Wall clock time and date at job start Mon Mar 30 2020 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 6 6 C 1.34785 * 119.99572 * 85.00499 * 5 3 2 7 7 O 1.21438 * 120.00088 * 359.97438 * 6 5 3 8 8 C 1.48830 * 119.99756 * 179.97438 * 6 5 3 9 9 O 1.21504 * 119.99999 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99995 * 179.97438 * 8 6 5 11 11 C 1.36120 * 120.00197 * 179.97438 * 10 8 6 12 12 H 1.07999 * 119.99653 * 0.02562 * 11 10 8 13 13 C 1.39575 * 120.00077 * 179.97438 * 11 10 8 14 14 N 1.31020 * 120.00425 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00248 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46764 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47181 * 119.99978 * 15 13 11 18 18 H 1.48500 * 109.47413 * 240.00220 * 15 13 11 19 19 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 20 20 N 1.30501 * 125.64964 * 304.68637 * 19 3 2 21 21 C 1.34123 * 109.25749 * 179.89572 * 20 19 3 22 22 C 1.34673 * 108.02170 * 0.37190 * 21 20 19 23 23 N 1.35042 * 125.65398 * 124.99690 * 19 3 2 24 24 H 0.97005 * 126.39312 * 359.94108 * 23 19 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96999 * 120.00274 * 264.99733 * 5 3 2 31 31 H 0.96999 * 119.99915 * 359.97438 * 10 8 6 32 32 H 0.96996 * 120.00101 * 179.97438 * 14 13 11 33 33 H 1.08000 * 125.99225 * 180.11578 * 21 20 19 34 34 H 1.07993 * 126.59454 * 179.81585 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6644 -1.3670 7 8 -0.3406 2.6319 -0.4333 8 6 0.0416 3.3301 -2.6386 9 8 0.8180 3.3630 -3.5727 10 7 -1.1759 3.8966 -2.7540 11 6 -1.5356 4.5060 -3.9168 12 1 -0.8455 4.5352 -4.7471 13 6 -2.7966 5.0922 -4.0364 14 7 -3.6340 5.0564 -3.0294 15 14 -3.2901 5.9291 -5.6320 16 1 -2.1739 5.8335 -6.6068 17 1 -4.4929 5.2606 -6.1902 18 1 -3.5959 7.3580 -5.3675 19 6 3.5419 1.4443 0.1238 20 7 4.2275 0.8673 1.0725 21 6 5.5358 1.0732 0.8607 22 6 5.6656 1.8126 -0.2574 23 7 4.4010 2.0482 -0.7252 24 1 4.1658 2.5543 -1.5187 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.2720 2.1231 -1.9978 31 1 -1.7958 3.8701 -2.0084 32 1 -4.5102 5.4640 -3.1125 33 1 6.3435 0.7130 1.4806 34 1 6.5897 2.1534 -0.7002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139659351.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:43 Heat of formation + Delta-G solvation = -39.010311 kcal Electronic energy + Delta-G solvation = -19926.141133 eV Core-core repulsion = 16666.091063 eV Total energy + Delta-G solvation = -3260.050070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.16096 -41.43040 -39.36240 -37.13108 -36.22669 -33.91696 -33.49509 -32.96140 -30.93112 -28.15912 -27.16079 -24.74963 -22.91899 -22.48609 -21.44488 -21.14542 -20.43348 -19.64925 -18.26462 -17.81748 -17.10132 -16.79844 -16.16926 -16.01017 -15.73420 -15.25524 -15.16286 -14.87538 -14.67631 -14.42007 -14.03680 -13.68442 -13.65706 -12.98311 -12.72557 -12.57794 -12.49161 -12.26951 -12.08557 -11.86122 -11.68449 -11.11987 -11.08149 -10.42957 -10.28357 -10.27039 -9.37557 -8.67285 -6.11856 0.56003 1.03063 1.40091 1.45496 1.52845 1.63517 2.07777 2.10593 2.27156 2.34771 3.13478 3.15446 3.32921 3.88613 3.96039 4.05581 4.12203 4.40047 4.50717 4.53619 4.67354 4.84269 4.96126 5.03494 5.11284 5.24818 5.28157 5.42796 5.66061 5.77880 6.03386 6.28531 6.34889 6.75293 6.94792 7.04699 7.26193 7.77768 8.48397 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034096 B = 0.004305 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.001575 B = 6503.205145 C = 7074.291734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.238 3.762 4 H 0.101 0.899 5 N -0.697 5.697 6 C 0.529 3.471 7 O -0.543 6.543 8 C 0.389 3.611 9 O -0.617 6.617 10 N -0.507 5.507 11 C -0.344 4.344 12 H 0.100 0.900 13 C -0.003 4.003 14 N -0.893 5.893 15 Si 1.008 2.992 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.267 1.267 19 C 0.184 3.816 20 N -0.503 5.503 21 C -0.051 4.051 22 C -0.035 4.035 23 N -0.560 5.560 24 H 0.428 0.572 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.411 0.589 31 H 0.401 0.599 32 H 0.289 0.711 33 H 0.195 0.805 34 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.436 -6.008 3.991 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C 0.132 3.868 4 H 0.118 0.882 5 N -0.352 5.352 6 C 0.312 3.688 7 O -0.420 6.420 8 C 0.174 3.826 9 O -0.507 6.507 10 N -0.141 5.141 11 C -0.474 4.474 12 H 0.118 0.882 13 C -0.208 4.208 14 N -0.531 5.531 15 Si 0.829 3.171 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.081 4.081 20 N -0.224 5.224 21 C -0.199 4.199 22 C -0.169 4.169 23 N -0.164 5.164 24 H 0.267 0.733 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.248 0.752 31 H 0.236 0.764 32 H 0.099 0.901 33 H 0.212 0.788 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 12.872 -6.400 4.818 15.161 hybrid contribution -0.185 1.110 -1.475 1.855 sum 12.687 -5.290 3.343 14.146 Atomic orbital electron populations 1.21776 0.95065 1.01571 1.01639 1.21816 0.96091 0.93452 1.03827 1.19225 0.84910 0.95631 0.87056 0.88151 1.45482 1.16186 1.56851 1.16682 1.19927 0.82404 0.78524 0.87914 1.90727 1.51450 1.59110 1.40667 1.19504 0.84762 0.88931 0.89381 1.90546 1.52379 1.66236 1.41553 1.41646 1.12976 1.44182 1.15286 1.20012 1.00832 1.33475 0.93036 0.88217 1.26511 0.94622 0.96795 1.02831 1.69549 1.08738 1.41838 1.32973 0.84663 0.78550 0.77802 0.76061 1.18704 1.19181 1.19162 1.22889 0.93430 1.00437 0.91303 1.70087 1.05474 1.22887 1.23969 1.22898 0.93383 1.04223 0.99382 1.23481 0.88713 1.05268 0.99427 1.43367 1.07147 1.41782 1.24118 0.73258 0.91340 0.94933 0.92717 0.88729 0.91222 0.75250 0.76383 0.90084 0.78800 0.76556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.51 71.98 0.61 -3.60 16 2 C -0.11 -2.94 5.58 30.60 0.17 -2.77 16 3 C 0.24 6.69 2.80 44.25 0.12 6.81 16 4 H 0.10 3.13 7.58 -2.39 -0.02 3.11 16 5 N -0.70 -21.90 4.92 -448.01 -2.20 -24.10 16 6 C 0.53 21.43 6.44 87.08 0.56 21.99 16 7 O -0.54 -23.47 13.60 -3.52 -0.05 -23.52 16 8 C 0.39 18.87 7.82 87.08 0.68 19.56 16 9 O -0.62 -31.58 16.03 -3.73 -0.06 -31.64 16 10 N -0.51 -26.69 5.25 -308.88 -1.62 -28.31 16 11 C -0.34 -18.70 9.67 84.35 0.82 -17.88 16 12 H 0.10 5.58 7.15 -2.91 -0.02 5.56 16 13 C 0.00 -0.15 5.51 85.14 0.47 0.32 16 14 N -0.89 -46.81 13.03 21.76 0.28 -46.53 16 15 Si 1.01 39.65 29.56 68.60 2.03 41.67 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 19 C 0.18 4.71 7.19 138.13 0.99 5.70 16 20 N -0.50 -13.38 11.16 -188.13 -2.10 -15.48 16 21 C -0.05 -1.03 11.87 83.53 0.99 -0.04 16 22 C -0.03 -0.57 12.04 83.09 1.00 0.43 16 23 N -0.56 -11.35 5.88 -186.28 -1.09 -12.44 16 24 H 0.43 7.51 7.71 -92.70 -0.71 6.80 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.03 1.13 5.64 -2.39 -0.01 1.12 16 27 H 0.05 1.69 7.85 -2.38 -0.02 1.67 16 28 H 0.09 2.30 8.07 -2.39 -0.02 2.28 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.41 11.75 6.75 -92.71 -0.63 11.13 16 31 H 0.40 21.40 7.35 -92.71 -0.68 20.72 16 32 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 33 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.22 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -65.56 296.95 0.76 -64.80 By element: Atomic # 1 Polarization: 45.87 SS G_CDS: -0.85 Total: 45.03 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 6.42 Total: 30.52 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -6.73 Total: -126.87 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -0.11 Total: -55.15 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Total: -65.56 0.76 -64.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139659351.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.794 kcal (2) G-P(sol) polarization free energy of solvation -65.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds