Wall clock time and date at job start Mon Mar 30 2020 04:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35894 * 116.99737 * 2 1 4 4 C 1.38824 * 120.01992 * 359.97438 * 3 2 1 5 5 C 1.38174 * 120.09077 * 179.97438 * 4 3 2 6 6 C 1.38164 * 120.13065 * 359.79580 * 5 4 3 7 7 C 1.38927 * 120.03441 * 0.45842 * 6 5 4 8 8 N 1.39667 * 120.04834 * 179.79319 * 7 6 5 9 9 C 1.46893 * 111.00033 * 295.76975 * 8 7 6 10 10 C 1.46901 * 110.99682 * 59.72472 * 8 7 6 11 11 C 1.50701 * 109.46921 * 170.00023 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.38575 * 120.02088 * 180.02562 * 3 2 1 20 20 N 1.48023 * 120.05944 * 359.95667 * 19 3 2 21 21 O 1.21805 * 119.99983 * 270.02587 * 20 19 3 22 22 O 1.21802 * 120.00264 * 90.02099 * 20 19 3 23 23 H 1.09005 * 109.47498 * 299.99707 * 1 2 3 24 24 H 1.08998 * 109.47611 * 59.99527 * 1 2 3 25 25 H 1.09006 * 109.47335 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.95017 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.93529 * 180.02562 * 5 4 3 28 28 H 1.07999 * 119.97989 * 180.23414 * 6 5 4 29 29 H 1.08999 * 109.47439 * 183.95324 * 9 8 7 30 30 H 1.08997 * 109.47257 * 303.95451 * 9 8 7 31 31 H 1.09006 * 109.46808 * 63.95007 * 9 8 7 32 32 H 1.09002 * 109.47401 * 50.00051 * 10 8 7 33 33 H 1.09001 * 109.46874 * 290.00063 * 10 8 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2901 2.3754 -0.0005 5 6 1.9158 3.6073 0.0000 6 6 3.2953 3.6845 0.0053 7 6 4.0568 2.5226 0.0005 8 7 5.4513 2.6003 0.0016 9 6 5.9444 3.2304 -1.2304 10 6 5.9378 3.3147 1.1894 11 6 7.4346 3.1680 1.2858 12 1 7.9708 2.6011 0.5392 13 6 8.1195 3.7583 2.3267 14 7 7.4665 4.4490 3.2356 15 14 9.9748 3.5770 2.4459 16 1 10.4663 2.7588 1.3082 17 1 10.6074 4.9198 2.3990 18 1 10.3258 2.9088 3.7247 19 6 3.4297 1.2839 -0.0005 20 7 4.2377 0.0437 -0.0001 21 8 4.5701 -0.4663 1.0549 22 8 4.5701 -0.4670 -1.0548 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 0.2117 2.3182 -0.0005 27 1 1.3255 4.5116 0.0000 28 1 3.7818 4.6487 0.0096 29 1 7.0342 3.2150 -1.2354 30 1 5.5693 2.6817 -2.0943 31 1 5.5953 4.2620 -1.2757 32 1 5.4733 2.8948 2.0816 33 1 5.6807 4.3709 1.1088 34 1 7.9484 4.8640 3.9681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134891614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:36 Heat of formation + Delta-G solvation = -22.381029 kcal Electronic energy + Delta-G solvation = -20520.576723 eV Core-core repulsion = 17228.955003 eV Total energy + Delta-G solvation = -3291.621721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.19850 -41.45664 -39.92584 -37.48250 -37.26140 -34.78430 -33.00063 -30.93050 -29.35055 -28.57682 -27.64499 -26.58077 -24.49551 -23.48223 -22.12360 -20.37519 -19.81081 -18.99649 -18.84716 -18.34719 -17.22940 -17.06209 -16.82737 -16.54909 -16.15511 -15.69664 -15.45614 -14.60058 -14.21944 -13.86915 -13.79991 -13.42008 -13.13018 -12.95433 -12.74206 -12.71476 -12.65106 -12.52735 -12.28199 -12.19105 -12.10756 -12.02648 -11.49797 -10.71270 -10.45340 -9.66598 -9.58017 -8.30042 -6.40673 -0.46362 -0.40302 -0.10098 0.50341 1.37165 1.39783 1.52671 1.77928 2.18234 2.35407 2.90031 3.04151 3.56137 3.59623 3.83456 3.89658 4.03159 4.24792 4.32035 4.34982 4.44447 4.64492 4.69513 4.82429 4.84173 5.00986 5.02840 5.09460 5.21531 5.25433 5.54832 5.88901 5.90412 5.94556 6.38744 6.53961 6.70652 7.28926 8.81472 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.005793 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.565827 B = 4832.204306 C = 5264.299800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.342 6.342 3 C 0.172 3.828 4 C -0.192 4.192 5 C -0.013 4.013 6 C -0.184 4.184 7 C 0.163 3.837 8 N -0.545 5.545 9 C 0.048 3.952 10 C 0.224 3.776 11 C -0.532 4.532 12 H 0.059 0.941 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.270 1.270 18 H -0.279 1.279 19 C -0.086 4.086 20 N 0.051 4.949 21 O -0.192 6.192 22 O -0.145 6.145 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.197 0.803 27 H 0.192 0.808 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.043 0.957 32 H -0.006 1.006 33 H -0.005 1.005 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.927 -0.492 -8.433 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.255 6.255 3 C 0.124 3.876 4 C -0.210 4.210 5 C -0.031 4.031 6 C -0.205 4.205 7 C 0.068 3.932 8 N -0.268 5.268 9 C -0.098 4.098 10 C 0.100 3.900 11 C -0.571 4.571 12 H 0.077 0.923 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.795 3.205 16 H -0.192 1.192 17 H -0.195 1.195 18 H -0.204 1.204 19 C -0.168 4.168 20 N 0.579 4.421 21 O -0.406 6.406 22 O -0.374 6.374 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.140 0.860 26 H 0.214 0.786 27 H 0.209 0.791 28 H 0.162 0.838 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.012 0.988 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.040 -0.424 -8.196 19.819 hybrid contribution 1.111 0.254 0.472 1.234 sum -16.929 -0.169 -7.724 18.608 Atomic orbital electron populations 1.23653 0.73677 1.06678 1.03959 1.86134 1.26121 1.25622 1.87666 1.18541 0.87405 0.87836 0.93843 1.21714 1.02380 0.89188 1.07728 1.21662 0.92744 0.99474 0.89259 1.21875 0.95949 0.97395 1.05285 1.18678 0.91077 0.90209 0.93273 1.59692 1.04122 1.56926 1.06089 1.22270 1.01683 0.96862 0.88963 1.19419 0.95313 0.90258 0.84991 1.21365 0.92153 1.32797 1.10739 0.92278 1.25841 1.03974 0.94369 0.94710 1.70056 1.37890 1.34796 1.13990 0.85313 0.78713 0.78262 0.78226 1.19171 1.19498 1.20449 1.20547 0.89171 0.83395 1.23698 1.43325 0.98062 1.01334 0.99404 1.94520 1.59099 1.65663 1.21356 1.94400 1.57052 1.64789 1.21162 0.90017 0.89437 0.86036 0.78594 0.79086 0.83788 0.90973 0.91125 0.93877 0.98795 0.98779 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -9.29 10.25 -92.36 -0.95 -10.23 16 3 C 0.17 5.05 6.68 22.49 0.15 5.20 16 4 C -0.19 -3.63 9.04 22.39 0.20 -3.43 16 5 C -0.01 -0.26 10.03 22.24 0.22 -0.04 16 6 C -0.18 -5.54 8.70 22.42 0.20 -5.35 16 7 C 0.16 6.48 4.66 38.20 0.18 6.65 16 8 N -0.55 -25.42 4.44 -724.51 -3.22 -28.64 16 9 C 0.05 1.89 9.09 127.69 1.16 3.05 16 10 C 0.22 12.18 4.30 85.56 0.37 12.55 16 11 C -0.53 -31.05 8.52 25.60 0.22 -30.83 16 12 H 0.06 3.46 7.10 -2.91 -0.02 3.44 16 13 C 0.01 0.59 5.46 84.66 0.46 1.05 16 14 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 15 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 C -0.09 -3.37 6.19 36.60 0.23 -3.15 16 20 N 0.05 2.34 3.80 -45.93 -0.17 2.16 16 21 O -0.19 -9.60 19.26 18.88 0.36 -9.23 16 22 O -0.15 -6.55 19.26 18.88 0.36 -6.19 16 23 H 0.08 0.73 7.66 -2.38 -0.02 0.71 16 24 H 0.09 0.67 7.66 -2.39 -0.02 0.65 16 25 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.20 1.68 6.29 -2.91 -0.02 1.66 16 27 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 28 H 0.14 4.26 7.15 -2.91 -0.02 4.24 16 29 H 0.07 3.03 6.86 -2.39 -0.02 3.01 16 30 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 31 H 0.04 1.52 7.49 -2.38 -0.02 1.50 16 32 H -0.01 -0.37 8.06 -2.39 -0.02 -0.39 16 33 H -0.01 -0.30 7.46 -2.39 -0.02 -0.32 16 34 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -78.25 301.97 4.32 -73.93 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: 1.12 Total: -0.70 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 4.50 Total: -13.02 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -3.11 Total: -81.75 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.22 Total: -25.66 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -78.25 4.32 -73.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134891614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.548 kcal (2) G-P(sol) polarization free energy of solvation -78.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds