Wall clock time and date at job start Mon Mar 30 2020 05:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47230 * 2 1 4 4 C 1.50706 * 109.47135 * 119.99858 * 2 1 3 5 5 H 1.08001 * 119.99604 * 120.00369 * 4 2 1 6 6 C 1.37876 * 119.99979 * 300.00164 * 4 2 1 7 7 N 1.31508 * 119.99850 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00035 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.46783 * 89.99790 * 8 6 4 10 10 H 1.48497 * 109.47053 * 209.99851 * 8 6 4 11 11 H 1.48503 * 109.46948 * 329.99927 * 8 6 4 12 12 N 1.46903 * 109.47539 * 240.00032 * 2 1 3 13 13 C 1.46901 * 111.00071 * 178.39944 * 12 2 1 14 14 C 1.38994 * 110.99931 * 54.44435 * 12 2 1 15 15 N 1.32501 * 119.65400 * 57.88773 * 14 12 2 16 16 C 1.32471 * 121.51908 * 179.71178 * 15 14 12 17 17 N 1.38997 * 119.65560 * 180.28668 * 16 15 14 18 18 C 1.39003 * 120.68578 * 0.56418 * 16 15 14 19 19 C 1.38510 * 119.25551 * 359.72798 * 18 16 15 20 20 C 1.38546 * 118.59248 * 359.97438 * 19 18 16 21 21 N 1.48009 * 120.37385 * 179.97438 * 20 19 18 22 22 O 1.21796 * 119.99436 * 5.16749 * 21 20 19 23 23 O 1.21796 * 120.00182 * 185.16625 * 21 20 19 24 24 H 1.09001 * 109.47246 * 54.87036 * 1 2 3 25 25 H 1.09001 * 109.47222 * 174.87248 * 1 2 3 26 26 H 1.09000 * 109.47733 * 294.87072 * 1 2 3 27 27 H 0.97001 * 120.00071 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47193 * 60.31472 * 13 12 2 29 29 H 1.08999 * 109.47087 * 300.31584 * 13 12 2 30 30 H 1.09002 * 109.46619 * 180.31092 * 13 12 2 31 31 H 0.97001 * 119.99604 * 180.27564 * 17 16 15 32 32 H 0.96994 * 120.00359 * 0.27479 * 17 16 15 33 33 H 1.08001 * 120.37188 * 179.74581 * 18 16 15 34 34 H 1.08006 * 120.70624 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8596 3.5565 8 14 0.6257 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9954 3.9071 11 1 0.8491 2.1774 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 3.4877 -0.6789 -1.2526 14 6 1.4744 -0.1388 -2.3518 15 7 1.6544 1.1484 -2.6093 16 6 1.1561 1.7130 -3.6991 17 7 1.3737 3.0656 -3.9339 18 6 0.4131 0.9681 -4.6075 19 6 0.2012 -0.3791 -4.3653 20 6 0.7415 -0.9397 -3.2193 21 7 0.5390 -2.3753 -2.9214 22 8 -0.0239 -3.0915 -3.7299 23 8 0.9354 -2.8404 -1.8678 24 1 -0.3634 0.5913 -0.8405 25 1 -0.3634 -1.0235 -0.0918 26 1 -0.3634 0.4322 0.9323 27 1 1.9031 -0.5280 4.4375 28 1 3.8877 -1.1855 -0.3743 29 1 3.8411 0.3520 -1.2698 30 1 3.8233 -1.1933 -2.1531 31 1 1.0077 3.4850 -4.7283 32 1 1.8915 3.5902 -3.3033 33 1 0.0057 1.4345 -5.4924 34 1 -0.3729 -0.9799 -5.0552 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133236324.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:43 Heat of formation + Delta-G solvation = 70.640640 kcal Electronic energy + Delta-G solvation = -21067.908611 eV Core-core repulsion = 17812.613363 eV Total energy + Delta-G solvation = -3255.295248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63768 -40.37572 -37.47887 -35.70774 -34.78915 -33.00155 -32.07357 -30.43345 -29.73632 -26.22939 -25.11882 -24.59742 -23.14493 -22.24002 -20.22216 -18.81356 -18.36565 -17.52084 -17.08862 -16.84300 -16.64742 -15.54987 -15.43974 -14.93065 -14.33225 -13.87605 -13.74649 -13.47873 -13.20261 -12.57678 -12.28730 -11.88821 -11.27008 -11.08527 -10.87441 -10.75294 -10.72821 -10.48159 -10.36332 -10.23331 -9.94968 -9.93558 -9.54321 -9.19960 -8.58919 -8.38381 -7.86342 -6.07646 -4.06372 0.32698 0.94037 1.85893 2.02817 3.08167 3.24144 3.33823 3.35692 3.50343 3.94688 4.37216 4.39800 4.59384 4.75603 5.07155 5.23784 5.38987 5.56008 5.75178 5.95509 6.12285 6.17051 6.32233 6.41931 6.64887 6.73544 6.79800 6.94419 7.01921 7.08313 7.46057 7.63351 7.84080 7.87638 8.40229 8.57304 9.01278 9.52162 11.04806 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.008211 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.071752 B = 3409.220634 C = 4200.813297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.195 3.805 3 H 0.019 0.981 4 C -0.502 4.502 5 H 0.091 0.909 6 C 0.075 3.925 7 N -0.893 5.893 8 Si 0.879 3.121 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.269 1.269 12 N -0.471 5.471 13 C 0.046 3.954 14 C 0.443 3.557 15 N -0.562 5.562 16 C 0.450 3.550 17 N -0.836 5.836 18 C -0.256 4.256 19 C 0.027 3.973 20 C -0.143 4.143 21 N 0.042 4.958 22 O -0.229 6.229 23 O -0.081 6.081 24 H 0.015 0.985 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.265 0.735 28 H 0.100 0.900 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.411 0.589 32 H 0.410 0.590 33 H 0.147 0.853 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 7.850 -17.163 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.090 3.910 3 H 0.036 0.964 4 C -0.541 4.541 5 H 0.109 0.891 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.710 3.290 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.194 1.194 12 N -0.195 5.195 13 C -0.100 4.100 14 C 0.211 3.789 15 N -0.285 5.285 16 C 0.208 3.792 17 N -0.378 5.378 18 C -0.282 4.282 19 C 0.000 4.000 20 C -0.235 4.235 21 N 0.561 4.439 22 O -0.425 6.425 23 O -0.316 6.316 24 H 0.034 0.966 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.242 0.758 32 H 0.240 0.760 33 H 0.165 0.835 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.888 8.503 -16.644 18.786 hybrid contribution -1.009 1.316 -0.430 1.713 sum -2.897 9.819 -17.074 19.908 Atomic orbital electron populations 1.22264 0.98747 1.01247 0.98572 1.19815 0.91178 0.93219 0.86787 0.96380 1.20861 1.32217 1.13776 0.87207 0.89143 1.24838 0.95728 0.96424 0.95756 1.69855 1.45438 1.39972 0.97843 0.86992 0.80953 0.84070 0.77013 1.20542 1.22253 1.19438 1.60747 1.09024 1.50872 0.98842 1.22247 0.84502 1.00398 1.02825 1.19849 0.85050 0.84503 0.89527 1.67961 1.27883 1.12530 1.20143 1.18585 0.86489 0.86032 0.88082 1.42402 1.60068 1.06221 1.29112 1.21213 1.09219 0.93908 1.03826 1.21072 0.91713 0.94402 0.92770 1.21623 1.15468 0.83947 1.02441 1.43057 0.98510 1.02054 1.00296 1.94447 1.45188 1.57630 1.45199 1.94716 1.48914 1.76661 1.11295 0.96606 0.91673 0.93005 0.92509 0.88190 0.94876 0.93493 0.75829 0.75993 0.83513 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.34 37.15 0.31 -3.21 16 2 C 0.20 4.70 1.43 -68.86 -0.10 4.60 16 3 H 0.02 0.47 7.01 -51.93 -0.36 0.10 16 4 C -0.50 -13.92 8.52 -34.44 -0.29 -14.21 16 5 H 0.09 2.70 7.03 -52.49 -0.37 2.33 16 6 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.88 21.85 24.41 -169.99 -4.15 17.70 16 9 H -0.28 -6.81 6.83 56.52 0.39 -6.43 16 10 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 11 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.47 -10.12 2.51 -174.79 -0.44 -10.55 16 13 C 0.05 0.90 9.16 60.07 0.55 1.45 16 14 C 0.44 8.38 3.75 -155.01 -0.58 7.79 16 15 N -0.56 -9.50 9.72 -11.62 -0.11 -9.61 16 16 C 0.45 5.66 7.74 -155.01 -1.20 4.46 16 17 N -0.84 -6.87 9.07 31.11 0.28 -6.59 16 18 C -0.26 -2.74 9.93 -39.20 -0.39 -3.13 16 19 C 0.03 0.35 9.66 -39.37 -0.38 -0.03 16 20 C -0.14 -2.52 6.89 -79.57 -0.55 -3.06 16 21 N 0.04 0.82 4.45 34.15 0.15 0.98 16 22 O -0.23 -4.37 18.53 -29.46 -0.55 -4.92 16 23 O -0.08 -1.81 17.14 -29.46 -0.50 -2.31 16 24 H 0.01 0.33 7.29 -51.93 -0.38 -0.05 16 25 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.05 1.24 3.22 -51.93 -0.17 1.08 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.10 2.06 6.57 -51.93 -0.34 1.72 16 29 H 0.03 0.62 8.06 -51.93 -0.42 0.20 16 30 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.41 1.87 8.82 -40.82 -0.36 1.51 16 32 H 0.41 3.32 8.95 -40.82 -0.37 2.95 16 33 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.16 1.69 7.70 -52.48 -0.40 1.28 16 LS Contribution 288.41 15.07 4.35 4.35 Total: -1.00 -32.96 288.41 -6.54 -39.50 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -3.62 Total: 0.92 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.73 Total: -3.31 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.66 Total: -51.93 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -1.05 Total: -7.23 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.96 -6.54 -39.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133236324.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.145 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds