Wall clock time and date at job start Mon Mar 30 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35894 * 116.99737 * 2 1 4 4 C 1.38824 * 120.01992 * 359.97438 * 3 2 1 5 5 C 1.38174 * 120.09077 * 179.97438 * 4 3 2 6 6 C 1.38164 * 120.13065 * 359.79580 * 5 4 3 7 7 C 1.38927 * 120.03441 * 0.45842 * 6 5 4 8 8 N 1.39667 * 120.04834 * 179.79319 * 7 6 5 9 9 C 1.46893 * 111.00033 * 295.76975 * 8 7 6 10 10 C 1.46901 * 110.99682 * 59.72472 * 8 7 6 11 11 C 1.50701 * 109.46921 * 170.00023 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.38575 * 120.02088 * 180.02562 * 3 2 1 20 20 N 1.48023 * 120.05944 * 359.95667 * 19 3 2 21 21 O 1.21805 * 119.99983 * 270.02587 * 20 19 3 22 22 O 1.21802 * 120.00264 * 90.02099 * 20 19 3 23 23 H 1.09005 * 109.47498 * 299.99707 * 1 2 3 24 24 H 1.08998 * 109.47611 * 59.99527 * 1 2 3 25 25 H 1.09006 * 109.47335 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.95017 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.93529 * 180.02562 * 5 4 3 28 28 H 1.07999 * 119.97989 * 180.23414 * 6 5 4 29 29 H 1.08999 * 109.47439 * 183.95324 * 9 8 7 30 30 H 1.08997 * 109.47257 * 303.95451 * 9 8 7 31 31 H 1.09006 * 109.46808 * 63.95007 * 9 8 7 32 32 H 1.09002 * 109.47401 * 50.00051 * 10 8 7 33 33 H 1.09001 * 109.46874 * 290.00063 * 10 8 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2901 2.3754 -0.0005 5 6 1.9158 3.6073 0.0000 6 6 3.2953 3.6845 0.0053 7 6 4.0568 2.5226 0.0005 8 7 5.4513 2.6003 0.0016 9 6 5.9444 3.2304 -1.2304 10 6 5.9378 3.3147 1.1894 11 6 7.4346 3.1680 1.2858 12 1 7.9708 2.6011 0.5392 13 6 8.1195 3.7583 2.3267 14 7 7.4665 4.4490 3.2356 15 14 9.9748 3.5770 2.4459 16 1 10.4663 2.7588 1.3082 17 1 10.6074 4.9198 2.3990 18 1 10.3258 2.9088 3.7247 19 6 3.4297 1.2839 -0.0005 20 7 4.2377 0.0437 -0.0001 21 8 4.5701 -0.4663 1.0549 22 8 4.5701 -0.4670 -1.0548 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 0.2117 2.3182 -0.0005 27 1 1.3255 4.5116 0.0000 28 1 3.7818 4.6487 0.0096 29 1 7.0342 3.2150 -1.2354 30 1 5.5693 2.6817 -2.0943 31 1 5.5953 4.2620 -1.2757 32 1 5.4733 2.8948 2.0816 33 1 5.6807 4.3709 1.1088 34 1 7.9484 4.8640 3.9681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134891614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:37 Heat of formation + Delta-G solvation = 0.123313 kcal Electronic energy + Delta-G solvation = -20519.600862 eV Core-core repulsion = 17228.955003 eV Total energy + Delta-G solvation = -3290.645859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64379 -40.20563 -38.63761 -35.85783 -35.77466 -32.71604 -31.72103 -29.61345 -27.79594 -27.41908 -26.12996 -24.95392 -22.86836 -22.07795 -20.67258 -18.94492 -18.12126 -17.78958 -17.29117 -16.45625 -16.10709 -15.87393 -15.28288 -15.08863 -14.70350 -14.31017 -13.86705 -13.18653 -12.82108 -12.76097 -12.23785 -12.08231 -11.82885 -11.53638 -11.29695 -11.09390 -10.98195 -10.78928 -10.69699 -10.48690 -10.42013 -10.12263 -9.44371 -9.19853 -8.56567 -8.51799 -7.87413 -6.13635 -4.16093 0.81329 1.06191 1.25672 1.97671 2.76184 3.28380 3.32262 3.36333 3.42106 4.23226 4.43633 4.50558 4.71229 4.82192 4.83872 5.00149 5.07851 5.17319 5.22488 5.27255 5.72592 5.82914 5.89955 6.07096 6.18911 6.25361 6.49607 6.74542 6.94388 6.98050 7.09275 7.59936 7.70257 7.93462 8.27965 8.28580 8.89502 9.48766 10.97376 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.005793 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.565827 B = 4832.204306 C = 5264.299800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.174 3.826 4 C -0.217 4.217 5 C -0.038 4.038 6 C -0.177 4.177 7 C 0.202 3.798 8 N -0.526 5.526 9 C 0.043 3.957 10 C 0.200 3.800 11 C -0.512 4.512 12 H 0.067 0.933 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.903 3.097 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.049 4.049 20 N 0.049 4.951 21 O -0.134 6.134 22 O -0.153 6.153 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.035 0.965 33 H 0.004 0.996 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.473 -1.677 -7.486 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.126 3.874 4 C -0.236 4.236 5 C -0.057 4.057 6 C -0.198 4.198 7 C 0.105 3.895 8 N -0.248 5.248 9 C -0.103 4.103 10 C 0.078 3.922 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.208 1.208 19 C -0.132 4.132 20 N 0.581 4.419 21 O -0.360 6.360 22 O -0.375 6.375 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.162 0.838 27 H 0.157 0.843 28 H 0.162 0.838 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.564 -1.589 -7.324 17.275 hybrid contribution 0.581 0.644 0.287 0.913 sum -14.984 -0.945 -7.038 16.581 Atomic orbital electron populations 1.23175 0.76989 1.04666 1.01811 1.86142 1.22715 1.25776 1.88047 1.18274 0.88678 0.85962 0.94490 1.21095 1.00237 0.91024 1.11271 1.21097 0.94357 0.97325 0.92881 1.21780 0.94117 0.99009 1.04847 1.18578 0.92367 0.88842 0.89669 1.60010 1.01293 1.56961 1.06576 1.22300 1.02774 0.95734 0.89452 1.19930 0.96632 0.90994 0.84629 1.21082 0.90729 1.32700 1.10564 0.91445 1.24967 0.99138 0.94927 0.95259 1.69958 1.35964 1.34146 1.13452 0.86351 0.84519 0.77736 0.78344 1.19456 1.21026 1.20756 1.20212 0.87752 0.85285 1.19955 1.42860 0.98439 1.00564 1.00069 1.94539 1.56776 1.63826 1.20889 1.94465 1.57608 1.64216 1.21182 0.91966 0.92053 0.87612 0.83791 0.84314 0.83772 0.89216 0.92870 0.95484 0.94706 0.97821 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.56 10.25 -19.41 -0.20 -4.75 16 3 C 0.17 2.72 6.68 -39.24 -0.26 2.45 16 4 C -0.22 -2.58 9.04 -39.39 -0.36 -2.94 16 5 C -0.04 -0.46 10.03 -39.63 -0.40 -0.85 16 6 C -0.18 -2.79 8.70 -39.35 -0.34 -3.13 16 7 C 0.20 3.94 4.66 -83.81 -0.39 3.55 16 8 N -0.53 -11.76 4.44 -180.35 -0.80 -12.56 16 9 C 0.04 0.84 9.09 60.06 0.55 1.38 16 10 C 0.20 5.19 4.30 -4.97 -0.02 5.17 16 11 C -0.51 -14.38 8.52 -34.44 -0.29 -14.67 16 12 H 0.07 1.90 7.10 -52.49 -0.37 1.52 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 15 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 C -0.05 -0.96 6.19 -79.60 -0.49 -1.45 16 20 N 0.05 1.07 3.80 34.13 0.13 1.20 16 21 O -0.13 -3.13 19.26 -29.46 -0.57 -3.70 16 22 O -0.15 -3.35 19.26 -29.46 -0.57 -3.92 16 23 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 24 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.14 1.15 6.29 -52.49 -0.33 0.82 16 27 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.14 2.21 7.15 -52.49 -0.38 1.83 16 29 H 0.09 1.81 6.86 -51.93 -0.36 1.46 16 30 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 31 H 0.03 0.47 7.49 -51.93 -0.39 0.08 16 32 H 0.03 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.00 0.11 7.46 -51.93 -0.39 -0.28 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -33.26 301.97 -6.68 -39.94 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -3.83 Total: -4.20 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.12 Total: -7.70 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.07 Total: -36.89 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -1.33 Total: -12.37 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.26 -6.68 -39.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134891614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.060 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds