22 O -0.167 6.167 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.041 0.959 28 H -0.015 1.015 29 H -0.019 1.019 30 H 0.265 0.735 31 H 0.433 0.567 32 H 0.413 0.587 33 H 0.204 0.796 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 0.155 16.537 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.065 4.065 3 N -0.212 5.212 4 C 0.113 3.887 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.187 1.187 13 C 0.187 3.813 14 N -0.315 5.315 15 C 0.200 3.800 16 N -0.351 5.351 17 C -0.247 4.247 18 C -0.002 4.002 19 C -0.259 4.259 20 N 0.561 4.439 21 O -0.407 6.407 22 O -0.381 6.381 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.003 0.997 29 H -0.001 1.001 30 H 0.074 0.926 31 H 0.268 0.732 32 H 0.244 0.756 33 H 0.221 0.779 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.620 -0.558 16.657 18.325 hybrid contribution 0.587 0.174 -0.466 0.770 sum -7.033 -0.384 16.191 17.656 Atomic orbital electron populations 1.21669 0.93865 1.02082 1.01089 1.22086 0.96142 0.86549 1.01708 1.60643 1.24184 1.20606 1.15814 1.19178 0.80430 0.93754 0.95375 1.21334 0.93814 1.44880 0.95659 0.91286 1.25897 0.94945 0.95203 1.03334 1.70084 0.99114 1.49511 1.38835 0.85389 0.77002 0.79305 0.78666 1.19611 1.20781 1.18677 1.19691 0.84414 0.87859 0.89364 1.67753 1.27442 1.36649 0.99664 1.19003 0.86266 0.88220 0.86559 1.42409 1.53335 1.31808 1.07521 1.21765 1.03482 0.97415 1.02078 1.21500 0.93039 0.98225 0.87389 1.21836 1.12656 1.03159 0.88241 1.43362 0.98680 0.99089 1.02767 1.94361 1.34231 1.19684 1.92409 1.94722 1.67903 1.65161 1.10358 0.95003 0.92570 0.89663 0.90083 0.94089 0.99699 1.00081 0.92649 0.73220 0.75629 0.77922 0.79427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 10.07 71.98 0.72 -3.70 16 2 C 0.06 2.54 5.49 86.30 0.47 3.01 16 3 N -0.49 -22.98 2.31 -706.29 -1.63 -24.62 16 4 C 0.24 13.32 4.53 85.56 0.39 13.71 16 5 C -0.52 -30.45 8.23 25.60 0.21 -30.24 16 6 H 0.07 3.98 7.31 -2.91 -0.02 3.96 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.94 -57.45 13.29 21.44 0.28 -57.17 16 9 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 C 0.42 17.14 4.54 132.99 0.60 17.75 16 14 N -0.59 -20.92 9.46 -190.69 -1.80 -22.73 16 15 C 0.44 10.63 7.74 133.02 1.03 11.66 16 16 N -0.81 -11.42 9.07 -55.49 -0.50 -11.92 16 17 C -0.22 -4.10 9.93 22.52 0.22 -3.88 16 18 C 0.02 0.61 9.65 22.41 0.22 0.82 16 19 C -0.17 -6.13 6.89 36.62 0.25 -5.88 16 20 N 0.05 2.09 4.45 -45.88 -0.20 1.88 16 21 O -0.20 -7.80 18.53 18.89 0.35 -7.45 16 22 O -0.17 -8.19 17.14 18.89 0.32 -7.86 16 23 H 0.03 1.07 7.59 -2.39 -0.02 1.05 16 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.08 3.60 6.58 -2.39 -0.02 3.58 16 27 H 0.04 1.64 7.40 -2.39 -0.02 1.62 16 28 H -0.02 -0.95 8.06 -2.39 -0.02 -0.97 16 29 H -0.02 -1.11 8.12 -2.39 -0.02 -1.13 16 30 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.43 2.30 8.82 -92.71 -0.82 1.48 16 32 H 0.41 6.08 8.95 -92.71 -0.83 5.25 16 33 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 34 H 0.19 3.48 7.70 -2.91 -0.02 3.46 16 Total: -1.00 -77.52 300.83 2.93 -74.59 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -0.49 Total: 3.74 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 4.58 Total: 3.96 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -3.86 Total: -114.55 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.67 Total: -15.32 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.52 2.93 -74.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131459975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.230 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds